mRNA_Ecto-sp13_S_contig1339.2712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1339.2712.1
Unique NamemRNA_Ecto-sp13_S_contig1339.2712.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A6H5L9K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K7_9PHAE)

HSP 1 Score: 622 bits (1603), Expect = 9.680e-213
Identity = 513/585 (87.69%), Postives = 526/585 (89.91%), Query Frame = 3 
Query:  174 MVSGVTQQHRXXXXXXXX--IAAIDGSGGGPSIRFEGITLELSSFSGCQFDFGKSGSLVLSFNGYTGTVSLQSSLSSSGSSTPKIRGG----ADSFALPLCSTSSEAGSLGILDGAEAVAMDQSDYDMALSQLEHGDSPKSSFSATAAGAAASTSPTTAMFTSPSAMRQACEGAQNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPP-----AVSPDAQGPSTAATTIGKPKGKRARRVRGEESTNA---------SGAGAARSSTKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXKENRPATKSPAGGTIVEAMDEEDHDDEAHVQTHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PASPGPLSRSARAQVVAGVGVGARSGDGGVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            MVSGVTQQ+R XXXXXXX  IAA+DGSGGGPSIRFEGITLELSSFSGCQFDFGKSG+LVLSFNG+TGTVSLQSSLSSSGSSTPKIRGG    A S+ALPLC TSSEAGSLG+LDGAEAVAMDQSDYDMALSQLEHGDSPKSSFSATAAGAAAS SP+TAMF SPS +RQACEGAQN GA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         AVSPDAQGPSTAATT GKPKGKRARR                  +   A R+  KT       XXXXXXXXXXXXXXXXXXXXXKEN PATKSPAGGT+VEAMDEED DDEA VQTHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PASPGPLSRSARAQ+VAGVGVGARSGDGGVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFA+ESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR
Sbjct:    1 MVSGVTQQYRGXXXXXXXXXIAAVDGSGGGPSIRFEGITLELSSFSGCQFDFGKSGNLVLSFNGFTGTVSLQSSLSSSGSSTPKIRGGGARGARSYALPLCCTSSEAGSLGVLDGAEAVAMDQSDYDMALSQLEHGDSPKSSFSATAAGAAASRSPSTAMFNSPSTLRQACEGAQNPGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSPDAQGPSTAATTTGKPKGKRARRXXXXXXXXXXXXXXXXXITKTNATRAKDKTKRPAVVAXXXXXXXXXXXXXXXXXXXXXKENHPATKSPAGGTMVEAMDEEDGDDEARVQTHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASPGPLSRSARAQIVAGVGVGARSGDGGVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFATESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 585
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: D8LL74_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL74_ECTSI)

HSP 1 Score: 428 bits (1100), Expect = 1.940e-139
Identity = 363/597 (60.80%), Postives = 374/597 (62.65%), Query Frame = 3 
Query:  174 MVSGVTQQHRXXXXXXXX---IAAIDGSGGGPSIRFEGITLELSSFSGCQFDFGKSGSLVLSFNGYTGTVSLQSSLSSSGSSTPKIRGGADSFALPLCSTSSEAGSLGILDGAEAVAMDQSDYDMALSQLEHGDSPKSSFSATAAGAAASTSPTTAMFTSPSAMRQACEGAQNTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPPAVSPDAQGPSTAATTIGKPKGKRARR-------------------------VRGEESTNASGAGAARSSTKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXKENRPATKSPAGGTIVEAMDEEDHD-DEAHVQTHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PASPGPLSRSARAQVVAGVGVGARSGDGGVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            