mRNA_Ecto-sp13_S_contig10269.283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10269.283.1
Unique NamemRNA_Ecto-sp13_S_contig10269.283.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: D8LBU4_ECTSI (Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU4_ECTSI)

HSP 1 Score: 415 bits (1067), Expect = 2.600e-142
Identity = 196/199 (98.49%), Postives = 197/199 (98.99%), Query Frame = 1
Query:  127 LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFYT 723
            LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTV+EDGETT PNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGS INLQGMGIGNGLTSPAIQYPFYT
Sbjct:   25 LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVNEDGETTMPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSAINLQGMGIGNGLTSPAIQYPFYT 223          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A6S9GAZ6_HETAK (Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GAZ6_HETAK)

HSP 1 Score: 259 bits (662), Expect = 3.870e-81
Identity = 121/189 (64.02%), Postives = 154/189 (81.48%), Query Frame = 1
Query:  154 LCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            LC  + V QLSGY+KI  +G+ +K YFFW  ES+DSPS DPLI+WLTGGPGCSS LALLAENGPCTV+EDG +TT NP SWNS AN++WVDQPAGVGFSYG A  D+D  E  VGEDM+ F++EF A +P+YA+  FYVFGESYGGHY P+V+ R+++G + G+G+ +NL+G+GIGNGLT+P +Q+ +Y
Sbjct:   49 LCDPD-VDQLSGYFKI--DGSVNKNYFFWFFESRDSPSTDPLIIWLTGGPGCSSILALLAENGPCTVNEDGASTTVNPFSWNSHANIMWVDQPAGVGFSYGAAS-DYDRNEAEVGEDMYHFVKEFLAQYPQYAAQDFYVFGESYGGHYVPAVSSRIYRGNQEGDGAPVNLKGIGIGNGLTNPLVQFEYY 233          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A067D239_SAPPC (Carboxypeptidase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D239_SAPPC)

HSP 1 Score: 253 bits (646), Expect = 1.660e-78
Identity = 120/198 (60.61%), Postives = 150/198 (75.76%), Query Frame = 1
Query:  127 LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            L+ APVA + C  +  KQLSGY+KI  +G+  K YF+W  ES+D+P +DP+I+WLTGGPGCSS LALL ENGPC+V++D      NP SWN++AN++W+DQPAGVGFSYG    ++D  E  VG DM+ FLQ FFA HPEYASN FYVFGESY GHY P+VAHR++ G K G    INL+G+GIGNGLTSP +QY +Y
Sbjct:   36 LQDAPVADSFC--DSTKQLSGYFKI--DGSKSKNYFYWFFESRDAPKDDPVIIWLTGGPGCSSMLALLGENGPCSVNDDLSLKR-NPYSWNAKANIMWIDQPAGVGFSYGDKS-EYDTDETMVGNDMYHFLQAFFAAHPEYASNAFYVFGESYAGHYVPAVAHRIYSGNKEGSSPKINLKGIGIGNGLTSPEVQYQYY 227          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: K3XCD6_GLOUD (Carboxypeptidase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCD6_GLOUD)

HSP 1 Score: 253 bits (646), Expect = 1.790e-78
Identity = 125/198 (63.13%), Postives = 147/198 (74.24%), Query Frame = 1
