mRNA_Ecto-sp13_S_contig13603.2851.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13603.2851.1
Unique NamemRNA_Ecto-sp13_S_contig13603.2851.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13603.2851.1 vs. uniprot
Match: A0A6H5JIE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE4_9PHAE)

HSP 1 Score: 701 bits (1810), Expect = 7.750e-244
Identity = 451/571 (78.98%), Postives = 472/571 (82.66%), Query Frame = 1 
Query:    1 MTGKRKEERRRPVACFRCRRMLMLTSLFSLVXXXXXXSEPALASSADSGNSNSNSNDVRQPEEMPPADAVDNDPRVDAAGDAASVPGRDSMEDTPRINARSGHVEDAEELGMPTAFATPWVDEGEGEDEGGGSVPLTPADPIASGAVSLAGASVSSSGTTGSQLATQPGAASQVDAVDITQQHDAAAAVAAHSATGPVDVDVDTPSSAATSAADAIQGSELDHNSHQHDTNVLAVGDEGGDSGGGRLGVSTGFDAGREEELPAAEAASAPGVDTAEDRTRNEGEVKDEALRLEGDGGKGAXXXXXXXXXXXXMDELVEETKEAVKGGESLMIDGDYREVARSSDEMGSGATGLDVPAAVVDDSEVADSATADVGGDADAEPTAAAAAALAAEESVE------QRLPPVQPLVSEKEPSLDARSSDTDAVQAKDIGEESLSPAVGDDDAGTDDGDGAANTGVSDFAELPAPDNGTSTASAGRESQSVWTPSGTSSPPESAAAVMGELDEELLKAEGSGGSYSXXXXXXXXXXXXXXXXXXXXGRKADEHCPEEDSEVETETADYSSSRTSGG 1695
            MTGKRK++RRR VACFR RR+LMLTSLFSLV    XX EPA ASSADSGNS SNSND RQPEE PPAD VDNDP V+AA D ASVPGRDS+EDT RINARSGHVEDAEELGMPTA AT  VDEGEGED+GGGSV LTPADP+ASGAVSLAGAS S   TTG Q ATQ GAASQ DAV I QQHDAAAAVAAHSATGPVDVD DTPS AATSAADA+QGSELD NSHQHDTNVLAVGDEG  SGGGRLG  TGFDAGRE++LPAAEAASAPGV+TAEDRTRNEGE+KDEALRLEGDGGK A             DELVEET EAVKGGESLM DGDY E A SSDE+ SGATGLD PAAVVDDSEVADSATADVGGDADAEPTAAA                 QR+PPVQPLVSEKEPSLDA SSDT A QAKDIG E+LSPAVGDDD  TD+GDGAA TGVSDFA+LPAPD GTSTASAG E QSV TPSGTSSPP+S AAV   LDEE+LK+EGSGGSY XXXXXXXXXXXXXXXXXXXX     EH P EDSEVETET D+SSSRTSGG
Sbjct:    1 MTGKRKDKRRRTVACFRYRRILMLTSLFSLVVLRCXXXEPAQASSADSGNSRSNSNDARQPEETPPADVVDNDPCVNAADDVASVPGRDSIEDTLRINARSGHVEDAEELGMPTAIATLGVDEGEGEDDGGGSVSLTPADPVASGAVSLAGASASXXXTTGDQQATQAGAASQGDAVVIMQQHDAAAAVAAHSATGPVDVDADTPSFAATSAADAMQGSELDQNSHQHDTNVLAVGDEGCVSGGGRLGGPTGFDAGREKKLPAAEAASAPGVETAEDRTRNEGEIKDEALRLEGDGGKEAGGARDEIDRPGGKDELVEETTEAVKGGESLMTDGDYSEAAHSSDEVESGATGLDDPAAVVDDSEVADSATADVGGDADAEPTAAAXXXXXXXXXXXXXXXXXQRVPPVQPLVSEKEPSLDAHSSDTGAAQAKDIGGEALSPAVGDDDTDTDEGDGAACTGVSDFAKLPAPDTGTSTASAGGEFQSVRTPSGTSSPPKSVAAVADGLDEEVLKSEGSGGSYXXXXXXXXXXXXXXXXXXXXXXXX--EHRPVEDSEVETETGDHSSSRTSGG 569
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BLAST of mRNA_Ecto-sp13_S_contig13603.2851.1 vs. uniprot
Match: D7FHY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY4_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 2.870e-163
Identity = 352/572 (61.54%), Postives = 362/572 (63.29%), Query Frame = 1 