MVSGVTQQHR XXXXXXX   IAA+DGSGGGPSIRFEGITLELSSFSGCQFDFGKSG+LVLSFNGYTGTVSLQSSLSSSGSSTPKIRG                      +G  A A                           AG                                                                                                     TAPPAVSPDAQGPSTAATT GKPKGKRAR                           R ++ T  +   A  +STKT     XXXXXXXXXXXXXXXXXXXXXXX                EAMDE + D D+AHVQTHVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PASPGPLSRSARAQ+VAGVGVGARSGDGGVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFA+ESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR
Sbjct:    1 MVSGVTQQHRGXXXXXXXXXXIAAVDGSGGGPSIRFEGITLELSSFSGCQFDFGKSGNLVLSFNGYTGTVSLQSSLSSSGSSTPKIRG----------------------EGGAAAA---------------------------AG-----------------------------------------------------------------------------------------------------TAPPAVSPDAQGPSTAATTTGKPKGKRARXXXXXXXXXXXXXXXXXXXXXXXXXAARAKDKTKRA---AVVASTKTARAKRXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXEAMDEGEEDGDDAHVQTHVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASPGPLSRSARAQIVAGVGVGARSGDGGVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFATESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 436
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A024TW41_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW41_9STRA)

HSP 1 Score: 166 bits (421), Expect = 9.710e-41
Identity = 77/137 (56.20%), Postives = 102/137 (74.45%), Query Frame = 3 
Query: 1455 GVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            GV P  RWG TATMIS   ++V GG+ DD++   TL DL+ +D A   WS P+NC+SIPR++H++ ++  KNL+++FGGER VDG  ECL D+MVLDT+  L YPPA+SG  P ARSGHS  ++GTD++VFGG RGR
Sbjct:  270 GVPPSQRWGCTATMISNHRVVVYGGEGDDES---TLADLFVYDVAKAEWSCPLNCESIPRSFHASVYVAAKNLMLVFGGERVVDGSHECLSDLMVLDTECFLWYPPAVSGTPPLARSGHSLTVLGTDVLVFGGSRGR 403
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A8K1CQY2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQY2_PYTOL)

HSP 1 Score: 163 bits (413), Expect = 2.000e-39
Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 3 
Query: 1455 GVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCP-ECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            G  P+ RWGHTAT ISE+ ++V GG ADDD  ++TLGDL+ +D     WSRP+NC+SIPR WH + +++ K L+++FGGER + G   + L DIMVLDTD  L YPPAISG +P ARSGH+  ++G D+VVFGG RGR
Sbjct:  290 GTPPVERWGHTATRISENRVVVYGG-ADDD--ESTLGDLFVYDLNKNEWSRPLNCESIPRTWHDSVYLESKRLMLVFGGERNMGGDQMDVLSDIMVLDTDCFLWYPPAISGVAPIARSGHTCTVVGNDIVVFGGSRGR 424
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A6A5A3P1_9STRA (Uncharacterized protein (Fragment) n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A3P1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.610e-39
