mRNA_Ecto-sp13_S_contig13632.2872.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13632.2872.1
Unique NamemRNA_Ecto-sp13_S_contig13632.2872.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5KC05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC05_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 4.460e-80
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKP 378
            VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKP
Sbjct:  135 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKP 260          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.360e-73
Identity = 135/160 (84.38%), Postives = 136/160 (85.00%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDISTTCSTKKRNLSSGF 480
            VLSKFGIESEEPYKIHVCDECYR LARN            VGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDI       +  L  GF
Sbjct:  131 VLSKFGIESEEPYKIHVCDECYRWLARNR-----------VGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDNEEKLVVGF 279          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5K101_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K101_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.290e-60
Identity = 116/160 (72.50%), Postives = 117/160 (73.12%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDISTTCSTKKRNLSSGF 480
            VLSKFGIESEEPYKIH                                 KATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDI      K+  L  GF
Sbjct:  171 VLSKFGIESEEPYKIH---------------------------------KATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGF 297          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5KP43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP43_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 4.650e-43
Identity = 87/127 (68.50%), Postives = 98/127 (77.17%), Query Frame = 1
Query:  193 KGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDISTTCSTKKRNLSSGF-LWRNLFLSVKRISIRIARMALSQRCCWIQF 570
            + H+ A  +RRVNNIPGTAKRSMRGTSVFYA NSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDI      K+  L  GF L ++L +S +++       A+  RCCWI F
Sbjct:  120 RDHMFAGSTRRVNNIPGTAKRSMRGTSVFYAKNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGFPLAKSLPISEEKLDSYSENGAIP-RCCWIHF 245          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.600e-32
Identity = 67/147 (45.58%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDIST 441
            VL + G E++ P+++ VC EC+R L+RN +P+AALANG W+G  P+ L+ A+FVE  AA P+R  G V+AL+  +V NI G+AK  MR T  FY  ++  V  +LP     +   IT+VL G      + L RLLGAR+SMI D++T
Sbjct:  249 VLERLGFEADPPHRLRVCAECFRDLSRNRMPEAALANGLWLGEFPEHLRSASFVELIAASPVRVSGIVLALDELKVGNIAGSAKSLMRSTFTFYMQDAYGVQLKLPACDADIAGSITIVLVGANATP-AQLRRLLGARRSMIEDLNT 394          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 6.460e-31
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDI 435
            VL + G ES  PY++ VC EC +SL +  +P+AALANG W+G  P+ L+ ATFVE  AA P+R  G V+AL+  +  ++ G+AK  MRGT  FY  ++  V   LP   T +    T  L G K P  + L RLLGAR+ M++D+
Sbjct:  284 VLERLGFESTSPYRMQVCKECLQSLLKKRIPEAALANGLWLGDFPEHLRSATFVEMIAASPVRISGMVLALDELKTGSVSGSAKSQMRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGCK-PNLAQLRRLLGARRQMVQDL 427          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.500e-29
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDI 435
            VL++ G + + P+ + VC EC  SL ++ +P+AALANG W+G  PD L+ ATFVE  AA P+R  G V+AL+  +V N+ G+AK  MRGT  FY  ++  V   LP   T +    T  L G K P    L +L GAR+ M+ D+
Sbjct:   88 VLARQGFQPDAPHHLRVCQECLNSLLKDKMPEAALANGLWLGDFPDHLRGATFVEMMAASPVRISGMVLALDELKVGNVRGSAKSLMRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGAK-PSVGQLRKLFGARRKMVEDL 231          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.570e-29
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDI 435
            VL++ G + + P+ + VC EC  SL ++ +P+AALANG W+G  PD L+ ATFVE  AA P+R  G V+AL+  +V N+ G+AK  MRGT  FY  ++  V   LP   T +    T  L G K P    L +L GAR+ M+ D+
Sbjct:  168 VLARQGFQPDAPHHLRVCQECLNSLLKDKMPEAALANGLWLGDFPDHLRGATFVEMMAASPVRISGMVLALDELKVGNVRGSAKSLMRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGAK-PSVGQLRKLFGARRKMVEDL 311          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.040e-28
Identity = 65/145 (44.83%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    1 VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDI 435
            VL++ G ES   +++ VC EC R L  N  P A LANG WVG  P+ L+ +T+VE AAA P+RT G V ALE  +V  IPG+A R MRGT  F+  N+  V   LP   T +   +T  L G + P  + L +LLGAR+S I+++
