mRNA_Ecto-sp13_S_contig13602.2850.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13602.2850.1
Unique NamemRNA_Ecto-sp13_S_contig13602.2850.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13602.2850.1 vs. uniprot
Match: D7FTA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA3_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 5.540e-102
Identity = 166/203 (81.77%), Postives = 173/203 (85.22%), Query Frame = 1 
Query:    1 DPQPRNSDTYYNDTVTKLRSVGYANAILFVVSQQERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKADQEAHESESRRTVNEILDATNLKNFSKMQFFMLTNGSGEEQDKQVKNMREQVKRSPRVEVNATEGLRLTTEVKSDDLDGKGSDDGXXXXXXXXXXXXXXXXXXXXXXSKRNTAAALVPLSVFHRFNSR 609
            +P+PRNSDTYYNDTVTKLRSVGYANAILFVV+Q ERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNK+DQEAHESESRRTVN+ILDATNLKNFSKMQFFMLTNGSGEEQDKQVK MREQVKRSPRVEVNATEGLRLTTEVKSDDLDGKGSDDG                       KRN AAA+VP SVFH  + R
Sbjct:   21 EPKPRNSDTYYNDTVTKLRSVGYANAILFVVTQ-ERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKSDQEAHESESRRTVNQILDATNLKNFSKMQFFMLTNGSGEEQDKQVKYMREQVKRSPRVEVNATEGLRLTTEVKSDDLDGKGSDDGTIRQHYPHSLYQQRTGKRVLAGRKRNPAAAVVPRSVFHAGSVR 222
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BLAST of mRNA_Ecto-sp13_S_contig13602.2850.1 vs. uniprot
Match: A0A6H5KNJ1_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ1_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 1.180e-92
Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 1 
Query:    1 DPQPRNSDTYYNDTVTKLRSVGYANAILFVVSQQERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKADQEAHESESRRTVNEILDATNLKNFSKMQFFMLTNGSGEEQDKQVKNMREQVKRSPRVEVNATEGLRLTTEVKSDDLDGKGSDDG 480
            DP PRNSDTYYNDTVTKLRSVGYANAILFVV+Q ERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKADQEAHESESR TVN+ILDATNLKNFSKMQFFMLTNGSGEEQDKQVKNMREQVK SPRVEV+ATEGLRLTTEVKSDDLDGKGSDDG
Sbjct:  237 DPLPRNSDTYYNDTVTKLRSVGYANAILFVVTQ-ERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKADQEAHESESRSTVNQILDATNLKNFSKMQFFMLTNGSGEEQDKQVKNMREQVKSSPRVEVSATEGLRLTTEVKSDDLDGKGSDDG 395
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13602.2850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTA3_ECTSI5.540e-10281.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNJ1_9PHAE1.180e-9295.63G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13602contigEcto-sp13_S_contig13602:512..4617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size678
Hectar predicted targeting categoryother localisation