Identity = 73/137 (53.28%), Postives = 100/137 (72.99%), Query Frame = 3 
Query: 1455 GVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            GV P  RWG TATM+S   ++V GG+ DD++   TL DL+ +D     WS P+NC+SIPR++H++ ++  KNL+++FGGER +DG  E L D+MVLDT+  L YPPA+SG  P ARSGHS  ++G+D+VVFGG RGR
Sbjct:  190 GVAPSQRWGCTATMVSNQRVVVYGGEGDDES---TLSDLFVYDVVKAEWSCPLNCESIPRSFHASVYVPGKNLMLVFGGERVMDGSHESLSDLMVLDTECFLWYPPAVSGTPPLARSGHSCTVLGSDVVVFGGSRGR 323
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A485L6C0_9STRA (Aste57867_16473 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6C0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.140e-38
Identity = 77/148 (52.03%), Postives = 100/148 (67.57%), Query Frame = 3 
Query: 1464 PMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCPECLDDIMVLDTDIDLL--------------YPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            P  RWG TATM+S   ++V GG++DD++   TL DL+ FD   + WS P+NC+SIPR WHSA F++ KNLL++FGGER V+G  E L D+MVLDT   +L              YPPA+SG  P ARSGHS+ ++G D+VVFGG RGR
Sbjct:  218 PSQRWGCTATMVSNQRIVVYGGESDDES---TLSDLFVFDMVKQEWSCPMNCESIPRTWHSAVFLEQKNLLLVFGGERVVNGGHETLSDVMVLDTGACILFVNPLIATVECFLWYPPAVSGTPPMARSGHSSVVLGNDVVVFGGTRGR 362
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: K3WMW8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMW8_GLOUD)

HSP 1 Score: 160 bits (405), Expect = 2.010e-38
Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 3 
Query: 1455 GVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTVDGCP-ECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            G  P  RWG + T IS++ ++V GG ADDD  +ATLGDL+ +D   + WSRP+NC+SIPRAWH A F++ KNLL++FGGER + G   + L DIMVLDT+  L YPPA+SG +P ARSGH+  ++G D+VVFGG RGR
Sbjct:  269 GTVPAERWGDSVTKISDNRVVVYGG-ADDD--EATLGDLHVYDLKRQEWSRPLNCESIPRAWHDAVFLESKNLLLVFGGERFMGGDQLDVLSDIMVLDTECFLWYPPAVSGVTPMARSGHTCTVVGNDIVVFGGSRGR 403
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A5D6YLM7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YLM7_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.770e-37
Identity = 77/138 (55.80%), Postives = 102/138 (73.91%), Query Frame = 3 
Query: 1455 GVGPMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERTV-DGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            GV P G WG +AT IS   ++V GG ADDD  +ATLGD++ FD  +  WS+P+NC+SIPRAWH A +++ K+LL++ GGER + DG  + L DIMVLDT+  L YPPA+SG  P+ARSGH+  ++G D+VVFGG RGR
Sbjct:  216 GVVPAGHWGDSATKISGDRVVVYGG-ADDD--EATLGDVHVFDLKTREWSKPLNCESIPRAWHDAVYLEAKHLLLVIGGERFMGDGQIDVLSDIMVLDTECFLWYPPAVSGTMPSARSGHTCTVVGDDVVVFGGSRGR 350
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A0P1AKH7_PLAHL (Kelch repeat-containing proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKH7_PLAHL)

