mRNA_Ecto-sp13_S_contig13461.2761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13461.2761.1
Unique NamemRNA_Ecto-sp13_S_contig13461.2761.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13461.2761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13461contigEcto-sp13_S_contig13461:878..1580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size646
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.9569309-UTR-Ecto-sp13_S_contig13461:877..8831681462718.9569309-UTR-Ecto-sp13_S_contig13461:877..883Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13461 878..883 +
1681462718.985662-UTR-Ecto-sp13_S_contig13461:1354..15801681462718.985662-UTR-Ecto-sp13_S_contig13461:1354..1580Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13461 1355..1580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.9667306-CDS-Ecto-sp13_S_contig13461:883..12111681462718.9667306-CDS-Ecto-sp13_S_contig13461:883..1211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13461 884..1211 +
1681462718.9762847-CDS-Ecto-sp13_S_contig13461:1268..13541681462718.9762847-CDS-Ecto-sp13_S_contig13461:1268..1354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13461 1269..1354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13461.2761.1prot_Ecto-sp13_S_contig13461.2761.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13461 884..1354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13461.2761.1

>prot_Ecto-sp13_S_contig13461.2761.1 ID=prot_Ecto-sp13_S_contig13461.2761.1|Name=mRNA_Ecto-sp13_S_contig13461.2761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MWLGMSAPAYSSRGYCCIVRGYVCPKRFFPPPHRETRSRNDLVVPSVRAP
FHPYYTGRQHFVTRHIYWYLHCTGPTWSVSTCSFRSSLTAAPGTVECYED
RMDTVACQRATLSICIATHRKSICMPRGVFALTLDSH*
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mRNA from alignment at Ecto-sp13_S_contig13461:878..1580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13461.2761.1 ID=mRNA_Ecto-sp13_S_contig13461.2761.1|Name=mRNA_Ecto-sp13_S_contig13461.2761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13461:878..1580+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGGCATGTGGCTTGGAATGTCGGCTCCCGCGTACAGCAGTAGAGGTTA
CTGCTGTATAGTGCGCGGGTATGTATGCCCCAAGCGATTTTTCCCGCCTC
CTCATCGGGAAACCCGATCACGGAACGATTTGGTTGTTCCATCGGTGAGA
GCTCCGTTTCACCCGTACTACACCGGGCGCCAGCACTTTGTCACCCGCCA
TATATACTGGTACCTCCACTGTACAGGGCCCACTTGGTCGGTCAGCACAT
GCTCGTTCCGGTCCAGCCTGACCGCGGCACCGGGGACTGTTGAGTGTTAT
GAGGATCGAATGGATACTGTAGCCTGTCAAAGAGCGGTCATATTCAATCA
TCCTACCAGCATTTTTTTTTCTTCCTTTTTTCTTTTTTGTACAACCTTGA
GCATCTGTATCGCCACTCATCGTAAGAGCATTTGTATGCCACGCGGCGTG
TTTGCTCTTACGCTGGATTCGCATTAGCGACGTTATCGAAGCGTGATGCT
GTTTCTGGCAGACCGTCGTCCTTTTTCGCCTGTCAAGTTGTGTCTTCTGA
CGGCTGTTCCCGATTTTGTTCTTTGGCGAAACTCAGACGCGTCGTCAGAG
CGGGCTATGTACTTGTTGTCGTACTTGTAGCCGGTACTATGTTGGTATAC
ATGGTGAACACTTATCAGCAGAGTATAGAGCCTTCTTGTTTAGTGTTTCC
GTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13461:878..1580+

>mRNA_Ecto-sp13_S_contig13461.2761.1 ID=mRNA_Ecto-sp13_S_contig13461.2761.1|Name=mRNA_Ecto-sp13_S_contig13461.2761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13461:878..1580+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGCTTGGAATGTCGGCTCCCGCGTACAGCAGTAGAGGTTACTGCTG
TATAGTGCGCGGGTATGTATGCCCCAAGCGATTTTTCCCGCCTCCTCATC
GGGAAACCCGATCACGGAACGATTTGGTTGTTCCATCGGTGAGAGCTCCG
TTTCACCCGTACTACACCGGGCGCCAGCACTTTGTCACCCGCCATATATA
CTGGTACCTCCACTGTACAGGGCCCACTTGGTCGGTCAGCACATGCTCGT
TCCGGTCCAGCCTGACCGCGGCACCGGGGACTGTTGAGTGTTATGAGGAT
CGAATGGATACTGTAGCCTGTCAAAGAGCAACCTTGAGCATCTGTATCGC
CACTCATCGTAAGAGCATTTGTATGCCACGCGGCGTGTTTGCTCTTACGC
TGGATTCGCATTAG
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