Exons5
Cds size678
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.481707-CDS-Ecto-sp13_S_contig13602:511..6411681462726.481707-CDS-Ecto-sp13_S_contig13602:511..641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13602 512..641 -
1681462726.5013409-CDS-Ecto-sp13_S_contig13602:1157..13271681462726.5013409-CDS-Ecto-sp13_S_contig13602:1157..1327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13602 1158..1327 -
1681462726.5272753-CDS-Ecto-sp13_S_contig13602:3086..32331681462726.5272753-CDS-Ecto-sp13_S_contig13602:3086..3233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13602 3087..3233 -
1681462726.5399473-CDS-Ecto-sp13_S_contig13602:3743..38751681462726.5399473-CDS-Ecto-sp13_S_contig13602:3743..3875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13602 3744..3875 -
1681462726.5522785-CDS-Ecto-sp13_S_contig13602:4518..46171681462726.5522785-CDS-Ecto-sp13_S_contig13602:4518..4617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13602 4519..4617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13602.2850.1prot_Ecto-sp13_S_contig13602.2850.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13602 512..4617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13602.2850.1

>prot_Ecto-sp13_S_contig13602.2850.1 ID=prot_Ecto-sp13_S_contig13602.2850.1|Name=mRNA_Ecto-sp13_S_contig13602.2850.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp
DPQPRNSDTYYNDTVTKLRSVGYANAILFVVSQQERVTPTLIKNYGLLYR
ALNRLDCVKMFVLRRETSYLLLNKADQEAHESESRRTVNEILDATNLKNF
SKMQFFMLTNGSGEEQDKQVKNMREQVKRSPRVEVNATEGLRLTTEVKSD
DLDGKGSDDGSSSNSSSNGSRRSSKRMSRKKGSKRNTAAALVPLSVFHRF
NSRESVAEPLDDARDRAPLTACLSW*
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mRNA from alignment at Ecto-sp13_S_contig13602:512..4617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13602.2850.1 ID=mRNA_Ecto-sp13_S_contig13602.2850.1|Name=mRNA_Ecto-sp13_S_contig13602.2850.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4106bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13602:512..4617- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCCCAGCCCCGAAACTCGGACACGTACTACAACGACACGGTGACCAA
GCTCCGCTCGGTGGGCTACGCCAACGCCATCCTGTTCGTGGTCAGCCAGG
TAAACCCCTAACCCTAAGGTAACTTCAACAGATTGAGCCTTCCAACCAAC
CAACTATATGCTCCACCCCAACCCGAAACGTACGAGTTCGTGGTCTGTGA
TTTCCGCGGAAACTGGCTCTCGTCTCTTCTCTCTTTCTCGAGAAAAGTCT
CGGCGCCTCCAAACACCCCCCACCCCCCACCCACGTCCGCACCGAAAACC
TGATTCCGCGGGGCTGCGTTGGTCGATACCCATGTGTCCCTCATGTGTGC