HSP 1 Score: 154 bits (390), Expect = 8.480e-37
Identity = 73/136 (53.68%), Postives = 96/136 (70.59%), Query Frame = 3 
Query: 1464 PMGRWGHTATMISESTMMVLGGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNLLVIFGGER--TVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIGTDLVVFGGVRGR 1865
            P+ RWGHTAT IS+  ++V GG  DD+    TLGDL+ FD  +  W+ P+NC++I R WH A F+  KNL+++FGGER  T +G  + L DIMVLDT+  L YPPAI G  P+ARSGH+  +IG ++VVFGG RGR
Sbjct:  210 PLERWGHTATKISDERVVVYGGTDDDER---TLGDLHIFDMKTHRWTTPINCETIARTWHDAVFLSSKNLVLVFGGERSATAEGEFDILSDIMVLDTECFLWYPPAIQGSPPSARSGHTCTVIGNEVVVFGGSRGR 342
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BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Match: A0A4D9CV08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV08_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.250e-36
Identity = 79/157 (50.32%), Postives = 102/157 (64.97%), Query Frame = 3 
Query: 1464 PMGRWGHTATMISESTMMVLGGQADD-DAHQATLGDLYKFDFASES---------------WSRPVNCDSIPRAWHSASFIKDKNLLVIFGGERT-----VDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAIIG--TDLVVFGGVRGR 1865
            P GRWGHTAT I  + M+V GG+ DD D    T GDL+     +                 W +P+NCDS+PRAWHS +F++DKNL+V FGGER       +G  E LDDIMVLDT++ L YPPAI+GK P+ARSGH+A+++G   ++VVFGG RGR
Sbjct:  250 PQGRWGHTATRIGPNRMVVYGGEGDDADGGGCTFGDLHVCTLTAAKNEEGGGEDARAIVVRWEKPINCDSVPRAWHSCTFLEDKNLMVAFGGERAGSAGGKEGVAEVLDDIMVLDTELFLWYPPAITGKPPSARSGHTASLVGGGKEIVVFGGSRGR 406
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1339.2712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9K7_9PHAE9.680e-21387.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL74_ECTSI1.940e-13960.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A024TW41_9STRA9.710e-4156.20Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8K1CQY2_PYTOL2.000e-3956.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A5A3P1_9STRA2.610e-3953.28Uncharacterized protein (Fragment) n=6 Tax=Aphanom... [more]
A0A485L6C0_9STRA1.140e-3852.03Aste57867_16473 protein n=1 Tax=Aphanomyces stella... [more]
K3WMW8_GLOUD2.010e-3856.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6YLM7_9STRA1.770e-3755.80Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0P1AKH7_PLAHL8.480e-3753.68Kelch repeat-containing proteins n=1 Tax=Plasmopar... [more]
A0A4D9CV08_9STRA1.250e-3650.32Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1339contigEcto-sp13_S_contig1339:11556..17458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score435.6
Seed ortholog evalue3.4e-119
Seed eggNOG ortholog2880.D8LL74
Model size1865
KEGG koko:K20285
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-24_002680.1