Query:    1 MTGKRKEERRRPVACFRCRRMLMLTSLFSLVXXXXXXSEPALASSADSGNSNSNSNDVRQPEEMPPADAVDNDPRVDAAGDAASVPGRDSMEDTPRINARSGHVEDAEELGMPTAFATPWVDEGEGEDEGGGSVPLTPADPIASGAVSLAGASVSSSGTTGSQLATQPGAASQVDAVDITQQHDAAAAVAAHSATGPVDVDVDTPSSAATSAADAIQGSELDHNSHQHDTNVLAVGDEGGDSGGGRLGVSTGFDAGREEELPAAEAASAPGVDTAEDRTRNEGEVKDEALRLEGDGGKGAXXXXXXXXXXXXMDELVEETKEAVKGGESLMIDGDYREVARSSDEMGSGATGLDVPAAVVDDSEVADSATADVGGDADAEPTAAAAAALAAEESVEQRLPPVQPLVSEKEPSLDARSSDTDAVQAKDIGEESLSPAVGDDDAGTDDGDGAANTGVSDFAELPAPDNGTSTASAGRESQSVWTPSGTSSPPESAAAVMGELDEELLKAEGSGGSYSXXXXXXXXXXXXXXXXXXXXGRKADEHCPEEDSEVETETADYSSSRTSGGSGGRRDA 1716
            MTGK+KE+RRRPVAC R RRMLM TSLF   XXXXXX EPA ASSADSGNSNSNSND RQPEEMPPAD VDNDP VDAAGDAASVPGRDS+ED  RINARSGHVEDAEELGMP+  ATP VDEGEGED+GGGSV LTPADP ASGAVSLAGAS SSSGTTGSQ ATQ GAASQ DAVDI QQHD AAAVAAHSATGPVD+D DTPSS AT AADAIQGSELD NSHQHDTNVLAVGDEGGDSGGGRLGVSTGFDAGRE+ELPAAEA SAPGVDTAEDR RNEGE++DEALRLEGDGGK A            MDELVEETKEA                                                                                                                                                           SV TPSGTSSPPESAAAV  ELDEELLKAEGSGGSYSXXXXXXXXXXXXXXXXXXXX      H PEEDSEVETET D+SSSRTSGGSG RRDA
Sbjct:    1 MTGKKKEKRRRPVACLRYRRMLMRTSLFXXXXXXXXXXEPAQASSADSGNSNSNSNDARQPEEMPPADVVDNDPGVDAAGDAASVPGRDSIEDKSRINARSGHVEDAEELGMPSTVATPGVDEGEGEDDGGGSVSLTPADPAASGAVSLAGASASSSGTTGSQRATQAGAASQEDAVDIMQQHDVAAAVAAHSATGPVDLDADTPSSTATPAADAIQGSELDQNSHQHDTNVLAVGDEGGDSGGGRLGVSTGFDAGREKELPAAEATSAPGVDTAEDRARNEGEIQDEALRLEGDGGKEAGGARDETDRPCGMDELVEETKEA-----------------------------------------------------------------------------------------------------------------------------------------------------------SVRTPSGTSSPPESAAAVADELDEELLKAEGSGGSYSXXXXXXXXXXXXXXXXXXXXX-----HRPEEDSEVETETGDHSSSRTSGGSGXRRDA 412
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13603.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIE4_9PHAE7.750e-24478.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY4_ECTSI2.870e-16361.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13603contigEcto-sp13_S_contig13603:1..1728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score503.4
Seed ortholog evalue1.4e-139
Seed eggNOG ortholog2880.D7FHY4
Model size1728
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2E73F@1,2SDR3@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006360.1
Cds size1728
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.5925515-CDS-Ecto-sp13_S_contig13603:0..17281681462726.5925515-CDS-Ecto-sp13_S_contig13603:0..1728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13603 1..1728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13603.2851.1prot_Ecto-sp13_S_contig13603.2851.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13603 1..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13603.2851.1

