mRNA_Ecto-sp13_S_contig13410.2729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13410.2729.1
Unique NamemRNA_Ecto-sp13_S_contig13410.2729.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: A0A7S1NPW1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NPW1_9EUGL)

HSP 1 Score: 129 bits (325), Expect = 1.450e-34
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query:  187 EKAPRPKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYR-DQWKEFPADWFEGLNVKRQVASPT 423
            ++ P PKRN  GELVFPD+P+FRPNL+PK+VL+MGSFGGTYFR IKS VTGKTY  DQWKEFPADWFEGLN+  ++ S T
Sbjct:   59 KRMPIPKRNANGELVFPDYPEFRPNLTPKEVLQMGSFGGTYFRSIKSGVTGKTYAADQWKEFPADWFEGLNINAKITSQT 138          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: UPI001E1DF070 (uncharacterized protein LOC123552860 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF070)

HSP 1 Score: 122 bits (306), Expect = 1.600e-31
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1
Query:  196 PRPKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVASPT 423
            P PKRN KG+LVFPD P+ RPN++PK+VL+ GSFGGTYFRPIKSSVTGK+Y   WKE P DW EGLN+ +QV+S T
Sbjct:   81 PLPKRNAKGQLVFPDHPELRPNMTPKEVLQAGSFGGTYFRPIKSSVTGKSYTQVWKELPKDWLEGLNIGKQVSSST 156          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: A0A7S4DHK3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHK3_HETAK)

HSP 1 Score: 117 bits (293), Expect = 2.790e-31
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 1
Query:  196 PRPKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVAS 417
            P P RN+ GELVFPD+P F+PNL+PK+++++GSFGGTY+RPI+S VTG+ Y  QWKEFP DWFEGL+V +QV S
Sbjct:   52 PVPTRNKFGELVFPDYPDFKPNLTPKEIMQLGSFGGTYWRPIQSGVTGEKYSGQWKEFPMDWFEGLDVGKQVTS 125          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: A0A8J5CNP2_CHIOP (Uncharacterized protein n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CNP2_CHIOP)

HSP 1 Score: 120 bits (302), Expect = 5.040e-31
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:  193 APRPKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVAS 417
            AP P RN  G+LVF D P FRPNLSPKQV++MGSFGGTYFRPIKSSVTG++Y   WKE P DW +GLNVK Q+AS
Sbjct:   74 APAPSRNHLGQLVFEDVPDFRPNLSPKQVVQMGSFGGTYFRPIKSSVTGESYNQVWKELPDDWLKGLNVKTQIAS 148          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: UPI001E1CD374 (uncharacterized protein LOC123508704 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD374)

HSP 1 Score: 120 bits (300), Expect = 5.840e-31
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 1
Query:  172 GASASEKAPRPKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVAS 417
            G+S +  AP P RN  G+LVF   P+F PNL+PKQVL+MGSFGGTYFRPIKS VTG++YRD WKE P+DW EGLN+K QVAS
Sbjct:   38 GSSFTITAPPPTRNALGQLVFEGAPEFCPNLTPKQVLQMGSFGGTYFRPIKSGVTGESYRDVWKELPSDWLEGLNIKTQVAS 119          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: A0A6P8ISI2_ACTTE (uncharacterized protein LOC116304540 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8ISI2_ACTTE)

HSP 1 Score: 119 bits (297), Expect = 2.230e-30
Identity = 48/73 (65.75%), Postives = 66/73 (90.41%), Query Frame = 1
Query:  205 KRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVASPT 423
            KR++ G+LVFPD+P+F+PNL+PK+VL+ GSFGGTY+RPIKSSVTG+ Y  +WKEFP+DWF+GL++ +QV+S T
Sbjct:   67 KRDKHGKLVFPDYPEFKPNLTPKEVLQAGSFGGTYYRPIKSSVTGEKYSGEWKEFPSDWFDGLSINKQVSSST 139          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: W5NBZ2_LEPOC (Uncharacterized LOC102683593 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NBZ2_LEPOC)