Cds size1692
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1339.2712.1prot_Ecto-sp13_S_contig1339.2712.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1339 13214..17458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.6433032-UTR-Ecto-sp13_S_contig1339:11555..116831681462715.6433032-UTR-Ecto-sp13_S_contig1339:11555..11683Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1339 11556..11683 +
1681462715.6541066-UTR-Ecto-sp13_S_contig1339:13168..132131681462715.6541066-UTR-Ecto-sp13_S_contig1339:13168..13213Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1339 13169..13213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.6689591-CDS-Ecto-sp13_S_contig1339:13213..134721681462715.6689591-CDS-Ecto-sp13_S_contig1339:13213..13472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1339 13214..13472 +
1681462715.679903-CDS-Ecto-sp13_S_contig1339:14469..154491681462715.679903-CDS-Ecto-sp13_S_contig1339:14469..15449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1339 14470..15449 +
1681462715.6905203-CDS-Ecto-sp13_S_contig1339:15860..160351681462715.6905203-CDS-Ecto-sp13_S_contig1339:15860..16035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1339 15861..16035 +
1681462715.7010713-CDS-Ecto-sp13_S_contig1339:16388..165501681462715.7010713-CDS-Ecto-sp13_S_contig1339:16388..16550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1339 16389..16550 +
1681462715.7119772-CDS-Ecto-sp13_S_contig1339:17342..174581681462715.7119772-CDS-Ecto-sp13_S_contig1339:17342..17458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1339 17343..17458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1339.2712.1

>prot_Ecto-sp13_S_contig1339.2712.1 ID=prot_Ecto-sp13_S_contig1339.2712.1|Name=mRNA_Ecto-sp13_S_contig1339.2712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=564bp
MVSGVTQQHRGGGGGGSSIAAIDGSGGGPSIRFEGITLELSSFSGCQFDF
GKSGSLVLSFNGYTGTVSLQSSLSSSGSSTPKIRGGADSFALPLCSTSSE
AGSLGILDGAEAVAMDQSDYDMALSQLEHGDSPKSSFSATAAGAAASTSP
TTAMFTSPSAMRQACEGAQNTGAAAAAGGGSARKQQKQQQQQPPSHVSPS
SSMKSSGNASVIAQQAASPSAGVGPRNKRSSPSSSSGGAAAAAGTAPPAV
SPDAQGPSTAATTIGKPKGKRARRVRGEESTNASGAGAARSSTKTKRAAV
VASKKTARAKRQPQRKEEDSSPNKENRPATKSPAGGTIVEAMDEEDHDDE
AHVQTHVSDDGSSASEEEEEEEGGAASPSSSAAAAWIAISSSGAAAASPP
ASPGPLSRSARAQVVAGVGVGARSGDGGVGPMGRWGHTATMISESTMMVL
GGQADDDAHQATLGDLYKFDFASESWSRPVNCDSIPRAWHSASFIKDKNL
LVIFGGERTVDGCPECLDDIMVLDTDIDLLYPPAISGKSPTARSGHSAAI
IGTDLVVFGGVRGR
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mRNA from alignment at Ecto-sp13_S_contig1339:11556..17458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1339.2712.1 ID=mRNA_Ecto-sp13_S_contig1339.2712.1|Name=mRNA_Ecto-sp13_S_contig1339.2712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1339:11556..17458+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTACTTTCACTCGGCATACGAAGGGTTCAGTGTGGCAGAGGCTGGGAGC