Query:  127 LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            L  APVAA  C E   KQLSGY+K+   G+  K YF+W  ES+ +PS DPLI+WLTGGPGCSSTLALL ENGPC+V++D  T   NP SWN RAN++WVDQP GVGFSYG    ++D  E  VG+DMF FLQEFFA HPEY    FYVFGESY GHY P++AHRV+ G +N EG  INLQG GIGNGLT+P +QY +Y
Sbjct:   40 LSEAPVAAGFCDE--TKQLSGYFKLG--GSKSKNYFYWFFESRGTPSIDPLIIWLTGGPGCSSTLALLEENGPCSVNDD-LTLKRNPFSWNERANIMWVDQPIGVGFSYGDKS-EYDTSEKEVGDDMFQFLQEFFAAHPEYQKQEFYVFGESYAGHYVPAIAHRVFTGNQNKEGLHINLQGFGIGNGLTNPQVQYKYY 231          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A7S3M081_9STRA (Carboxypeptidase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M081_9STRA)

HSP 1 Score: 248 bits (632), Expect = 3.600e-77
Identity = 116/180 (64.44%), Postives = 137/180 (76.11%), Query Frame = 1
Query:  181 LSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            +SGYY + DE + DK YFFW  ES+  PS DPL++WLTGGPGCSS LALL ENGPC V EDG +T  NP SWNS +N++W+DQPAGVG+SYG      D  E AVGEDM+ FLQEFF  HPEY SN F+VFGESYGGHYAP++A R++QG  N EG  INL G+G+GNGLT P IQY +Y
Sbjct:    1 MSGYYSV-DEASLDKNYFFWFFESRSKPSTDPLVIWLTGGPGCSSQLALLTENGPCKVSEDGLSTYNNPYSWNSNSNIMWIDQPAGVGYSYGTKN---DKDEAAVGEDMYQFLQEFFTAHPEYVSNHFFVFGESYGGHYAPAIASRIFQGNNNKEGIHINLSGVGVGNGLTDPVIQYQYY 176          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A0A7CM09_9STRA (Carboxypeptidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CM09_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.430e-75
Identity = 117/198 (59.09%), Postives = 148/198 (74.75%), Query Frame = 1
Query:  127 LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            L+S PV    C  +  KQLSGY+KI  +G+  K YFFW  ES+ +P +DP+I+WLTGGPGCSS LALL ENGPC+V++D    + NP SWN +ANV+W+DQPAGVGFSYG A  ++D  E  VG DM+ FLQEFF  HPEYA N FYVFGESY GHY P+VAHR++ G   G  ++IN++G+GIGNGLT+P +QY +Y
Sbjct:   36 LQSHPVEEGFC--DTTKQLSGYFKI--DGSKSKNYFFWFFESRGNPKDDPVIIWLTGGPGCSSMLALLGENGPCSVNDDLSLKS-NPYSWNEKANVMWIDQPAGVGFSYGDAS-EYDTDETMVGNDMYHFLQEFFQAHPEYAKNAFYVFGESYAGHYVPAVAHRIYTGNMEGGKALINMKGIGIGNGLTAPEVQYKYY 227          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A024UWB3_9STRA (Carboxypeptidase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UWB3_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.330e-74
Identity = 116/198 (58.59%), Postives = 145/198 (73.23%), Query Frame = 1
Query:  127 LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            L+ APV    C  +  KQLSGY+KI  +G+  K YF+W  ES+++PS DP ++WLTGGPGCSS LALL ENGPCTV++D  T   NP SWN ++N++W+DQPAGVGFSYG    ++D  E  VG DM+ FLQEFF  HPEYA N FYVFGESY GHY P+VAHR++ G K      INL+G+GIGNGLT+P +QY +Y