HSP 1 Score: 115 bits (289), Expect = 3.250e-30
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 1
Query:  202 PKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVASPT 423
            P++N KG+LVF DFP F PN++PK+VL+ GSFGGTYFRPI SS+T ++Y+D WKE P DW EGL++ +QVASPT
Sbjct:   51 PEKNNKGQLVFKDFPTFGPNMTPKEVLQAGSFGGTYFRPIYSSITKQSYKDVWKELPVDWLEGLDIPKQVASPT 124          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: A0A6J8E641_MYTCO (Uncharacterized protein n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8E641_MYTCO)

HSP 1 Score: 119 bits (297), Expect = 4.170e-30
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1
Query:  202 PKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVAS 417
            P RN+KGELVF D P+ +PN++PK+VL+ GSFGGTYFRPIKSSVTGK+Y  +WKE P DW EGLN++RQVAS
Sbjct:   94 PTRNKKGELVFEDVPELQPNMTPKEVLQAGSFGGTYFRPIKSSVTGKSYSGEWKELPKDWLEGLNIQRQVAS 165          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: A0A1W0E686_9MICR (Uncharacterized protein n=1 Tax=Enterocytozoon hepatopenaei TaxID=646526 RepID=A0A1W0E686_9MICR)

HSP 1 Score: 117 bits (292), Expect = 8.340e-30
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 1
Query:  208 RNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVASPT 423
            R++ G++VF D+P F+PNL+PK+VL++GSFGGTYFRPI+SS+T K+YRD WKEFP+DWFEGLN+ ++V S T
Sbjct:   51 RDKDGKIVFDDYPDFKPNLTPKEVLQLGSFGGTYFRPIESSITNKSYRDVWKEFPSDWFEGLNITKEVTSLT 122          
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Match: A0A7M7T340_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7T340_STRPU)

HSP 1 Score: 117 bits (294), Expect = 8.770e-30
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  196 PRPKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVAS 417
            P PKRN KGELVF D+P+ RPN+SPK+VL+ GSFGGTYFRPIKSSVTG+ Y   WKE P +W EGL++ RQVAS
Sbjct:   81 PLPKRNAKGELVFSDYPEMRPNMSPKEVLQAGSFGGTYFRPIKSSVTGEKYSGVWKELPKNWLEGLDIPRQVAS 154          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13410.2729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1NPW1_9EUGL1.450e-3472.50Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
UPI001E1DF0701.600e-3169.74uncharacterized protein LOC123552860 n=1 Tax=Merce... [more]
A0A7S4DHK3_HETAK2.790e-3166.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J5CNP2_CHIOP5.040e-3172.00Uncharacterized protein n=1 Tax=Chionoecetes opili... [more]
UPI001E1CD3745.840e-3168.29uncharacterized protein LOC123508704 n=1 Tax=Portu... [more]
A0A6P8ISI2_ACTTE2.230e-3065.75uncharacterized protein LOC116304540 n=2 Tax=Actin... [more]
W5NBZ2_LEPOC3.250e-3064.86Uncharacterized LOC102683593 n=2 Tax=Lepisosteus o... [more]
A0A6J8E641_MYTCO4.170e-3070.83Uncharacterized protein n=3 Tax=Mytilus TaxID=6548... [more]
A0A1W0E686_9MICR8.340e-3065.28Uncharacterized protein n=1 Tax=Enterocytozoon hep... [more]
A0A7M7T340_STRPU8.770e-3070.27Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13410contigEcto-sp13_S_contig13410:4082..4731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score117.1
Seed ortholog evalue6.7e-24
Seed eggNOG ortholog7668.SPU_008992-tr
Model size423
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2AUXR@1,2RZV2@2759,39BV2@33154,3BKHA@33208,3D4K3@33213
Cds size423
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.9886298-CDS-Ecto-sp13_S_contig13410:4081..44571681462716.9886298-CDS-Ecto-sp13_S_contig13410:4081..4457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13410 4082..4457 +
1681462717.000539-CDS-Ecto-sp13_S_contig13410:4684..47311681462717.000539-CDS-Ecto-sp13_S_contig13410:4684..4731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13410 4685..4731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13410.2729.1prot_Ecto-sp13_S_contig13410.2729.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13410 4082..4731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13410.2729.1