GTTCATTTCTTGCGCTGCGCCGTCTACTTGCTCTTTTCTACCCCTTTCGC
TTGTGTCTTTCGTACAACCCTCTACATACTGTCAACGCCCTATTGCCGGA
TGTATGGACCGCCACCTCCCTCGTTGGTCGTGTCCTTTGTACCCTGCCTG
TTGACGCCATATGGCTGGCTGGCTGGCTGGCTGCTGTACCTCTTTTTGGC
CGACCACCTTTGGCCCCTCTTTGCTAGCGTCTTTTTGTACCTTGTGCTGG
CTGTTGACGCCATATGGCTGCCTTCCTGTCCGCCTGCCTGCCGTACCTCT
TCATGGCCACGCCGGTGTCTGTACCTTATTCTGACTGTTGACGCCATTTG
TTGCCTCCCTGCCTCCCCGCTGTACCTCTTCTACTGTGAGAGCAGGAGAG
GGTAACCCCGACGCTGATCAAGAACTACGGGCTCCTGTACAGAGCTCTGA
ACCGGCTCGACTGCGTGAAGATGTTCGTGCTGCGGAGAGAGACGAGCTAC
TTGCTGCTTAACAAGGCAGATCAGGTTCGTTCATGTTCTCTTTGCTTTAG
AGTCGGAGATTTTGGCTATTCCCTCAGTGTACTCGACACAAGATAATTCA
CCTCGTGGGCCGGTTTTCACAGCTCGATTACTCCACGGACGAAGAGGATG
CTTCTACGAAACGAATAGGTTGTCGGAGAGCTCTCGACCAGACGGCTTGA
ACACCGCCGTTTTCAGCGCTGCGACTCTTTCGGCTGTTGATCAAGCGAGC
TTCGAAAATCGGTCCAGGGTGTGTGTTATCTCGTAGTCAACTGAACGCCT
CCAACGGCACACTCCGGCACTTTGGGCCACGGTATCACCGGTTTGAAAGT
TTGGCGCGAACTGCTGGAAACCCGTGTGTCGTCGTCGTTTTTGTGGTGTT
TTTTGAACCTCATTCCTCACAACGATCTGATAGTAAGACGCCAACGTTCC
GACGGACAGTTCCTAGGTTCCACAAACTGCGTCCCCTGTTGTTGACGCAT
ATCGTGTTTTTTTTTTAATTCTTGTTCTCTTCAGGAGGCGCACGAGAGCG
AGTCGCGGAGAACCGTGAACGAGATCCTCGACGCAACCAACCTCAAGAAT
TTCAGCAAGATGCAGTTCTTCATGCTCACGAACGGCTCGGGAGAAGAGCA
GGACAAGCAGGTCAAGAACATGAGAGAGCAGGTGAGGGAGAGATTGAGAG
AGGAACCCTGTACGTTTGAGGAATTGAGACGAGCAGGTCAGTCACATGAG
AGAGCAGGTGAGAGGGAGATAGAAGAGAGAAAAGCCCTGTACGTTTGAGG
AATTTTGCTCTTGCTTTTGGTTGGTTGTTCCGTTTGAGATCGCTTCTGGT
GTTTTATTTTGGTCCATATCCGTGCGTTTTGCGGCTGGTTGGGTTGGTGA
TTGCATGCATTGGAGAGACGCATAGGGTAAATGAGAGAGGGGGAGGGAGC
AATACAGATACAGATCAACACACATGCGGAGAGAGACTGAGACAGAGACC
GAGACAGAAAGAGACAGAGACGAAGACACAGATGGCGATGGAGATTACGG
AGGACAGCACGGCGTGCCTACCCTCCTCCGCAAACGCGAACGCGCAAGAG
GAAGAAAATACGCAGATTCGATGCAACATGTCCAGCAACACCTTCTTGCG
ATACCGGTGGATGTTGCGCATTACCTCGTCCGCGCGCATGTTCTTCTTTG
TCCCCATTTTATTGTATTGTCCTACTTTAATTCTTACTTTGTCCTTGTTT
TCTTTCTTTTTGTCCTCCTTTTATTCTTCTGTCCATATTTTATTCTTTCC
TTGTTCGTCTCTCGTTTTTTACTTCTTTCTTTGTTCTTTATCCGAGCGAA
GCGATATTTCTAATCTTGCCTGAGGAGACAGCGCAACATAGGCTCCATCC
AGAGCAAAGAGTTTGTACAGTTTGTTCGCTTAATCAAGGTTCTAGATCTA
GAGCACATGACTTGATTTTAGACTGTAGGGGTCAGCAGATGAAATTTTTT
TTTTCGGAGCACACTGTCAGCGGATTGCAGCAGAGAACATACGCACTGCG
GGCGACACCACACAGCAGACAGCACACGCACAGCGGGCGACAGCATCTGG
GTTCGATGCCGCTGGACTCTCTGTGGTGTGATGAGGCTATGTATTGGTCT
GCCAGCAATGTGAGCACAGCACCACTTTAGTTCTCGAAACCTAGGACGCC
GATCGCCATCGCACCACTTCGAGCGTGTGCTCCATTGAGCTGTCTCTGGG
CCTGATGGTTGTGTTGGGCACGGGTGCTGTATGTGGCGAGAGCATCGTGG
CGATGTGAAATCCGGTTTGGCTTTTTCCCCTGGCGATGCGGCCCGATTGC
CCGGGCCAAAAACGACTTGGATTCCATGCCGCCACGAAGGTCTTCCCACA