Sbjct:   49 LDDAPVEEGFC--DTTKQLSGYFKI--DGSKSKNYFYWFFESRNAPSTDPFVIWLTGGPGCSSILALLGENGPCTVNDD-LTIKRNPFSWNEKSNIMWIDQPAGVGFSYGDTS-EYDTDETMVGNDMYHFLQEFFQVHPEYAKNDFYVFGESYAGHYVPAVAHRIYVGNKESTNPKINLKGIGIGNGLTTPEVQYKWY 240          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A0A7CNV6_9STRA (Carboxypeptidase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CNV6_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.390e-74
Identity = 116/198 (58.59%), Postives = 148/198 (74.75%), Query Frame = 1
Query:  127 LESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            L+ APV A LC  +  KQLSGY+KI  +G+  K YF+W  ES+++P + P+I+WLTGGPGCSS LALL ENGPC+V++D      NP SWN++AN++W+DQPAGVGFSYG    ++D  E  VG DM+ FLQ FFA HPEYA N FYVFGESY GHY P+VAHR+++G K+     IN++G+GIGNGLT+P  QYP Y
Sbjct:   36 LQDAPVEADLC--DSTKQLSGYFKI--DGSKSKNYFYWFFESREAPKDAPVIIWLTGGPGCSSMLALLGENGPCSVNDDLSLKR-NPYSWNAKANIMWIDQPAGVGFSYGDKS-EYDTDETMVGNDMYHFLQAFFAAHPEYAKNAFYVFGESYAGHYVPAVAHRIYEGNKDETAPKINMKGIGIGNGLTAPEKQYPLY 227          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A8K1FCT1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCT1_PYTOL)

HSP 1 Score: 241 bits (616), Expect = 4.610e-74
Identity = 117/201 (58.21%), Postives = 142/201 (70.65%), Query Frame = 1
Query:  118 TCVLESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            T  L +  V    C  +  KQ SGY+KI  +G+  K YF+W  ES+ +PS DP+I+WLTGGPGCSS LAL  ENGPCT+++D  T   NP SWN RAN++W+DQP GVGFSYG    ++D  E  VG+DMF FLQ FF  HPEY    FYVFGESYGGHY P+VAHRV++G  N EG  INLQG GIGNGLT+P +QY +Y
Sbjct:   32 TYTLTTHSVDEGFC--DATKQYSGYFKI--DGSKSKNYFYWFFESRGNPSTDPVIIWLTGGPGCSSILALFVENGPCTINDD-MTLKSNPFSWNERANIMWIDQPVGVGFSYGDKS-EYDSSEKEVGDDMFHFLQSFFKAHPEYQKQDFYVFGESYGGHYVPAVAHRVFEGNNNKEGLHINLQGFGIGNGLTNPQVQYKYY 226          
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Match: A0A2D4BUW4_PYTIN (Carboxypeptidase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUW4_PYTIN)

HSP 1 Score: 241 bits (615), Expect = 6.500e-74
Identity = 118/207 (57.00%), Postives = 145/207 (70.05%), Query Frame = 1
Query:  100 SKSTRQTCVLESAPVAAALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYAPSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFY 720
            S +  +T  L S  V A  C  +  KQ SGY+KI  +G+  K YF+W  ES+  P++DP+I+WLTGGPGCSS LAL  ENGPC++ +D  T   NP SWN RAN++W+DQP GVGFSYG    ++D  E  VG+DMF FLQ FF  HPEY + PFYVFGESYGGHY P+VAHR++ G  N EG  INLQG GIGNGLT P +QY +Y
Sbjct:   23 SDNNNRTYSLTSNAVDAEFC--DATKQYSGYFKI--DGSKSKNYFYWFFESRGXPTKDPVIIWLTGGPGCSSILALFVENGPCSIKDD-LTLERNPYSWNERANIMWIDQPIGVGFSYGDKS-EYDSTEKEVGDDMFHFLQSFFKAHPEYQAQPFYVFGESYGGHYVPAVAHRIFTGNNNKEGLHINLQGFGIGNGLTDPQVQYKYY 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10269.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBU4_ECTSI2.600e-14298.49Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6S9GAZ6_HETAK3.870e-8164.02Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxI... [more]