>prot_Ecto-sp13_S_contig13603.2851.1 ID=prot_Ecto-sp13_S_contig13603.2851.1|Name=mRNA_Ecto-sp13_S_contig13603.2851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=576bp
MTGKRKEERRRPVACFRCRRMLMLTSLFSLVVLLCCCSEPALASSADSGN
SNSNSNDVRQPEEMPPADAVDNDPRVDAAGDAASVPGRDSMEDTPRINAR
SGHVEDAEELGMPTAFATPWVDEGEGEDEGGGSVPLTPADPIASGAVSLA
GASVSSSGTTGSQLATQPGAASQVDAVDITQQHDAAAAVAAHSATGPVDV
DVDTPSSAATSAADAIQGSELDHNSHQHDTNVLAVGDEGGDSGGGRLGVS
TGFDAGREEELPAAEAASAPGVDTAEDRTRNEGEVKDEALRLEGDGGKGA
GGATDETDRPDGMDELVEETKEAVKGGESLMIDGDYREVARSSDEMGSGA
TGLDVPAAVVDDSEVADSATADVGGDADAEPTAAAAAALAAEESVEQRLP
PVQPLVSEKEPSLDARSSDTDAVQAKDIGEESLSPAVGDDDAGTDDGDGA
ANTGVSDFAELPAPDNGTSTASAGRESQSVWTPSGTSSPPESAAAVMGEL
DEELLKAEGSGGSYSGGSYSGGGGGGGADDHGVADGRKADEHCPEEDSEV
ETETADYSSSRTSGGSGGRRDAKEYE
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mRNA from alignment at Ecto-sp13_S_contig13603:1..1728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13603.2851.1 ID=mRNA_Ecto-sp13_S_contig13603.2851.1|Name=mRNA_Ecto-sp13_S_contig13603.2851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13603:1..1728- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGGGAAGAGAAAAGAAGAGAGAAGACGACCGGTAGCATGTTTCCG
TTGTCGGAGGATGCTTATGCTCACAAGTTTGTTCTCGTTGGTGGTTTTGC
TGTGCTGCTGCAGCGAGCCTGCTCTGGCTTCTTCTGCTGACAGCGGCAAC
AGCAACAGCAACAGCAACGACGTGAGGCAACCCGAAGAAATGCCGCCTGC
CGATGCCGTTGACAACGACCCTCGTGTTGATGCCGCCGGTGATGCCGCCA
GTGTGCCCGGTAGGGATTCCATGGAAGACACACCGAGAATAAACGCGAGG
AGCGGCCACGTGGAAGACGCGGAGGAGTTGGGAATGCCCACAGCTTTTGC
GACACCCTGGGTAGACGAGGGAGAGGGGGAGGACGAAGGCGGTGGCTCCG
TTCCGTTGACTCCTGCTGACCCAATAGCATCAGGAGCGGTATCGCTAGCG
GGAGCATCCGTATCATCTTCAGGGACGACAGGTAGTCAACTGGCAACACA
ACCGGGAGCGGCTTCCCAAGTAGACGCTGTAGATATCACACAGCAACACG
ACGCCGCGGCCGCCGTGGCAGCGCACTCTGCCACTGGTCCTGTTGACGTT
GATGTCGACACTCCTTCTTCCGCCGCTACCAGTGCTGCTGATGCAATTCA
AGGGTCTGAACTAGATCATAACAGCCATCAGCACGATACGAACGTTCTGG
CCGTTGGCGACGAAGGTGGCGACAGCGGGGGCGGACGGTTGGGTGTGTCG
ACGGGGTTCGACGCCGGGAGAGAAGAAGAACTGCCAGCGGCGGAGGCGGC
TTCGGCACCGGGAGTAGACACGGCAGAGGATCGGACGAGGAACGAGGGCG
AAGTAAAGGATGAGGCGCTGCGATTGGAAGGTGACGGCGGCAAGGGAGCT
GGGGGCGCGACGGATGAAACCGACCGGCCTGACGGTATGGATGAGCTTGT
GGAAGAGACAAAGGAAGCGGTCAAGGGAGGAGAGTCGCTAATGATAGACG
GCGACTATCGGGAAGTAGCACGCAGTAGCGATGAAATGGGATCAGGGGCG
ACCGGACTCGATGTCCCAGCTGCTGTCGTTGATGATTCTGAAGTTGCCGA
CTCTGCCACCGCTGATGTTGGCGGCGATGCTGACGCCGAGCCTACCGCTG
CTGCTGCTGCTGCCCTGGCTGCTGAGGAGAGCGTAGAGCAGCGACTACCA
CCGGTGCAGCCCCTGGTCTCCGAGAAAGAACCATCGCTCGACGCACGCAG
