prot_Ecto-sp13_S_contig13625.2864.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13625.2864.1
Unique Nameprot_Ecto-sp13_S_contig13625.2864.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length120
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Match: A0A2J8A4F0_9CHLO (Transmembrane protein 218 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4F0_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 8.280e-7
Identity = 31/106 (29.25%), Postives = 54/106 (50.94%), Query Frame = 0 
Query:    2 GLGVGVFLIFFFSMVAAVVCLVGATTPRPGTFACGGAGLLGFVTFILLVAEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGKPVHATPV 107
            G+G+GVFL+FFF  ++ VVCLVG+ T            + G +  +L+ + +  + V+      + +D T  P +I    + +  LLG   + V H+   V+A P+
Sbjct:   46 GVGLGVFLVFFFLALSLVVCLVGSRTKYRWAIYMASTAMFGIIALVLIASPKGEKPVKPP----EGYDLTIIPVVIITAVVCIGVLLGAVGMLVFHVLPTVYARPL 147
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BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Match: D8TRS0_VOLCA (Transmembrane protein 218 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRS0_VOLCA)

HSP 1 Score: 52.0 bits (123), Expect = 4.370e-6
Identity = 28/114 (24.56%), Postives = 59/114 (51.75%), Query Frame = 0 
Query:    2 GLGVGVFLIFFFSMVAAVVCLVGATTPRPGTFACGGAGLLGFVTFILLVAEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGKPVHATPVYDQRSDLR 115
            G+GVGVFL+FFF  ++ ++CL+G+ +          A + G V  +LL + +  +    ++   + +DQT  P ++ ++ +A+  L+    + +  +   V+A P+      L+
Sbjct:    7 GVGVGVFLLFFFLALSVLICLLGSRSKLRWIVFTASAAMFGIVALVLLASPKGPK----RTKPPEGYDQTIVPLVVVMVILAIGVLMSAVGMLIFALLPTVYARPLSHHLDVLK 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2J8A4F0_9CHLO8.280e-729.25Transmembrane protein 218 n=1 Tax=Tetrabaena socia... [more]
D8TRS0_VOLCA4.370e-624.56Transmembrane protein 218 n=1 Tax=Volvox carteri f... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..98
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..71
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 99..119
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..18
score: 0.714
NoneNo IPR availableTMHMMTMhelixcoord: 77..99
NoneNo IPR availableTMHMMTMhelixcoord: 32..51
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13625contigEcto-sp13_S_contig13625:22..2510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13625.2864.1mRNA_Ecto-sp13_S_contig13625.2864.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13625 1..2761 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13625.2864.1 ID=prot_Ecto-sp13_S_contig13625.2864.1|Name=mRNA_Ecto-sp13_S_contig13625.2864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MGLGVGVFLIFFFSMVAAVVCLVGATTPRPGTFACGGAGLLGFVTFILLV
AEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGK
PVHATPVYDQRSDLRRPIF*
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