mRNA_Ecto-sp13_S_contig13421.2735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13421.2735.1
Unique NamemRNA_Ecto-sp13_S_contig13421.2735.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13421.2735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13421contigEcto-sp13_S_contig13421:2645..3271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size627
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.345879-UTR-Ecto-sp13_S_contig13421:2644..28151681462717.345879-UTR-Ecto-sp13_S_contig13421:2644..2815Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13421 2645..2815 +
1681462717.3648176-UTR-Ecto-sp13_S_contig13421:3166..32711681462717.3648176-UTR-Ecto-sp13_S_contig13421:3166..3271Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13421 3167..3271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462717.3545566-CDS-Ecto-sp13_S_contig13421:2815..31661681462717.3545566-CDS-Ecto-sp13_S_contig13421:2815..3166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13421 2816..3166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13421.2735.1prot_Ecto-sp13_S_contig13421.2735.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13421 2816..3166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13421.2735.1

>prot_Ecto-sp13_S_contig13421.2735.1 ID=prot_Ecto-sp13_S_contig13421.2735.1|Name=mRNA_Ecto-sp13_S_contig13421.2735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MSSRNRRSCKVFGPAVTSGIVRIMSIKRRIVPRSACGVSTVSRDTCFTRV
ALPTIDVVKICGLRLVRNLSCVPPSCCSVPKYARPTVLASNPIVVLATSP
TQDLAYFLDMNSCHHL*
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mRNA from alignment at Ecto-sp13_S_contig13421:2645..3271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13421.2735.1 ID=mRNA_Ecto-sp13_S_contig13421.2735.1|Name=mRNA_Ecto-sp13_S_contig13421.2735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13421:2645..3271+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCTATCTCCGTCCTCGTGGCCAATCCCGTACTTCTGCTGTGCTGTGGT
ATTAATCTAATTTATTGGGTGCGCTGTGGTTTACGCTTTGGTATTGATGT
AATTTTTTGGCTAGCAAGTCACACAGCAGTGCCAATTCCTTGAAGAACGA
ATCATCGTGATTGGGCAATCAATGTCTTCAAGAAATCGCCGTAGCTGCAA
GGTTTTTGGGCCAGCTGTCACGAGTGGGATAGTAAGAATCATGTCCATAA
AGCGCCGTATCGTCCCACGATCTGCCTGCGGCGTCTCTACAGTATCCCGT
GACACTTGCTTCACACGGGTCGCTTTGCCGACCATCGATGTTGTCAAGAT
ATGCGGGCTGCGTTTAGTTCGAAACCTTTCCTGTGTACCCCCAAGTTGTT
GCTCTGTGCCGAAATACGCCCGACCGACTGTGCTTGCATCGAATCCTATT
GTAGTCCTCGCAACATCACCCACCCAGGATCTAGCTTACTTTTTAGATAT
GAACAGTTGCCATCATTTGTAGGATTGACCGAAATTAGGGAGCGTTGGCT
ACCAGGAGTTGTGACGTGGGAAGAGAAGATAGATGCCTACACCGTAGGTA
CCTTAGTTGCAGAGGTATGAATCCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13421:2645..3271+

>mRNA_Ecto-sp13_S_contig13421.2735.1 ID=mRNA_Ecto-sp13_S_contig13421.2735.1|Name=mRNA_Ecto-sp13_S_contig13421.2735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13421:2645..3271+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTCAAGAAATCGCCGTAGCTGCAAGGTTTTTGGGCCAGCTGTCAC
GAGTGGGATAGTAAGAATCATGTCCATAAAGCGCCGTATCGTCCCACGAT
CTGCCTGCGGCGTCTCTACAGTATCCCGTGACACTTGCTTCACACGGGTC
GCTTTGCCGACCATCGATGTTGTCAAGATATGCGGGCTGCGTTTAGTTCG
AAACCTTTCCTGTGTACCCCCAAGTTGTTGCTCTGTGCCGAAATACGCCC
GACCGACTGTGCTTGCATCGAATCCTATTGTAGTCCTCGCAACATCACCC
ACCCAGGATCTAGCTTACTTTTTAGATATGAACAGTTGCCATCATTTGTA
G
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