CCCAGCACCCATTCCTGACACAACTGTCACGCCCCGAGATATCGCAATGG
AGCACACGCTGGAAGTGGTGCCATCACGATTGGTGCGCTAGGTGACGAGA
ACTGACTTGTGTCCTGCTCTTTGGCTGGCAGTTGGAGAAACACCGAACAA
AGAAAAGGGAACAGGGCGTTCAGCAATAGTATGCGAGGGGTTTGTATGAT
CACGAAAGCGGGATGTGGACTGGGGGGGGGGGTAACCGGTAGGTGAAGCT
CGGAGTCTAACGGCTTTTGTTACCACAGCTCTCACACCATCACAGCAGGT
AGTTGATAAGTGTGTAGTGTTTGCCCTCTGTTTCCGCCCGTGGACGCACA
CGTCTAACGACAGTTACGTCTATCAGCTGTTGCTCATTGTACGACAGCTA
TTCTTTCTTTTTGTCCCTTGTTTTCTTCCTCTTGTCCTCGTTCTGTTCTC
CTGAGAATATTTTATTCTTTTAGTGTATTCTTGTCCGTCTTTTCGTTCAT
TTTTTGTCGGTTCTTCATTTTTTCTGTGTCATGTAAACAGGTGAAAAGAT
CGCCAAGGGTCGAGGTAAACGCGACGGAGGGACTGCGGCTCACGACGGAG
GTGAAGTCGGACGACCTCGACGGCAAGGGCTCGGACGACGGGAGCAGCAG
CAACTCGAGCAGCAACGGCAGCAGGAGGAGCAGCAAGCGGATGAGCAGGA
AGAAGGGCTCGTTCGATTCGTCTGCGCTCGAAAAGGCGGCGGCCGCCGGG
TCCACCGACGGCGGCGGCCAGCTTTCTCCCGACAAGGCTGGCAAGGCCGG
GTGCTCCGTGATGTAGACGGGGGGGGGGGGGCGTATGCTGATCATTCTTC
AGCATGCCCGCCGGCAACCGCCTGCCTACCCGCCGTTGACGCCCTCGCAA
TGCCCAAGGAGCCCTGGTCGCGCCGGGTGCGATGAACCGATGTGTTCGTT
TGGTGGGGGTAATATTTCTTTATCCTTCTTTTCTTTGTTGATAGATTTGG
GATGAGCGATTGAGCCACCAAGTTTGGATCTCTACCAGTACAGAAGCAGC
ATGTTGCAACTCAACGACTTCTATATCGTGTAGAATGAGTGCAAGCCCCG
CCACGCAGCAGCTTAGGCAGCAGAGGCAGAGGCAGCAGCAGCAGCGGCAG
CGGCACCAGCAACAGCAACGGTAGCACTACCGCCACTCTCTGNNNNNNNN
NNCGGAAAACGAGTCTTGGCCGCAAGGAAAAGAAACACCGCCGCAGCACT
GGTGCCGCTCAGCGTTTTTCACCGGTTTAATTCGCGTGAATCGGTCGCAG
AACCACTCGATGATGCACGTGACAGAGCCCCCCTGACGGCATGCCTGTCA
TGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13602:512..4617-

>mRNA_Ecto-sp13_S_contig13602.2850.1 ID=mRNA_Ecto-sp13_S_contig13602.2850.1|Name=mRNA_Ecto-sp13_S_contig13602.2850.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13602:512..4617- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCCCAGCCCCGAAACTCGGACACGTACTACAACGACACGGTGACCAA
GCTCCGCTCGGTGGGCTACGCCAACGCCATCCTGTTCGTGGTCAGCCAGC
AGGAGAGGGTAACCCCGACGCTGATCAAGAACTACGGGCTCCTGTACAGA
GCTCTGAACCGGCTCGACTGCGTGAAGATGTTCGTGCTGCGGAGAGAGAC
GAGCTACTTGCTGCTTAACAAGGCAGATCAGGAGGCGCACGAGAGCGAGT
CGCGGAGAACCGTGAACGAGATCCTCGACGCAACCAACCTCAAGAATTTC
AGCAAGATGCAGTTCTTCATGCTCACGAACGGCTCGGGAGAAGAGCAGGA
CAAGCAGGTCAAGAACATGAGAGAGCAGGTGAAAAGATCGCCAAGGGTCG
AGGTAAACGCGACGGAGGGACTGCGGCTCACGACGGAGGTGAAGTCGGAC
GACCTCGACGGCAAGGGCTCGGACGACGGGAGCAGCAGCAACTCGAGCAG
CAACGGCAGCAGGAGGAGCAGCAAGCGGATGAGCAGGAAGAAGGGCTCGA
AAAGAAACACCGCCGCAGCACTGGTGCCGCTCAGCGTTTTTCACCGGTTT
AATTCGCGTGAATCGGTCGCAGAACCACTCGATGATGCACGTGACAGAGC
CCCCCTGACGGCATGCCTGTCATGGTGA
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