mRNA_Ecto-sp13_S_contig13479.2769.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13479.2769.1
Unique NamemRNA_Ecto-sp13_S_contig13479.2769.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A6H5KK32_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK32_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 2.590e-88
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1
Query:    1 VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFA ILAPLSIVYIRVMNYFRHVAIELKRLESITK
Sbjct: 1109 VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAFILAPLSIVYIRVMNYFRHVAIELKRLESITK 1260          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A835YZ25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ25_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.080e-49
Identity = 87/138 (63.04%), Postives = 114/138 (82.61%), Query Frame = 1
Query:    1 VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFR 414
            VVSFW+SDP Y RH L FYL GVTASA +VG  +HLRT+ AF +G+ AS++LHG +L RVLHAPVS+FDTTP+GR++QRFSKDTD++DQ LISQ+AM+IN  L ++ +  AI+VATPVFA+ + PLS +Y+ +MN+FR
Sbjct:  992 VVSFWTSDPNYVRHSLKFYLGGVTASAMLVGALAHLRTLLAFAMGVRASRKLHGDMLDRVLHAPVSYFDTTPIGRLVQRFSKDTDEIDQQLISQIAMLINATLSMIGSVGAIVVATPVFALAILPLSSIYLAIMNFFR 1129          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: W7U3C1_9STRA (Multidrug resistance-associated protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3C1_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.250e-33
Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            +++ W+SDPL+ + P   YL GV++ AA+V  F++LRT  +   G+ AS  LH   L++VL AP+ +FDTTP+G ++QRFS D DQVDQ L   + M I     ++    AI+ ATP F+V L P+S +Y+ VMNYFR V  ELKRL+S+++
Sbjct:  957 IIAAWTSDPLHIKRPARVYLLGVSSMAAMVAAFNYLRTYLSVLAGVRASDYLHHRALQKVLGAPMRYFDTTPLGSLVQRFSSDLDQVDQQLPGTLGMFITCVFQLVGTLGAILAATPQFSVALFPISWIYLSVMNYFRAVTRELKRLDSLSR 1108          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: W7TMR9_9STRA (Multidrug resistance-associated protein 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMR9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.260e-33
Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            +++ W+SDPL+ + P   YL GV++ AA+V  F++LRT  +   G+ AS  LH   L++VL AP+ +FDTTP+G ++QRFS D DQVDQ L   + M I     ++    AI+ ATP F+V L P+S +Y+ VMNYFR V  ELKRL+S+++
Sbjct:  516 IIAAWTSDPLHIKRPARVYLLGVSSMAAMVAAFNYLRTYLSVLAGVRASDYLHHRALQKVLGAPMRYFDTTPLGSLVQRFSSDLDQVDQQLPGTLGMFITCVFQLVGTLGAILAATPQFSVALFPISWIYLSVMNYFRAVTRELKRLDSLSR 667          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A4D9CQY4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQY4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.390e-33
Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            +++ W+SDPL+ + P   YL GV++ AA+V  F++LRT  +   G+ AS  LH   L++VL AP+ +FDTTP+G ++QRFS D DQVDQ L   + M I     ++    AI+ ATP F+V L P+S +Y+ VMNYFR V  ELKRL+S+++
Sbjct: 1041 IIAAWTSDPLHIKRPARVYLLGVSSMAAMVAAFNYLRTYLSVLAGVRASDYLHHRALQKVLGAPMRYFDTTPLGSLVQRFSSDLDQVDQQLPGTLGMFITCVFQLVGTLGAILAATPQFSVALFPISWIYLSVMNYFRAVTRELKRLDSLSR 1192          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A482UQK4_9ARCH (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UQK4_9ARCH)

HSP 1 Score: 128 bits (321), Expect = 1.130e-31
Identity = 67/151 (44.37%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    4 VSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            ++FW+SD  Y ++P GFY+    A    V +   +R +    +G+ AS+ LH  +L RVL AP +FFDTTP+GRI+ RFSKD D +D  LIS + M++     ++ +  AII ATP FA+I+ P+ ++Y+ +MNYFR+VA E KR ESI++
Sbjct:  157 ITFWTSDSSYIKNPRGFYMGIYVALGVAVAITGFVRVVSMAIMGIRASRSLHHDILERVLRAPQAFFDTTPLGRILARFSKDLDAIDNLLISNLGMLVMCIFFIIGSLGAIIFATPWFALIVVPVLVIYVLIMNYFRNVAREAKRYESISR 307          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A5A8DKQ7_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DKQ7_CAFRO)

