mRNA_Ecto-sp13_S_contig1356.2824.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1356.2824.1
Unique NamemRNA_Ecto-sp13_S_contig1356.2824.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1356.2824.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 5.620e-47
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = -2 
Query:    3 GVVAV---FAAEGEDVEGTADGESGRTSXXXXXXXXRKEAGGTAIPEYNAGGSNTDNNDKLAADVRMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKG 287
            GV A+    AAEGEDVEGTADGESGRTSXXXXXXXXRKEAGGTAIPEYNAGGSNTDNNDKLAADVRMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKG
Sbjct:  136 GVAALRKKLAAEGEDVEGTADGESGRTSXXXXXXXXRKEAGGTAIPEYNAGGSNTDNNDKLAADVRMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKG 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1356.2824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHD0_9PHAE5.620e-4793.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1356contigEcto-sp13_S_contig1356:5750..6082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size333
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.307684-CDS-Ecto-sp13_S_contig1356:5749..60821681462724.307684-CDS-Ecto-sp13_S_contig1356:5749..6082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1356 5750..6082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1356.2824.1prot_Ecto-sp13_S_contig1356.2824.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1356 5750..6082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1356.2824.1

>prot_Ecto-sp13_S_contig1356.2824.1 ID=prot_Ecto-sp13_S_contig1356.2824.1|Name=mRNA_Ecto-sp13_S_contig1356.2824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
APFLACCASTKNWRPTPASRQDEHTPPVFVPPIRTSAASLSLLSVLLPPA
LYSGIAVPPASFLFLFPFCFPDVRPDSPSAVPSTSSPSAAKTATTPDQNV
DCRKKDTTQG*
back to top

mRNA from alignment at Ecto-sp13_S_contig1356:5750..6082+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1356.2824.1 ID=mRNA_Ecto-sp13_S_contig1356.2824.1|Name=mRNA_Ecto-sp13_S_contig1356.2824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1356:5750..6082+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCCTTCCTCGCGTGTTGTGCGTCCACCAAAAATTGGCGGCCAACGCC
TGCCTCCAGGCAGGATGAACACACGCCGCCGGTCTTCGTTCCTCCCATCC
GGACATCCGCTGCCAGCTTGTCGTTGTTGTCTGTGTTGCTCCCGCCAGCA
TTGTACTCGGGGATCGCCGTGCCACCTGCCTCCTTCCTCTTCCTCTTCCC
CTTTTGCTTTCCGGACGTGCGACCCGACTCACCATCTGCTGTACCTTCGA
CATCCTCGCCCTCGGCAGCAAAAACGGCAACGACACCGGACCAGAATGTT
GATTGCCGTAAAAAAGACACGACACAGGGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1356:5750..6082+

>mRNA_Ecto-sp13_S_contig1356.2824.1 ID=mRNA_Ecto-sp13_S_contig1356.2824.1|Name=mRNA_Ecto-sp13_S_contig1356.2824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1356:5750..6082+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCCTTCCTCGCGTGTTGTGCGTCCACCAAAAATTGGCGGCCAACGCC
TGCCTCCAGGCAGGATGAACACACGCCGCCGGTCTTCGTTCCTCCCATCC
GGACATCCGCTGCCAGCTTGTCGTTGTTGTCTGTGTTGCTCCCGCCAGCA
TTGTACTCGGGGATCGCCGTGCCACCTGCCTCCTTCCTCTTCCTCTTCCC
CTTTTGCTTTCCGGACGTGCGACCCGACTCACCATCTGCTGTACCTTCGA
CATCCTCGCCCTCGGCAGCAAAAACGGCAACGACACCGGACCAGAATGTT
GATTGCCGTAAAAAAGACACGACACAGGGATGA
back to top