mRNA_Ecto-sp13_S_contig13560.2826.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13560.2826.1
Unique NamemRNA_Ecto-sp13_S_contig13560.2826.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13560.2826.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.930e-6
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:   55 LGPTFSRAQELSFEPRADAFVRNADNYLCDEYWTSWPAVQERAIADGTVMVWHMGTSVGNLMRTL 249
            LG +   A +   E   D FV    +  C   WTSWPAVQE AIA+GTV+V+ +  SVGNL  TL
Sbjct:  167 LGSSVDVALQEETEKGNDRFVHTTGDD-CHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITL 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13560.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA60_9PHAE2.930e-647.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13560contigEcto-sp13_S_contig13560:380..646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size267
Hectar predicted targeting categorysignal peptide
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.3911521-CDS-Ecto-sp13_S_contig13560:379..6461681462724.3911521-CDS-Ecto-sp13_S_contig13560:379..646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13560 380..646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13560.2826.1prot_Ecto-sp13_S_contig13560.2826.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13560 380..646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13560.2826.1

>prot_Ecto-sp13_S_contig13560.2826.1 ID=prot_Ecto-sp13_S_contig13560.2826.1|Name=mRNA_Ecto-sp13_S_contig13560.2826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MRTMGPLGSSLLLVAWMMLGPTFSRAQELSFEPRADAFVRNADNYLCDEY
WTSWPAVQERAIADGTVMVWHMGTSVGNLMRTLMYILPV
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mRNA from alignment at Ecto-sp13_S_contig13560:380..646-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13560.2826.1 ID=mRNA_Ecto-sp13_S_contig13560.2826.1|Name=mRNA_Ecto-sp13_S_contig13560.2826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13560:380..646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACCATGGGGCCCCTCGGATCTTCGTTGCTGCTGGTAGCGTGGAT
GATGCTGGGCCCGACCTTCTCACGGGCACAAGAACTCTCGTTCGAGCCGA
GGGCAGACGCCTTCGTGCGCAACGCGGACAATTATTTGTGCGATGAATAC
TGGACGTCATGGCCCGCAGTTCAGGAGCGAGCCATCGCTGACGGCACCGT
AATGGTCTGGCACATGGGCACATCTGTCGGCAACCTTATGCGAACTCTGA
TGTACATCCTTCCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13560:380..646-

>mRNA_Ecto-sp13_S_contig13560.2826.1 ID=mRNA_Ecto-sp13_S_contig13560.2826.1|Name=mRNA_Ecto-sp13_S_contig13560.2826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13560:380..646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACCATGGGGCCCCTCGGATCTTCGTTGCTGCTGGTAGCGTGGAT
GATGCTGGGCCCGACCTTCTCACGGGCACAAGAACTCTCGTTCGAGCCGA
GGGCAGACGCCTTCGTGCGCAACGCGGACAATTATTTGTGCGATGAATAC
TGGACGTCATGGCCCGCAGTTCAGGAGCGAGCCATCGCTGACGGCACCGT
AATGGTCTGGCACATGGGCACATCTGTCGGCAACCTTATGCGAACTCTGA
TGTACATCCTTCCGGTG
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