AGGACGTTATCGAGCGAACTTTTCCCCCGCTCTCCTTTGCTTCGCCATTT
ACGTGTCTGAAGACCAGAGAGACGCGAGGTGAGAGAAGAGGTGTGATTTG
TCAAAACCTTTGTCTGGTCTGGATCGTCGGGGGAAAATTCAAAATGCACA
GCGCAATCGCTGTTCGAGTAAATGATGGTTGCTTCTCTCAGCTCGGCACT
ATCAATGCCTCTTCTAACTCAAAGATGCGCCTTTCTCGATTCAAAGGTAA
AGGGTGGCTCCCATGTAACTCTCGCGCGCTTGCTTTTTAGACTGTTGTAT
TTCCCGTGTTCGTAAGATGCAAGAGTGTTGTATTTTGTGTTTCATGATGA
CGGCCAATTTTTTTGAAAATCCACGAAATACCCAACGCTTGCTCGCGTCG
CGTGTTGCGTATCTCCTTTCGCGAGCCACCAACGAGCGAAGCAGCAGAAC
ACCAACACCTTGAAGCAACCGGCTACTACAGGGGAATAGCACGCCAATTT
TACTCTAGGCACAGCTGCAGCAGTAGCTGCATATTGTTGGTCGCTGGTAT
TTGTACAAATGTGAGCCAGCCGGCCCAACCGACATTTTTTGAAAAGCCAG
CACCCGAGCGAGCGGCATTATCGGCCACATCAAGCACGGCGGTTTTATAA
CAAAAGTACCCCACCCAAGGCATTCCTCATCCCACTGGCTCGTGGGACAC
CAAGAGCTTCCTACGCAACAGCAGTATGTGCACGACATAAGCAACGCATA
TACGAAGACATTCTCAGCGCATGATGTCATGGATTTGAGTGTCCACGCGT
TGGTTGCCGAGCCCCCAATTCAAAATTCTTGATGGGCTCCTGGCGTTGAA
CAATTTCCGTAGGGAGCACATCAGATCCTATCATTAGCCTTCCGTTGCAG
CCAACTACAGCAGTAGTGTCCTTTGTTGTAACCCCACCTACGGGCTCAGA
AGCAACAGGGTCTAGTGTGCGTGCCACCATGGAGGAAAAAACTACAGCAG
TATCGGGCGGACACAACACACATGGCTGCAGCAAGGCAGAGAATGATGGA
GCAGGCTCATCATGTTGGACTAGCTCTCCCTTGCCTTGTACGCATGTCGT
GCGGAGCGACGTATATACATCCGTGCATATTGGTGTCAAGTCTTGACGTT
TTTGACACGGTAGTTACACAACATCAGCAGCAACACAGACAACGGTATTG
ACACACAGGCTCATGCTTTTTTTTTTATGTCGTCGTCCCTACTGAACAAC
AATCACTCTCGCGGTTGTTAATACCTTCCATACTGCTGTCGCCCGTCAAA
CCTAAGCTTCCAAGCGAAGAAGTGCTCTCAGGCCTATTTTTTCCTCATTC
CTCTAGGTATTGTGGCGTGTCTTGCACTCCCTGTGTAGGTCAACGCGAAT
AATGCGGAGAAGATAAAGACAGCGCGCAGGTTGCTGCCATCGCTCCCATT
TCCCTCCCTCCCCGTGTGGAAGACCTTGCAGCACCGCGTACGTATGTATG
TCGAGAAAGAAAAACCCATTTGCGCACGCTGCCTTTCCCCTCCCTCCATG
GTACCGCCCACAGGAGCGAGCGCTTTAAGTTCTCTTCAGACCGAGCCCGA
CACGCAGGATGGTTTCTGGCGTAACGCAACAGCACCGGGGCGGCGGCGGC
GGCGGTAGCTCCATCGCCGCCATCGATGGCAGTGGCGGGGGACCCAGCAT
TCGCTTCGAGGGCATCACCCTAGAGCTGTCGTCGTTCTCCGGCTGCCAGT
TCGACTTCGGGAAGAGCGGGAGCCTTGTCCTTAGCTTCAACGGTTACACC
GGCACAGTGTCCCTCCAGAGCTCTTTGTCGTCTTCTGGGTCCTCCACGCC
CAAGATTCGGGGCGGGGGTGAGAGCGAGCGGCGTGCGATATGTAACAGAA
CAGGTCTCGTCAGTTTCGTTGAAAGTGAAGTGGAAGCAGATTGTTGCTGC
CTGTTGATGTTGGTGTTGTGGGTGTTGTTGTTGTCGTGGTTGTCGTTGTT
TGTAGCTTGTTGTTGCTGCTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGT
TGTCGTACCCTCGAAAAGCCGTGACGGCCTCAGCTCAGTACCCTCTACAC
TCGTATCGGTTCAACTGACATGGTCACCCTCGTTGGTCGCAGGCCAACCA
TCCGCCCCAAAAGTGTCCACACTTATGTAAAACCCATAGCGAAACCATAA
AGGGCGTGAAACAGAAACTGTGACGGTAGCTTGTCCCATGGACAGCTTGT
TTCCCAATCTTACCTTATTTCAGGGTTACGCGTGGGAGTTTTTTTTTTTG
TGGCAACCAACGAGCCCTTCGGGCAGAAGATTTCCATGCACGCACCCGCA
TTGGGACGACCTGGGTTTCGATTGGTCGGGGAGTAGTTACGGGGCTCAAC
CTGCGCGCACGAGAACATTTCCAATTTTGGTTGGGCCCACGGCTTAGATA
TGAGAACTGCTGTCGAGAACACGCCTCCATTTTAGCGATCTACGGACAGC
TGCCGCCACCGTTACCGCCGCCGTGTGCCGTATGACTATATCGCTCGTGC