CAGCGATACCGACGCAGTTCAAGCGAAGGACATCGGCGAAGAATCCCTAT
CACCAGCAGTCGGGGACGATGATGCAGGTACAGATGACGGTGACGGCGCT
GCTAACACTGGCGTTTCTGATTTCGCGGAGCTACCCGCCCCCGACAACGG
TACCTCTACCGCCTCCGCCGGTAGAGAATCCCAGTCTGTGTGGACACCCA
GCGGAACATCATCACCACCAGAGTCGGCGGCAGCTGTCATGGGTGAGCTC
GATGAGGAGCTGTTGAAAGCAGAAGGATCGGGCGGCAGCTACAGCGGCGG
CAGCTACAGCGGCGGCGGCGGCGGCGGCGGGGCTGACGATCACGGGGTCG
CCGACGGTAGGAAGGCGGATGAACACTGCCCTGAGGAGGACTCTGAGGTC
GAGACAGAGACCGCTGATTACAGTAGCAGCAGAACAAGCGGGGGCAGCGG
AGGGCGGAGGGACGCGAAAGAGTACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13603:1..1728-

>mRNA_Ecto-sp13_S_contig13603.2851.1 ID=mRNA_Ecto-sp13_S_contig13603.2851.1|Name=mRNA_Ecto-sp13_S_contig13603.2851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13603:1..1728- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGGGAAGAGAAAAGAAGAGAGAAGACGACCGGTAGCATGTTTCCG
TTGTCGGAGGATGCTTATGCTCACAAGTTTGTTCTCGTTGGTGGTTTTGC
TGTGCTGCTGCAGCGAGCCTGCTCTGGCTTCTTCTGCTGACAGCGGCAAC
AGCAACAGCAACAGCAACGACGTGAGGCAACCCGAAGAAATGCCGCCTGC
CGATGCCGTTGACAACGACCCTCGTGTTGATGCCGCCGGTGATGCCGCCA
GTGTGCCCGGTAGGGATTCCATGGAAGACACACCGAGAATAAACGCGAGG
AGCGGCCACGTGGAAGACGCGGAGGAGTTGGGAATGCCCACAGCTTTTGC
GACACCCTGGGTAGACGAGGGAGAGGGGGAGGACGAAGGCGGTGGCTCCG
TTCCGTTGACTCCTGCTGACCCAATAGCATCAGGAGCGGTATCGCTAGCG
GGAGCATCCGTATCATCTTCAGGGACGACAGGTAGTCAACTGGCAACACA
ACCGGGAGCGGCTTCCCAAGTAGACGCTGTAGATATCACACAGCAACACG
ACGCCGCGGCCGCCGTGGCAGCGCACTCTGCCACTGGTCCTGTTGACGTT
GATGTCGACACTCCTTCTTCCGCCGCTACCAGTGCTGCTGATGCAATTCA
AGGGTCTGAACTAGATCATAACAGCCATCAGCACGATACGAACGTTCTGG
CCGTTGGCGACGAAGGTGGCGACAGCGGGGGCGGACGGTTGGGTGTGTCG
ACGGGGTTCGACGCCGGGAGAGAAGAAGAACTGCCAGCGGCGGAGGCGGC
TTCGGCACCGGGAGTAGACACGGCAGAGGATCGGACGAGGAACGAGGGCG
AAGTAAAGGATGAGGCGCTGCGATTGGAAGGTGACGGCGGCAAGGGAGCT
GGGGGCGCGACGGATGAAACCGACCGGCCTGACGGTATGGATGAGCTTGT
GGAAGAGACAAAGGAAGCGGTCAAGGGAGGAGAGTCGCTAATGATAGACG
GCGACTATCGGGAAGTAGCACGCAGTAGCGATGAAATGGGATCAGGGGCG
ACCGGACTCGATGTCCCAGCTGCTGTCGTTGATGATTCTGAAGTTGCCGA
CTCTGCCACCGCTGATGTTGGCGGCGATGCTGACGCCGAGCCTACCGCTG
CTGCTGCTGCTGCCCTGGCTGCTGAGGAGAGCGTAGAGCAGCGACTACCA
CCGGTGCAGCCCCTGGTCTCCGAGAAAGAACCATCGCTCGACGCACGCAG
CAGCGATACCGACGCAGTTCAAGCGAAGGACATCGGCGAAGAATCCCTAT
CACCAGCAGTCGGGGACGATGATGCAGGTACAGATGACGGTGACGGCGCT
GCTAACACTGGCGTTTCTGATTTCGCGGAGCTACCCGCCCCCGACAACGG
TACCTCTACCGCCTCCGCCGGTAGAGAATCCCAGTCTGTGTGGACACCCA
GCGGAACATCATCACCACCAGAGTCGGCGGCAGCTGTCATGGGTGAGCTC
GATGAGGAGCTGTTGAAAGCAGAAGGATCGGGCGGCAGCTACAGCGGCGG
CAGCTACAGCGGCGGCGGCGGCGGCGGCGGGGCTGACGATCACGGGGTCG
CCGACGGTAGGAAGGCGGATGAACACTGCCCTGAGGAGGACTCTGAGGTC
GAGACAGAGACCGCTGATTACAGTAGCAGCAGAACAAGCGGGGGCAGCGG
AGGGCGGAGGGACGCGAAAGAGTACGAG
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