mRNA_Ecto-sp13_S_contig13582.2836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13582.2836.1
Unique NamemRNA_Ecto-sp13_S_contig13582.2836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13582.2836.1 vs. uniprot
Match: A0A6H5KRY8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRY8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.990e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 114
            LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS
Sbjct:  407 LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 444
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BLAST of mRNA_Ecto-sp13_S_contig13582.2836.1 vs. uniprot
Match: I0Z8H1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8H1_COCSC)

HSP 1 Score: 46.2 bits (108), Expect = 2.500e-5
Identity = 17/38 (44.74%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 114
            ++ ++PA+ +P  PA R AALF +KP+W + +LEPY++
Sbjct:   22 MLRHLPAAAMPTDPAARFAALFAVKPRWELPDLEPYLA 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13582.2836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRY8_9PHAE3.990e-16100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I0Z8H1_COCSC2.500e-544.74Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13582contigEcto-sp13_S_contig13582:194..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score80.1
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog2880.D8LLS1
Preferred nameDSCC1
Model size117
KEGG koko:K03876,ko:K11271
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006275,GO:0006464,GO:0006473,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034086,GO:0034088,GO:0034421,GO:0034641,GO:0035753,GO:0036211,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043570,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0098687,GO:0098813,GO:0140014,GO:1900262,GO:1900264,GO:1901360,GO:1901564,GO:1903047,GO:2000112,GO:2000278,GO:2000573
Exons1
EggNOG free text desc.maintenance of mitotic sister chromatid cohesion
EggNOG OGsKOG0798@1,KOG0798@2759
Cds size117
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.0505123-CDS-Ecto-sp13_S_contig13582:193..3101681462725.0505123-CDS-Ecto-sp13_S_contig13582:193..310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13582 194..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13582.2836.1prot_Ecto-sp13_S_contig13582.2836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13582 194..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13582.2836.1

>prot_Ecto-sp13_S_contig13582.2836.1 ID=prot_Ecto-sp13_S_contig13582.2836.1|Name=mRNA_Ecto-sp13_S_contig13582.2836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
LVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS*
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mRNA from alignment at Ecto-sp13_S_contig13582:194..310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13582.2836.1 ID=mRNA_Ecto-sp13_S_contig13582.2836.1|Name=mRNA_Ecto-sp13_S_contig13582.2836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13582:194..310+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGTGTCGTACGTCCCGGCGTCCGGCCTGCCCTTCTCCCCGGCCGAGCG
GCTGGCCGCGCTGTTCCGGATCAAGCCCAAGTGGCCCATGGCAGAGCTCG
AGCCCTACATATCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13582:194..310+

>mRNA_Ecto-sp13_S_contig13582.2836.1 ID=mRNA_Ecto-sp13_S_contig13582.2836.1|Name=mRNA_Ecto-sp13_S_contig13582.2836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13582:194..310+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGTGTCGTACGTCCCGGCGTCCGGCCTGCCCTTCTCCCCGGCCGAGCG
GCTGGCCGCGCTGTTCCGGATCAAGCCCAAGTGGCCCATGGCAGAGCTCG
AGCCCTACATATCGTGA
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