>prot_Ecto-sp13_S_contig13410.2729.1 ID=prot_Ecto-sp13_S_contig13410.2729.1|Name=mRNA_Ecto-sp13_S_contig13410.2729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
VSKKPRTTSSSSSSSSKSAAGKAKAGEKGKAKSAKQPDADRKASSPTTSS
AGTTDKGGASASEKAPRPKRNQKGELVFPDFPKFRPNLSPKQVLRMGSFG
GTYFRPIKSSVTGKTYRDQWKEFPADWFEGLNVKRQVASPT
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mRNA from alignment at Ecto-sp13_S_contig13410:4082..4731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13410.2729.1 ID=mRNA_Ecto-sp13_S_contig13410.2729.1|Name=mRNA_Ecto-sp13_S_contig13410.2729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13410:4082..4731+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCGAAGAAGCCTCGAACAACGTCGAGCAGCAGCAGCAGCAGCTCGAA GAGTGCCGCAGGGAAGGCCAAAGCCGGGGAGAAAGGAAAGGCGAAGTCTG CCAAACAGCCTGATGCTGACCGCAAAGCGTCGTCTCCTACAACTTCTTCG GCTGGTACTACCGACAAAGGTGGTGCTAGTGCTTCAGAAAAGGCCCCGCG CCCGAAGAGAAACCAAAAAGGGGAGCTCGTCTTTCCTGATTTCCCAAAGT TTCGACCCAACTTGTCACCCAAGCAAGTTCTTCGCATGGGGTCTTTCGGC GGGACGTACTTCAGGCCGATCAAGTCTTCGGTAACTGGAAAGACATACCG CGACCAGTGGAAGGAGTTTCCCGCGGGTAAGTTGCTGCAGTATCCACGGC GAGTGAGACTACTTGAAGACGACATGGAACAAGATGTGTGTGCTCTTAAA ATTTCTGATCGGTGACGTACTGACCGCGCGCGAGCTGAATCAGAGCCTAC CGTCCGAGGCCGTGGTGCTGGCAAGTCTCCACAACACGATCGTGCAATCC AAGTGTTCCGCTTTCGATCGCGTGTGTCTTGTTGTCCTTCGGACTACCAT CAGACTGGTTCGAGGGACTGAATGTGAAGAGGCAGGTGGCCAGCCCCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13410:4082..4731+

>mRNA_Ecto-sp13_S_contig13410.2729.1 ID=mRNA_Ecto-sp13_S_contig13410.2729.1|Name=mRNA_Ecto-sp13_S_contig13410.2729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13410:4082..4731+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCGAAGAAGCCTCGAACAACGTCGAGCAGCAGCAGCAGCAGCTCGAA
GAGTGCCGCAGGGAAGGCCAAAGCCGGGGAGAAAGGAAAGGCGAAGTCTG
CCAAACAGCCTGATGCTGACCGCAAAGCGTCGTCTCCTACAACTTCTTCG
GCTGGTACTACCGACAAAGGTGGTGCTAGTGCTTCAGAAAAGGCCCCGCG
CCCGAAGAGAAACCAAAAAGGGGAGCTCGTCTTTCCTGATTTCCCAAAGT
TTCGACCCAACTTGTCACCCAAGCAAGTTCTTCGCATGGGGTCTTTCGGC
GGGACGTACTTCAGGCCGATCAAGTCTTCGGTAACTGGAAAGACATACCG
CGACCAGTGGAAGGAGTTTCCCGCGGACTGGTTCGAGGGACTGAATGTGA
AGAGGCAGGTGGCCAGCCCCACC
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