mRNA_Ecto-sp13_S_contig10248.272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10248.272.1
Unique NamemRNA_Ecto-sp13_S_contig10248.272.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 2.210e-75
Identity = 119/135 (88.15%), Postives = 121/135 (89.63%), Query Frame = 1
Query:    4 GVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNASYLPPKHPA-------------EFREWLIKCH 369
            GVIHYYPY+GE ETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNA+YLPPKHPA             EFREWLIKCH
Sbjct:  450 GVIHYYPYDGEKETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNANYLPPKHPAVIYPGVRGRNIQKEFREWLIKCH 584          
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.110e-29
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    4 GVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN 171
            GVIHYYPY+GENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKP+
Sbjct:  483 GVIHYYPYDGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPH 538          
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A8B6XHX9_HYDVU (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XHX9_HYDVU)

HSP 1 Score: 79.3 bits (194), Expect = 8.890e-15
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN-KKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQF-LEGDLHTALNASYLPPKHPAEFREWLIKCH 369
            QG + Y+P N   ET P     E +  S   + FW+GRL P S+   L F    +   +K+R+ L  +   RI+G+LFF+++ PISNNKLK+    + DL  A++ +    K P EF++WL +CH
Sbjct:  454 QGCLMYFPNNFGEETLPS----ENNLPSPMFQCFWQGRLAPLSYVNSLEFCAKPEGRTRKQRDCLPDACFNRIRGLLFFNYHTPISNNKLKILLDTQRDLSFAMSEASSTKKLPKEFKKWLQQCH 574          
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: T2MK06_HYDVU (Structural maintenance of chromosomes flexible hinge domain-containing protein 1 (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MK06_HYDVU)

HSP 1 Score: 79.3 bits (194), Expect = 8.920e-15
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN-KKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQF-LEGDLHTALNASYLPPKHPAEFREWLIKCH 369
            QG + Y+P N   ET P     E +  S   + FW+GRL P S+   L F    +   +K+R+ L  +   RI+G+LFF+++ PISNNKLK+    + DL  A++ +    K P EF++WL +CH
Sbjct:  508 QGCLMYFPNNFGEETLPS----ENNLPSPMFQCFWQGRLAPLSYVNSLEFCAKPEGRTRKQRDCLPDACFNRIRGLLFFNYHTPISNNKLKILLDTQRDLSFAMSEASSTKKLPKEFKKWLQQCH 628          
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: UPI001F5F2D4D (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X1 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5F2D4D)

HSP 1 Score: 79.3 bits (194), Expect = 9.490e-15
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPN-KKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQF-LEGDLHTALNASYLPPKHPAEFREWLIKCH 369
            QG + Y+P N   ET P     E +  S   + FW+GRL P S+   L F    +   +K+R+ L  +   RI+G+LFF+++ PISNNKLK+    + DL  A++ +    K P EF++WL +CH
Sbjct:  454 QGCLMYFPNNFGEETLPS----ENNLPSPMFQCFWQGRLAPLSYVNSLEFCAKPEGRTRKQRDCLPDACFNRIRGLLFFNYHTPISNNKLKILLDTQRDLSFAMSEASSTKKLPKEFKKWLQQCH 574          
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A7S2G7B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7B0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.410e-12
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   91 IEAFWEGRLVPESHAAWLPFFPSHKP---NKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQ 276
            ++ FW+ RLVP+S    L FFPS+     + + R+ LG  W +RI G +FFDW+FPISNNKL L+
Sbjct:   26 LDIFWQKRLVPDSVLPRLHFFPSYTGTGLSAQVRDGLGPLWMQRIHGSIFFDWHFPISNNKLYLK 90          
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A6A5BHS3_NAEFO (SMC hinge domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BHS3_NAEFO)