A0A067D239_SAPPC1.660e-7860.61Carboxypeptidase n=2 Tax=Saprolegnia TaxID=4769 Re... [more]
K3XCD6_GLOUD1.790e-7863.13Carboxypeptidase n=1 Tax=Globisporangium ultimum (... [more]
A0A7S3M081_9STRA3.600e-7764.44Carboxypeptidase n=1 Tax=Spumella elongata TaxID=8... [more]
A0A0A7CM09_9STRA1.430e-7559.09Carboxypeptidase n=1 Tax=Thraustotheca clavata Tax... [more]
A0A024UWB3_9STRA1.330e-7458.59Carboxypeptidase n=2 Tax=Aphanomyces invadans TaxI... [more]
A0A0A7CNV6_9STRA1.390e-7458.59Carboxypeptidase n=1 Tax=Achlya hypogyna TaxID=120... [more]
A0A8K1FCT1_PYTOL4.610e-7458.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BUW4_PYTIN6.500e-7457.00Carboxypeptidase n=1 Tax=Pythium insidiosum TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10269contigEcto-sp13_S_contig10269:2514..5924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score415.2
Seed ortholog evalue2e-113
Seed eggNOG ortholog2880.D8LBU4
Model size723
KEGG koko:K09645,ko:K13289,ko:K16298
KEGG Pathwayko04142,ko04614,map04142,map04614
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
Ec32 ortholog descriptionSerine Carboxypeptidase
Ec32 orthologEc-27_002670.1
EC3.4.16.5
Cds size723
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10269.283.1prot_Ecto-sp13_S_contig10269.283.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10269 2514..5924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462519.741427-CDS-Ecto-sp13_S_contig10269:2513..26071681462519.741427-CDS-Ecto-sp13_S_contig10269:2513..2607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10269 2514..2607 +
1681462519.75238-CDS-Ecto-sp13_S_contig10269:3112..31431681462519.75238-CDS-Ecto-sp13_S_contig10269:3112..3143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10269 3113..3143 +
1681462519.7613866-CDS-Ecto-sp13_S_contig10269:3248..33271681462519.7613866-CDS-Ecto-sp13_S_contig10269:3248..3327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10269 3249..3327 +
1681462519.7702007-CDS-Ecto-sp13_S_contig10269:3729..38651681462519.7702007-CDS-Ecto-sp13_S_contig10269:3729..3865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10269 3730..3865 +
1681462519.7795875-CDS-Ecto-sp13_S_contig10269:4565..47371681462519.7795875-CDS-Ecto-sp13_S_contig10269:4565..4737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10269 4566..4737 +
1681462519.7885654-CDS-Ecto-sp13_S_contig10269:5087..52101681462519.7885654-CDS-Ecto-sp13_S_contig10269:5087..5210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10269 5088..5210 +
1681462519.7999675-CDS-Ecto-sp13_S_contig10269:5836..59241681462519.7999675-CDS-Ecto-sp13_S_contig10269:5836..5924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10269 5837..5924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10269.283.1