Sbjct: 2286 VLAREGFESGPLHRLRVCSECLRDLNSNKTPYATLANGLWVGDFPEHLKDSTWVEMAAASPVRTSGMVFALEQLKVGAIPGSAHRMMRGTFTFFFQNAYGVEKVLPTCDTDIAGSMTCALVGAR-PTEAQLRKLLGARRSRIQEL 2429          
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.650e-25
Identity = 60/74 (81.08%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  259 MRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDISTTCSTKKRNLSSGF 480
            MRGTSVFYANNSSSV TELPL ATGLLDMITVVLAGKK PKTSDLGRLLGARKSMIRDI      K+  L  GF
Sbjct:    1 MRGTSVFYANNSSSVTTELPLVATGLLDMITVVLAGKKNPKTSDLGRLLGARKSMIRDIIDYMLDKEEKLVVGF 74          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13632.2872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC05_9PHAE4.460e-80100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE1.360e-7384.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K101_9PHAE1.290e-6072.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP43_9PHAE4.650e-4368.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIB1_9PHAE1.600e-3245.58ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G3U9_ECTSI6.460e-3144.14ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5K8N9_9PHAE2.500e-2942.76Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE2.570e-2942.76Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KTA2_9PHAE8.040e-2844.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K657_9PHAE2.650e-2581.08Helitron_like_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13632contigEcto-sp13_S_contig13632:3561..4133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score130.2
Seed ortholog evalue1e-27
Seed eggNOG ortholog2880.D7G3U9
Model size573
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size573
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.9562702-CDS-Ecto-sp13_S_contig13632:3560..41331681462727.9562702-CDS-Ecto-sp13_S_contig13632:3560..4133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13632 3561..4133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13632.2872.1prot_Ecto-sp13_S_contig13632.2872.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13632 3561..4133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13632.2872.1

>prot_Ecto-sp13_S_contig13632.2872.1 ID=prot_Ecto-sp13_S_contig13632.2872.1|Name=mRNA_Ecto-sp13_S_contig13632.2872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
VLSKFGIESEEPYKIHVCDECYRSLARNILPDAALANGFWVGTLPDELQK
ATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSS
VATELPLAATGLLDMITVVLAGKKKPKTSDLGRLLGARKSMIRDISTTCS
TKKRNLSSGFLWRNLFLSVKRISIRIARMALSQRCCWIQF*
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mRNA from alignment at Ecto-sp13_S_contig13632:3561..4133-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13632.2872.1 ID=mRNA_Ecto-sp13_S_contig13632.2872.1|Name=mRNA_Ecto-sp13_S_contig13632.2872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13632:3561..4133- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTAAGTAAGTTCGGAATCGAGTCAGAGGAACCGTACAAGATACATGT ATGCGACGAGTGTTACCGGTCGTTGGCGAGGAACATTTTACCTGATGCTG CTTTGGCGAACGGGTTTTGGGTCGGTACCTTACCCGATGAGCTGCAGAAG GCAACGTTCGTCGAGCGAGCCGCTGCGTATCCAATTCGCACAAAGGGTCA CGTTGTAGCATTGGAATCCAGGCGTGTTAACAACATTCCTGGAACGGCAA AGAGGTCAATGCGAGGAACATCTGTGTTTTACGCTAACAACTCGAGCTCC GTCGCGACGGAGTTACCTTTGGCGGCGACTGGTCTGCTGGATATGATCAC GGTGGTGCTAGCGGGGAAAAAGAAACCGAAAACTTCGGATCTTGGTCGTC TCTTGGGCGCTCGTAAATCAATGATCAGGGACATATCGACTACATGCTCG ACAAAGAAGAGAAACTTGTCGTCGGGTTTCCTCTGGCGAAATCTCTTCCT ATCAGTGAAGAGAATCTCGATTCGTATAGCGAGAATGGCGCTATCCCAAA GGTGCTGTTGGATTCAATTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13632:3561..4133-

>mRNA_Ecto-sp13_S_contig13632.2872.1 ID=mRNA_Ecto-sp13_S_contig13632.2872.1|Name=mRNA_Ecto-sp13_S_contig13632.2872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13632:3561..4133- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTAAGTAAGTTCGGAATCGAGTCAGAGGAACCGTACAAGATACATGT
ATGCGACGAGTGTTACCGGTCGTTGGCGAGGAACATTTTACCTGATGCTG
CTTTGGCGAACGGGTTTTGGGTCGGTACCTTACCCGATGAGCTGCAGAAG
GCAACGTTCGTCGAGCGAGCCGCTGCGTATCCAATTCGCACAAAGGGTCA
CGTTGTAGCATTGGAATCCAGGCGTGTTAACAACATTCCTGGAACGGCAA
AGAGGTCAATGCGAGGAACATCTGTGTTTTACGCTAACAACTCGAGCTCC
GTCGCGACGGAGTTACCTTTGGCGGCGACTGGTCTGCTGGATATGATCAC
GGTGGTGCTAGCGGGGAAAAAGAAACCGAAAACTTCGGATCTTGGTCGTC
TCTTGGGCGCTCGTAAATCAATGATCAGGGACATATCGACTACATGCTCG
ACAAAGAAGAGAAACTTGTCGTCGGGTTTCCTCTGGCGAAATCTCTTCCT
ATCAGTGAAGAGAATCTCGATTCGTATAGCGAGAATGGCGCTATCCCAAA
GGTGCTGTTGGATTCAATTCTGA
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