HSP 1 Score: 59.3 bits (142), Expect = 9.750e-8
Identity = 41/137 (29.93%), Postives = 62/137 (45.26%), Query Frame = 1
Query:    1 QGVIHYYPYNGENETRP-----------QVRPDEE---DDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNASYLPPKHPAEFREWLIKCH 369
            +G+I+YYP+    ET P            V  D+E    + +   E FW GRL+       LP+    + N+     +  +  RR+KGMLFFD+ F +S NK+ L          LN  Y        +R+W+ +CH
Sbjct:  656 RGIIYYYPFKQGRETLPIPEELYLEGGKYVPTDQEVPLSERNPGFECFWNGRLLANEKIKNLPWMEKERSNRD----IPDNCYRRVKGMLFFDYAFEVSANKMYLCKQTPLCQALLN--YTDRTLMQRYRKWIKECH 786          
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Match: A0A830HRP0_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HRP0_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 2.170e-6
Identity = 32/97 (32.99%), Postives = 49/97 (50.52%), Query Frame = 1
Query:   91 IEAFWEGRLVPESHAAWLPFFPS---HKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNASYLPPKH-PAEFREWLIKCH 369
             E FWEGRL+P +  A LPF  +    +  K++ E+L      R++G +F    F  + NKL +     DL  AL  +    +H    FR+W+ +CH
Sbjct:  790 FEVFWEGRLIPHTRVATLPFVETVRRRRTKKEDFESLPDEAFGRLRGAIFCGAGFRPTRNKLTMS---DDLAEALTRATAHDRHLERSFRDWISRCH 883          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10248.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JXR4_9PHAE2.210e-7588.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFL9_ECTSI1.110e-2996.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8B6XHX9_HYDVU8.890e-1537.60structural maintenance of chromosomes flexible hin... [more]
T2MK06_HYDVU8.920e-1537.60Structural maintenance of chromosomes flexible hin... [more]
UPI001F5F2D4D9.490e-1537.60structural maintenance of chromosomes flexible hin... [more]
A0A7S2G7B0_9STRA6.410e-1249.23Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6A5BHS3_NAEFO9.750e-829.93SMC hinge domain-containing protein n=1 Tax=Naegle... [more]
A0A830HRP0_9CHLO2.170e-632.99Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10248contigEcto-sp13_S_contig10248:1100..1786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score92.0
Seed ortholog evalue2e-16
Seed eggNOG ortholog45351.EDO40062
Model size369
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Structural maintenance of chromosomes flexible hinge
EggNOG OGs28J2Q@1,2QREW@2759,38CQ2@33154,3BH6M@33208
Cds size369
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462518.9287553-CDS-Ecto-sp13_S_contig10248:1099..12661681462518.9287553-CDS-Ecto-sp13_S_contig10248:1099..1266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10248 1100..1266 +
1681462518.9414475-CDS-Ecto-sp13_S_contig10248:1545..17171681462518.9414475-CDS-Ecto-sp13_S_contig10248:1545..1717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10248 1546..1717 +
1681462518.9513385-CDS-Ecto-sp13_S_contig10248:1756..17861681462518.9513385-CDS-Ecto-sp13_S_contig10248:1756..1786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10248 1757..1786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10248.272.1prot_Ecto-sp13_S_contig10248.272.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10248 1100..1786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10248.272.1

>prot_Ecto-sp13_S_contig10248.272.1 ID=prot_Ecto-sp13_S_contig10248.272.1|Name=mRNA_Ecto-sp13_S_contig10248.272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
QGVIHYYPYNGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPF
FPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHT
ALNASYLPPKHPAEFREWLIKCH
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mRNA from alignment at Ecto-sp13_S_contig10248:1100..1786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10248.272.1 ID=mRNA_Ecto-sp13_S_contig10248.272.1|Name=mRNA_Ecto-sp13_S_contig10248.272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10248:1100..1786+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGGTGATCCACTACTATCCTTACAACGGAGAGAATGAGACCAGGCC ACAAGTGAGGCCCGACGAAGAGGACGACGAGTCGATCACCATAGAGGCTT TCTGGGAGGGCCGCTTGGTGCCGGAGAGCCACGCCGCGTGGCTCCCTTTC TTCCCGTCGCACAAGCCGTGAGTTGTCGTTGTTGTTGTTGTTGTTGTTGC TGCTGCTGCATCTGCTGCTGTTGTTGTTGTTGCTGTTGCTACGGCTGTTG TCGTTTGTCATTGTTGTTATTGTTGCCGCCTCTGCAGCTGCTGCTGTTGT TGTTGCTGCTGTTGCTGTTGCTGTGGCTGTGGCTGTTGTCGTCGTCGTGG TCGTCGTTATTGTTGTGCTGCCCCGAAACGCCATGTATTCCGCCGCATAC GTCGTCCGAAGAACCCTCGACCTCCTCCCCCGCTGCCCCCCCACAGGAAC AAGAAGGAAAGAGAGGCGCTCGGCACCAGCTGGAGACGACGCATCAAGGG CATGCTCTTCTTCGACTGGAACTTCCCCATCAGCAACAACAAGCTCAAGC TGCAGTTTCTGGAGGGAGACCTCCACACCGCCCTCAACGCGAGCTACCTC CCGCCCAAGCACCCGGCGGTCATCTACCCCGGGGTGCGGGGACGCAACAT CCACAAGGAGTTCAGGGAGTGGCTCATCAAGTGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10248:1100..1786+

>mRNA_Ecto-sp13_S_contig10248.272.1 ID=mRNA_Ecto-sp13_S_contig10248.272.1|Name=mRNA_Ecto-sp13_S_contig10248.272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10248:1100..1786+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGGTGATCCACTACTATCCTTACAACGGAGAGAATGAGACCAGGCC
ACAAGTGAGGCCCGACGAAGAGGACGACGAGTCGATCACCATAGAGGCTT
TCTGGGAGGGCCGCTTGGTGCCGGAGAGCCACGCCGCGTGGCTCCCTTTC
TTCCCGTCGCACAAGCCGAACAAGAAGGAAAGAGAGGCGCTCGGCACCAG
CTGGAGACGACGCATCAAGGGCATGCTCTTCTTCGACTGGAACTTCCCCA
TCAGCAACAACAAGCTCAAGCTGCAGTTTCTGGAGGGAGACCTCCACACC
GCCCTCAACGCGAGCTACCTCCCGCCCAAGCACCCGGCGGAGTTCAGGGA
GTGGCTCATCAAGTGCCAC
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