>prot_Ecto-sp13_S_contig10269.283.1 ID=prot_Ecto-sp13_S_contig10269.283.1|Name=mRNA_Ecto-sp13_S_contig10269.283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp
TYTEEFFSQVFSLSSGTFTHHAGRHFCTCRGRSSKSTRQTCVLESAPVAA
ALCGEEGVKQLSGYYKIQDEGATDKEYFFWMAESQDSPSEDPLILWLTGG
PGCSSTLALLAENGPCTVDEDGETTTPNPSSWNSRANVIWVDQPAGVGFS
YGKAPGDFDHGEDAVGEDMFWFLQEFFATHPEYASNPFYVFGESYGGHYA
PSVAHRVWQGIKNGEGSVINLQGMGIGNGLTSPAIQYPFYT
back to top

mRNA from alignment at Ecto-sp13_S_contig10269:2514..5924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10269.283.1 ID=mRNA_Ecto-sp13_S_contig10269.283.1|Name=mRNA_Ecto-sp13_S_contig10269.283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10269:2514..5924+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACATATACCGAGGAGTTTTTTTCTCAAGTTTTCTCCCTCTCGTCGGGCAC CTTCACCCATCACGCTGGCCGCCACTTCTGTACGTGCCGGGGCCGTTAAA AGAGGGAGAGGGGAGAGGGGGCCTGCCCATGAGAGACCCCTCGGTTTTAA TGTACCCTCGCTCTTATCGCTGTCCGCACAACAGTGATAGTATGTAGACG TCAGGTCGGCGGTTCGACAGGCGTTGATGTTGAACCGCATCGGCAGGGTG ACCCCGCGTGTGCCCCGCCGCGTGATTTTCTCAATAACCATGCCCTGATG TATTACAACAGCAGTAGTTACGCAACAGCAGTGAAACACTATACCTGCTC GAGTGTGCTGTAGCGCACGCTGGTAGTGCGCCCAGGCAGCAGCAGCACTG GCGTTTGGTTCGATGAAGATGCCCACCCTCACAACGAGAATAGCTGCTTG GGTCTACAACCCAGTCCAACACTCCCACCGAGGTCTGTTTTCGCAGTCCA ATAGAGGCAGAGCGCGGCAGAAGAGCGGCGTGGCTTAGAAACGTACATGT CAGAATAGCGGTTGTCATTGTTAACGGGCAATCTCTTCTGGCAAACAAGG TTCCTCTAAATCAACACGGCAGACGTGCGTGTGGATGTGCGGAGATGCGG AGATGTGAAATATGCCAATGTGTACATGGGAAATGTTGACAACGTTACTT GTCCCTCCCGGTGCTGGGTGTTCTATGAATAGGAGGTTGGAGTCAGCACC CGTGGCCGCCGCGCTGTGCGGGGAGGAAGGCGTGAAGCAGCTGTCGGGAT ACTACAAGATTCAGGTATAGTGAACATGACAACCACGGGCTCGCTCGCGT ACGCTGTAAGTGTTGCCCGGGAGAACCACGGCGCTATCCACTAGTTCTAT CTAGCGTGGTATCCAGCGCTATCTGTGTCTACAATTGTAGCGTGTCGCCG TTTTCAAAAAGAAGACTGACGGGCTGTGTGTATTGGTAGACGAACACCCA GAGCGCTTTTGTAGCGGACTCGCAGAATAATGTTGCCCGAAAAAAACTGA AAATGACAGCGAGCCCGACGCTGCTTGTAACGCCGAAAGTGCCCCTCCGT TCCTGCCGTGCGCGTGCCACACGGAACACACGCGCGGCGCTTCTTGCTTT GTGCCGCTGCTGTAGCGTTCATAGCCCCCTCCCCTCTCCCCTCCCGCTCC CCGGTCTTGCTTTCAGGACGAGGGCGCGACAGACAAGGAGTACTTCTTCT GGATGGCGGAGTCCCAGGACAGCCCTAGCGAAGACCCGCTCATCCTCTGG CTCACGGGCGGCCCAGGGTGCTCTTCGACGCTGGCCCTCCTGGCCGAGAA CGGTGCGATGTTTTATGTAATTTGGCGGGTAGAGAACGTTGGTTTAGTCA ATGTCGCGCTTCTTTTTTAGCGCTCGATGTGGAGTTGGTGGTCTGCGCAA CGAAGAGGAAAAAGGACAGGCGTTGCAGCTCGCGCGACAAGCGTCGCCGG TGTTCGCTTTGTGGCACGAGTGGTGTGTAATCGAGCTTCAATTTGATGGT CTTTGGCGTGCAGGCCACGAGAATGCTCTACTCCATTGCCGCCAGCCCAA AAGATTTCGCAGGGAAAATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG CTGTGCTTTGCCGTGACTCCGCGCCGTTAGCTGTGCGGTCTTGACCTCGG AACGAAGCGAGTCCTATGCATACTTTTTACACAGTTGCCAGAAAATGTTA TAACCAGAAAGGAAGCCATTTTGTGCCCACTAATTACAACAATCCTAACA