HSP 1 Score: 125 bits (315), Expect = 1.420e-30
Identity = 69/152 (45.39%), Postives = 101/152 (66.45%), Query Frame = 1
Query:    4 VSFWSSDPLYARHPLGFYLFGVTASAAVVG-VFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            VSFW+SDP YA  P+G Y+ G+ A   V   V S +R ++    G+ ASK +H  L   V++AP+SFFDTTP+GR++ RFSKD D +D NL SQ+ M+      +L +  +II+ATP FAV + P+ +VY  +  YFR+V+ E KR++S+T+
Sbjct:  906 VSFWASDPFYALLPIGGYM-GIFAGIGVASAVISMIRLLFFVRAGITASKTMHDTLFSSVIYAPMSFFDTTPLGRVMARFSKDMDAIDFNLSSQLGMLAMTLFLILGSLISIIIATPWFAVAILPIMVVYWMISQYFRNVSRECKRVDSVTR 1056          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A7S1Z8T8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8T8_TRICV)

HSP 1 Score: 122 bits (306), Expect = 1.550e-30
Identity = 65/151 (43.05%), Postives = 92/151 (60.93%), Query Frame = 1
Query:    4 VSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            V+ W+SD  Y RH + FYL     +A ++GV + LR+      G+ AS +LH  +L  VL AP+SFFDTTP GRI+ RFSKD   +D+ L       +   L +L +   I   TP FA+++ PL  +Y RV+NYFR V+ E KRLES+++
Sbjct:  135 VTLWTSDATYQRHSMAFYLGFYFLTAVLLGVVTFLRSFLLARFGVKASTKLHNGILSSVLRAPMSFFDTTPTGRILSRFSKDVHSIDEELSEYFDFFLMCSLAILVSMGTISFVTPRFALLIPPLGFLYFRVLNYFRDVSRETKRLESVSR 285          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A7S2XSX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSX4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.860e-29
Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    4 VSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            VS+W++D  Y+ +   FYL    A A  +G+ +  R+      G+ AS  LH  LLR VL+AP+SFFDTTP GRII RFSKD   +DQ L  Q+   +   + V+ +   I+  TP F V++ PL IVYI ++NYFR V+ E KRLESI++
Sbjct:  736 VSYWTTDTDYSNNSQAFYLGIYGAMAVSLGIITFARSFLLARFGVRASNSLHTNLLRSVLNAPMSFFDTTPTGRIISRFSKDMYAIDQELADQLDFFLMCSINVVVSLGTIVFVTPWFGVVVLPLMIVYIHLLNYFREVSRETKRLESISR 886          
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Match: A0A2R5GN95_9STRA (ABC transporter, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN95_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.730e-28
Identity = 63/151 (41.72%), Postives = 93/151 (61.59%), Query Frame = 1
Query:    4 VSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASKRLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVINGGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESITK 456
            VS WS D  Y    L FYL G    A ++ +FS++R++  FYL L AS++LH  LL  ++HAP+ FFDTTP+GR++ RFSKD    D  L   ++  +     VLA+   +  +TP+F   +  L I+Y+ VM  +R VA ++KRLESI++
Sbjct:  846 VSIWSEDTSYENRSLTFYLVGYAVVAFLLAIFSYIRSILVFYLALRASRQLHKDLLSSIMHAPMQFFDTTPIGRVLNRFSKDLYLADSQLPMSISFFLMMTFSVLASLATVGASTPLFFAAIPFLLIIYLAVMQRYRPVARDMKRLESISR 996          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13479.2769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK32_9PHAE2.590e-8899.34ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835YZ25_9STRA2.080e-4963.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U3C1_9STRA5.250e-3346.05Multidrug resistance-associated protein 1 n=1 Tax=... [more]
W7TMR9_9STRA5.260e-3346.05Multidrug resistance-associated protein 1 n=2 Tax=... [more]
A0A4D9CQY4_9STRA5.390e-3346.05Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A482UQK4_9ARCH1.130e-3144.37ATP-binding cassette domain-containing protein (Fr... [more]
A0A5A8DKQ7_CAFRO1.420e-3045.39Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1Z8T8_TRICV1.550e-3043.05Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2XSX4_9STRA7.860e-2945.03Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A2R5GN95_9STRA3.730e-2841.72ABC transporter, putative n=1 Tax=Hondaea fermenta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13479contigEcto-sp13_S_contig13479:165..1200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score293.9
Seed ortholog evalue4.4e-77
Seed eggNOG ortholog2880.D8LB41
Model size459
KEGG koko:K05665,ko:K05666
KEGG TC3.A.1.208.2,3.A.1.208.8
KEGG Pathwayko01523,ko01524,ko02010,ko04071,ko04976,ko04977,ko05206,map01523,map01524,map02010,map04071,map04976,map04977,map05206
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Cds size459
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462719.4466531-CDS-Ecto-sp13_S_contig13479:164..4221681462719.4466531-CDS-Ecto-sp13_S_contig13479:164..422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13479 165..422 +
1681462719.4582744-CDS-Ecto-sp13_S_contig13479:999..12001681462719.4582744-CDS-Ecto-sp13_S_contig13479:999..1200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13479 1000..1200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13479.2769.1prot_Ecto-sp13_S_contig13479.2769.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13479 165..1200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13479.2769.1