AGGCGCACGAAAGGAGCTAGAAGGTTTAATTTTCTCCGGGTTAGACAGAA
TTTCCCTCCAAGGGTCGTTCCCGCTGGCAACAACAAGCCAATCAACCCTT
CATGTATCCCTTCTCGTCTTTGCGTGCCACGATGCTTTTCACCGCCACCG
CCGCGTGCCGCATAACACGTGCAAGCGCACGAAGAGCTACACGAACACCG
CTCGCAGCATCCAACCCTCACGTTACCCTTTCCCCTCTTTTGTCGCGTGC
CACGATGCTTTCCCTGCCTCCTCGACCCTCCTCCTCCTCCCCGCCGCCGC
CGCCGCCGCTGTAGCAGACAGCTTCGCCCTCCCGCTGTGCTCTACGAGCA
GCGAGGCCGGGTCCCTCGGAATCCTGGATGGCGCCGAGGCCGTTGCGATG
GACCAGAGCGACTATGACATGGCCCTGTCCCAGCTCGAGCACGGGGACTC
GCCCAAGTCATCCTTCTCAGCAACGGCGGCGGGGGCGGCGGCGTCCACGT
CTCCGACCACCGCCATGTTCACCAGCCCTTCGGCGATGCGGCAAGCCTGC
GAGGGTGCGCAAAACACCGGCGCCGCCGCAGCAGCAGGCGGTGGAAGCGC
GAGGAAGCAGCAGAAGCAGCAGCAGCAGCAACCGCCGTCTCACGTTTCCC
CGTCCAGCTCCATGAAGAGCAGCGGTAATGCATCCGTCATCGCTCAGCAA
GCCGCCAGCCCGTCTGCTGGGGTTGGCCCCCGCAACAAGCGGTCCTCGCC
GTCGTCGTCGTCAGGCGGAGCAGCGGCGGCGGCAGGTACCGCTCCTCCTG
CTGTTTCTCCCGACGCTCAGGGCCCGTCCACAGCTGCGACGACAATTGGC
AAGCCTAAGGGTAAGCGCGCACGGAGGGTGAGGGGAGAGGAGAGCACCAA
CGCTTCCGGCGCCGGCGCCGCTAGAAGTAGTACCAAGACGAAGAGAGCTG
CTGTCGTGGCTTCGAAGAAGACGGCAAGGGCGAAGCGGCAGCCGCAGAGG
AAGGAAGAAGACTCTTCGCCGAACAAGGAGAACCGTCCGGCAACCAAAAG
CCCCGCCGGGGGGACTATCGTTGAGGCTATGGACGAAGAAGACCACGATG
ACGAAGCGCATGTTCAGACTCACGTCAGCGATGACGGAAGCAGCGCATCC
GAGGAGGAGGAAGAGGAGGAGGGAGGGGCGGCGTCCCCGTCTTCTTCCGC
GGCCGCCGCGTGGATCGCGATCTCTTCCTCTGGCGCCGCCGCTGCCTCGC
CGCCGGCTAGCCCAGGCCCGCTCAGCCGGTCAGCCAGGGCACAGGTGTGC
AAAGTTAACTTTTACGTTGGACAACACCCGGCCCGTTTGTTTCGAGTTTG
TTGTTTTTTTCGTGCTCCAGAAACACGAGAATTTGCGACCATGGGTATGT
ATTTAAAGCAAGCAAAGACGGCGACAATATCACAAACCAAATGATGACCT
ATTTTTTTCATCATGTCCCGACTTATTGACGTGCTGAACACCTCTTATTT
ACTATAGGCATGTTTTTCATGACAAGTAAAACAACGATAATCCTAAAAAC
GAAATGACTACCGAATTTACTATGGGTTATTTATCGCATTTCCCGACCAC
TACTTGTTGTTAATACCATGGGCTTGTATTTTTTCACAAGAAAACCCCGG
TAACAATACCACACCTGAACAAAGTTCTCCCCGACCACCACTGCACTGTG
GTCAGGTCGTGGCAGGCGTTGGCGTGGGGGCCAGGAGCGGGGACGGGGGC
GTGGGTCCCATGGGGAGGTGGGGCCACACGGCGACGATGATCTCGGAGTC
GACCATGATGGTGCTCGGGGGTCAGGCGGACGATGACGCCCACCAGGCTA
CGCTCGGCGACCTCTACAAGTTTGACTTCGGTGGGTGGTGGTGGTGCTGG
TTTTGTGGGGTCCTTGGGTGGTGGCGTTTTTGTTGTTGATGTTGTTGTTG
GTGGTGGTGGTGTTCTTGATGCTGTAGTTTGTGTTGTGTGTTGTTGTTGT
CGTAGTTGTTGCTGTTGTTGTTGTTGGCACTTTGGTGAGGTGGTGGTGGT
GGAGAGAGAAAAAAGGGTTTGTTGGAGCATGCCGGTTTTTGTTGGAAGGC
CTCGTAACACCTTTGTATGCGTGCCACACAGGAGGAAGGCCTAATAACAT
CTCGTTTGTATGCTCGCCACACAGAAGAAAATGCCTCATTTCAACTCGTT
TTTTGTCACTGTTGTTGCGCGATATTCCGTTAGCGAGCGAGTCGTGGAGC
CGGCCGGTGAACTGCGACAGCATCCCCCGAGCGTGGCACTCTGCGTCGTT
CATCAAGGACAAGAACCTGCTCGTCATCTTTGGTGGGGAGAGGACGGTGG
ACGGCTGCCCCGAGTGCCTGGACGATATCATGGTGCTCGATACCGGTGCG
ATGGCTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTAGTGG
TTGTGTGTGTAGTGGTGGTGGTGGTGGTGGTCGTTATTGTTTTTTGTAGC
GGTGGTGGCTGTTGTTGTTTTTGTTTTTCTTGTTGTTGTTGCTGCTGCTG
TTGTTGATGTTGTGTGTTGTTATTGGCACTGTTGTGTGGTGGTGGTGGTG
GTTGACGTTGTTGCTGTTGATGGCGTTGCTGTTGATGTCCATGAATGATG