CAGCTCAAGCATGTTGGTCTACTGCTACCTCCATACAAGACATTTATCCC GACCCCACCCCAAATCCAGTCCAAGCAACACCTTTCCAAGTTGGCCCCAA CCTGACTATGCTAAGCGTGTTACGTTAGGTGCTGTAACGAATCAAAACGT AGCGCAAAGACGCGAAAGGCAACGTAGCGGAGCCAAACCTTGAAAAACGA AACGAAACGAAACTTAACGCAAACGAAACGAAACGAAACGAAACCATGAC AGGCCCGTGTACGGTGGACGAGGACGGCGAGACGACGACGCCCAACCCCA GCTCGTGGAACAGCCGGGCCAACGTGATCTGGGTAGACCAGCCGGCGGGC GTAGGGTTCAGCTACGGCAAGGCTCCCGGAGACTTCGACCACGGGGAAGA CGCGGTTGGGGAAGACATGTTCTGGTGAGAGACAAGACGGGAGGGAGAAA GAGATTAGAAACTGACATGTAGGGGAGGTGCGGTCGGACACCATAAACTC TACTAAAGAACGAGAAGAAGGGGTGTAATCGATTCAAGTGCTACAAGCGT CACCTTCTGCAACGGGGAGAGCAGAGGAAAAACGCTTGTCATCTGCGCCT GTGGTTCAAGGAGGACGTGTATTTGCTGTAGTATGTTACAGCATATTGCG ACCTTATCCTATGTACTTCGTCGTCATTCCACTTCTGCTCTAACTATCTT GCCTCACCCCCTACCCCACCTCTATCCTCTCCACCCGCCCTCCTCTTACC CTCCCCCCCCCGCCCCCCCCCTAGGTTCCTGCAAGAGTTTTTCGCGACGC ACCCCGAATACGCGTCCAACCCGTTCTACGTGTTCGGCGAATCGTATGGG GGTCACTACGCCCCCTCGGTGGCACACAGGGTGTGGCAAGGAATAAAGTG AGTTGAGAATGGAGGGTGCTTTCGCGCTTTGAGTTGCGTGTTCTTGCGCA CGCACCACAGCTATTGAAGGAAAGTTGAACTGCTGTTGGGCTTGGGGTCG GTCGAGGTGGGATGCGAGGCCTTGGAGGAGAGCTTCTCCTGCGCTGAGAG ACTTGTTCTTCGAGTCTCGAAACTTGACATGACATGAACGTTGCTCATTC CTCTTTTTTTTTGTTTTGCCGTACGTTTTTCGCTGGGGTCTCCTGTGTTC TCTTGTGCGTCTCTTACCGCTATCTGTCCGTCCGTCTATCTCTTCGCCCC ACCCTCCACGTCTGTCCTCGCCACGGTCTACCGGGCTATCTGCACCCCGC CCAAGTATTGCAATCGTACATATCACCCTGCCCTTTGCTGCACAGCCATA ACAGAATCTCATCTGTGAACCAATCCGTTGTATGTTTTTAGCACTTTGAC GCCCCATCCCCCATGGTGGTCCCCCTTTTCTTCCTTCCGTTCCATGTGCT CGGCGGCGGGTGCATGTCGACGACCTTTTGCTGCACCGAACTTGCTCTCC ACCGTCTGTCTGACCCAGCCGCCTGCCGCCGGTCGATTCCCAATGCCTTT TGATGCAACCGTTGATGGCGCAGGAACGGAGAGGGTTCCGTGATCAATCT TCAGGGGATGGGCATCGGAAACGGCCTCACGTCTCCTGCGATACAGTACC CCTTCTACACT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10269:2514..5924+

>mRNA_Ecto-sp13_S_contig10269.283.1 ID=mRNA_Ecto-sp13_S_contig10269.283.1|Name=mRNA_Ecto-sp13_S_contig10269.283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10269:2514..5924+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACATATACCGAGGAGTTTTTTTCTCAAGTTTTCTCCCTCTCGTCGGGCAC
CTTCACCCATCACGCTGGCCGCCACTTCTGTACGTGCCGGGGCCGTTCCT
CTAAATCAACACGGCAGACGTGCGTGTTGGAGTCAGCACCCGTGGCCGCC
GCGCTGTGCGGGGAGGAAGGCGTGAAGCAGCTGTCGGGATACTACAAGAT
TCAGGACGAGGGCGCGACAGACAAGGAGTACTTCTTCTGGATGGCGGAGT
CCCAGGACAGCCCTAGCGAAGACCCGCTCATCCTCTGGCTCACGGGCGGC
CCAGGGTGCTCTTCGACGCTGGCCCTCCTGGCCGAGAACGGCCCGTGTAC
GGTGGACGAGGACGGCGAGACGACGACGCCCAACCCCAGCTCGTGGAACA
GCCGGGCCAACGTGATCTGGGTAGACCAGCCGGCGGGCGTAGGGTTCAGC
TACGGCAAGGCTCCCGGAGACTTCGACCACGGGGAAGACGCGGTTGGGGA
AGACATGTTCTGGTTCCTGCAAGAGTTTTTCGCGACGCACCCCGAATACG
CGTCCAACCCGTTCTACGTGTTCGGCGAATCGTATGGGGGTCACTACGCC
CCCTCGGTGGCACACAGGGTGTGGCAAGGAATAAAGAACGGAGAGGGTTC
CGTGATCAATCTTCAGGGGATGGGCATCGGAAACGGCCTCACGTCTCCTG
CGATACAGTACCCCTTCTACACT
back to top