>prot_Ecto-sp13_S_contig13479.2769.1 ID=prot_Ecto-sp13_S_contig13479.2769.1|Name=mRNA_Ecto-sp13_S_contig13479.2769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
VVSFWSSDPLYARHPLGFYLFGVTASAAVVGVFSHLRTMWAFYLGLGASK
RLHGALLRRVLHAPVSFFDTTPVGRIIQRFSKDTDQVDQNLISQVAMVIN
GGLGVLAAGCAIIVATPVFAVILAPLSIVYIRVMNYFRHVAIELKRLESI
TK*
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mRNA from alignment at Ecto-sp13_S_contig13479:165..1200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13479.2769.1 ID=mRNA_Ecto-sp13_S_contig13479.2769.1|Name=mRNA_Ecto-sp13_S_contig13479.2769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13479:165..1200+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGTCCTTCTGGTCGTCAGACCCGCTCTACGCCCGCCACCCCCTGGG TTTCTACCTGTTCGGCGTTACGGCCTCCGCAGCGGTGGTCGGTGTCTTCT CCCATCTCCGCACCATGTGGGCCTTCTACCTCGGCCTCGGCGCCAGCAAG CGTCTGCACGGGGCGCTCTTAAGGAGGGTGTTGCACGCCCCCGTGAGCTT CTTCGATACCACGCCAGTGGGGCGCATTATCCAGAGGTTTTCGAAGGACA CTGACCAGGTACTTGCCCATTCTTTTTTCTTGCGTGTTGTTATGATGTTT GTGTGTGTATGGTTAGGTTAGAGTATTTTGCTGTGCCACCGTCTGTCTGC TTTGCTCTAGTATTTCCAGGGTGTTTGGATGGTACGTTTCATTTGGGTGT ATGTTACCCTGTTGTATTGTCGGTTGTGGCTTGCATTTTCGTTGGTTTTC GAAACTGGGCTGGTGTTGCTCATTTGGGTTCATCAGCTCCTTCCCCTTGT CGACGGTGTGAACTCTATTTGTTGATACTCGCGAAATTAGGATTTTCCGC CGTAGATTACATGGGTTTTCCACTCTAGAGTGAGAAATGAACTCCAACCT GCCGCTGCTTCTAGGTGTCCGACTAGACCACCGGGGAGGTACCCACTTGT GTGCAGCCAAAGGCGCATGCCTCTTTTTCCAGCCTCGCCAAAACCTTGTC TTTGCTGTTTCCCTCAACACGTCCAAGGTCTTGATTTACAACACGGCTAC CGATAGGCACCCCTGCTTGCCTACCTATCGTGTCGAACGTCGCGCACTCC TTCTGCTTCATCGTTATCACATTCTTCACGCACAGGTGGACCAAAACCTG ATATCCCAAGTTGCCATGGTCATCAACGGGGGTCTCGGGGTGCTGGCTGC CGGGTGCGCCATTATCGTAGCCACTCCGGTATTCGCCGTCATCCTGGCGC CCCTCTCCATCGTGTACATCCGAGTGATGAACTATTTCAGACACGTCGCG ATCGAGCTCAAGCGACTGGAGTCCATCACAAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13479:165..1200+

>mRNA_Ecto-sp13_S_contig13479.2769.1 ID=mRNA_Ecto-sp13_S_contig13479.2769.1|Name=mRNA_Ecto-sp13_S_contig13479.2769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13479:165..1200+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGTCCTTCTGGTCGTCAGACCCGCTCTACGCCCGCCACCCCCTGGG
TTTCTACCTGTTCGGCGTTACGGCCTCCGCAGCGGTGGTCGGTGTCTTCT
CCCATCTCCGCACCATGTGGGCCTTCTACCTCGGCCTCGGCGCCAGCAAG
CGTCTGCACGGGGCGCTCTTAAGGAGGGTGTTGCACGCCCCCGTGAGCTT
CTTCGATACCACGCCAGTGGGGCGCATTATCCAGAGGTTTTCGAAGGACA
CTGACCAGGTGGACCAAAACCTGATATCCCAAGTTGCCATGGTCATCAAC
GGGGGTCTCGGGGTGCTGGCTGCCGGGTGCGCCATTATCGTAGCCACTCC
GGTATTCGCCGTCATCCTGGCGCCCCTCTCCATCGTGTACATCCGAGTGA
TGAACTATTTCAGACACGTCGCGATCGAGCTCAAGCGACTGGAGTCCATC
ACAAAGTGA
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