GTCATCGACACTATTGAGAGCTTTCGCCATTAGGACACGCAGCGACGCTG
GCGTAGTGGTACATATGGCGCTTTCTTTCCTGACTTTCTTCTCGGCTCCC
TCCCCCATCGTCTCCGACCTACTGCATCGTTGCCCTAGACTCACACTAAC
GCAACCCGGTGCCCTTGCTACTTCTGCTGTCTACAACATTTAGAGGAAGG
GACCTCATGTTCCCTCCAGACTATTTCGTACGTGGCCCTGCGCATACACA
TCATTTGTGTAGATTTGTTGAACTTGTTGCCCGTCTCTCGGTCTTTCCTC
GCGCCCCGATCGATCGCATCTATGGCGCGTGAATATGTTACAGAAATCGA
CGTTCCACACACACCCTATCAATATCCTCCATGTCACATGAAGATGGTAC
AGAAATCGACCTACGTCTTCCACCCCCTCCCAATCGCCTCCATCGCGCGT
GAAATTGTTTTTGATATCGACCTCCCGCACCTCCCCCCACCCTCTTTCTT
TCCTATCGCATCCATCGCTCGTGACGGCGCTGTAAAGATATCGACCTCCT
GTATCCCCCGGCGATCTCCGGCAAGTCTCCCACCGCGCGGTCGGGACACT
CGGCGGCCATCATCGGCACCGACCTCGTCGTTTTCGGAGGCGTTCGCGGA
AGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1339:11556..17458+

>mRNA_Ecto-sp13_S_contig1339.2712.1 ID=mRNA_Ecto-sp13_S_contig1339.2712.1|Name=mRNA_Ecto-sp13_S_contig1339.2712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1339:11556..17458+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTCTGGCGTAACGCAACAGCACCGGGGCGGCGGCGGCGGCGGTAG
CTCCATCGCCGCCATCGATGGCAGTGGCGGGGGACCCAGCATTCGCTTCG
AGGGCATCACCCTAGAGCTGTCGTCGTTCTCCGGCTGCCAGTTCGACTTC
GGGAAGAGCGGGAGCCTTGTCCTTAGCTTCAACGGTTACACCGGCACAGT
GTCCCTCCAGAGCTCTTTGTCGTCTTCTGGGTCCTCCACGCCCAAGATTC
GGGGCGGGGCAGACAGCTTCGCCCTCCCGCTGTGCTCTACGAGCAGCGAG
GCCGGGTCCCTCGGAATCCTGGATGGCGCCGAGGCCGTTGCGATGGACCA
GAGCGACTATGACATGGCCCTGTCCCAGCTCGAGCACGGGGACTCGCCCA
AGTCATCCTTCTCAGCAACGGCGGCGGGGGCGGCGGCGTCCACGTCTCCG
ACCACCGCCATGTTCACCAGCCCTTCGGCGATGCGGCAAGCCTGCGAGGG
TGCGCAAAACACCGGCGCCGCCGCAGCAGCAGGCGGTGGAAGCGCGAGGA
AGCAGCAGAAGCAGCAGCAGCAGCAACCGCCGTCTCACGTTTCCCCGTCC
AGCTCCATGAAGAGCAGCGGTAATGCATCCGTCATCGCTCAGCAAGCCGC
CAGCCCGTCTGCTGGGGTTGGCCCCCGCAACAAGCGGTCCTCGCCGTCGT
CGTCGTCAGGCGGAGCAGCGGCGGCGGCAGGTACCGCTCCTCCTGCTGTT
TCTCCCGACGCTCAGGGCCCGTCCACAGCTGCGACGACAATTGGCAAGCC
TAAGGGTAAGCGCGCACGGAGGGTGAGGGGAGAGGAGAGCACCAACGCTT
CCGGCGCCGGCGCCGCTAGAAGTAGTACCAAGACGAAGAGAGCTGCTGTC
GTGGCTTCGAAGAAGACGGCAAGGGCGAAGCGGCAGCCGCAGAGGAAGGA
AGAAGACTCTTCGCCGAACAAGGAGAACCGTCCGGCAACCAAAAGCCCCG
CCGGGGGGACTATCGTTGAGGCTATGGACGAAGAAGACCACGATGACGAA
GCGCATGTTCAGACTCACGTCAGCGATGACGGAAGCAGCGCATCCGAGGA
GGAGGAAGAGGAGGAGGGAGGGGCGGCGTCCCCGTCTTCTTCCGCGGCCG
CCGCGTGGATCGCGATCTCTTCCTCTGGCGCCGCCGCTGCCTCGCCGCCG
GCTAGCCCAGGCCCGCTCAGCCGGTCAGCCAGGGCACAGGTCGTGGCAGG
CGTTGGCGTGGGGGCCAGGAGCGGGGACGGGGGCGTGGGTCCCATGGGGA
GGTGGGGCCACACGGCGACGATGATCTCGGAGTCGACCATGATGGTGCTC
GGGGGTCAGGCGGACGATGACGCCCACCAGGCTACGCTCGGCGACCTCTA
CAAGTTTGACTTCGCGAGCGAGTCGTGGAGCCGGCCGGTGAACTGCGACA
GCATCCCCCGAGCGTGGCACTCTGCGTCGTTCATCAAGGACAAGAACCTG
CTCGTCATCTTTGGTGGGGAGAGGACGGTGGACGGCTGCCCCGAGTGCCT
GGACGATATCATGGTGCTCGATACCGATATCGACCTCCTGTATCCCCCGG
CGATCTCCGGCAAGTCTCCCACCGCGCGGTCGGGACACTCGGCGGCCATC
ATCGGCACCGACCTCGTCGTTTTCGGAGGCGTTCGCGGAAGG
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