mRNA_Ecto-sp13_S_contig1340.2720.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1340.2720.1
Unique NamemRNA_Ecto-sp13_S_contig1340.2720.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1340.2720.1 vs. uniprot
Match: A0A6H5L6U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U7_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.400e-46
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2 
Query:   20 RRAWGRFMVFLSCVGVAGVGCMGRTKRRKRRGAARRRKQVMDWSSNAFSTTSTLSPLMGGKGATAQPPAFGWTGPVRSKRHQV 268
            RRAWGRFMVFLSCVGV GVGCMGRTKRRKRRGAARRRKQVM+WSSNAFSTTSTLSPL+GGKGATAQPPAFGWTGPVRSKRHQV
Sbjct:  526 RRAWGRFMVFLSCVGVVGVGCMGRTKRRKRRGAARRRKQVMEWSSNAFSTTSTLSPLVGGKGATAQPPAFGWTGPVRSKRHQV 608
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1340.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6U7_9PHAE2.400e-4696.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1340contigEcto-sp13_S_contig1340:14284..14658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size375
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.1169264-CDS-Ecto-sp13_S_contig1340:14283..146581681462716.1169264-CDS-Ecto-sp13_S_contig1340:14283..14658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1340 14284..14658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1340.2720.1prot_Ecto-sp13_S_contig1340.2720.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1340 14284..14658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1340.2720.1

>prot_Ecto-sp13_S_contig1340.2720.1 ID=prot_Ecto-sp13_S_contig1340.2720.1|Name=mRNA_Ecto-sp13_S_contig1340.2720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
GGRRRAAEGVGALHGLPVVRRRRGRRVHGPHQEEEEEGGRPAEEAGDGLV
QQRLLDHQHAIPADGGEGRDGATAGIRMDGAGPQQAPSSVRGRGSKQPHH
RSQDRGAPFSTIWNCLRRKGGGGR*
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mRNA from alignment at Ecto-sp13_S_contig1340:14284..14658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1340.2720.1 ID=mRNA_Ecto-sp13_S_contig1340.2720.1|Name=mRNA_Ecto-sp13_S_contig1340.2720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1340:14284..14658+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGCGGCGGAGGGCGGCGGAGGGCGTGGGGGCGCTTCATGGTCTTCC
TGTCGTGCGTCGGCGTCGCGGGCGTCGGGTGCATGGGCCGCACCAAGAGG
AGGAAGAGGAGGGGGGCCGCCCGGCGGAGGAAGCAGGTGATGGATTGGTC
CAGCAACGCCTTCTCGACCACCAGCACGCTATCCCCGCTGATGGGGGGGA
AGGGCGCGACGGCGCAACCGCCGGCATTCGGATGGACGGGGCCGGTCCGC
AGCAAGCGCCATCAAGTGTAAGGGGGAGAGGAAGCAAGCAACCACATCAT
CGGTCTCAAGACCGAGGGGCGCCTTTTTCTACTATCTGGAATTGCTTACG
GCGTAAGGGGGGGGGGGGGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1340:14284..14658+

>mRNA_Ecto-sp13_S_contig1340.2720.1 ID=mRNA_Ecto-sp13_S_contig1340.2720.1|Name=mRNA_Ecto-sp13_S_contig1340.2720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1340:14284..14658+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGCGGCGGAGGGCGGCGGAGGGCGTGGGGGCGCTTCATGGTCTTCC
TGTCGTGCGTCGGCGTCGCGGGCGTCGGGTGCATGGGCCGCACCAAGAGG
AGGAAGAGGAGGGGGGCCGCCCGGCGGAGGAAGCAGGTGATGGATTGGTC
CAGCAACGCCTTCTCGACCACCAGCACGCTATCCCCGCTGATGGGGGGGA
AGGGCGCGACGGCGCAACCGCCGGCATTCGGATGGACGGGGCCGGTCCGC
AGCAAGCGCCATCAAGTGTAAGGGGGAGAGGAAGCAAGCAACCACATCAT
CGGTCTCAAGACCGAGGGGCGCCTTTTTCTACTATCTGGAATTGCTTACG
GCGTAAGGGGGGGGGGGGGAGGTGA
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