mRNA_Ecto-sp13_S_contig13388.2710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13388.2710.1
Unique NamemRNA_Ecto-sp13_S_contig13388.2710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13388.2710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13388contigEcto-sp13_S_contig13388:2519..4023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons3
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.2997274-CDS-Ecto-sp13_S_contig13388:2518..25841681462715.2997274-CDS-Ecto-sp13_S_contig13388:2518..2584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13388 2519..2584 -
1681462715.309146-CDS-Ecto-sp13_S_contig13388:3338..34741681462715.309146-CDS-Ecto-sp13_S_contig13388:3338..3474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13388 3339..3474 -
1681462715.3189096-CDS-Ecto-sp13_S_contig13388:3721..39001681462715.3189096-CDS-Ecto-sp13_S_contig13388:3721..3900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13388 3722..3900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.329566-UTR-Ecto-sp13_S_contig13388:3900..40231681462715.329566-UTR-Ecto-sp13_S_contig13388:3900..4023Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13388 3901..4023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13388.2710.1prot_Ecto-sp13_S_contig13388.2710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13388 2519..3900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13388.2710.1

>prot_Ecto-sp13_S_contig13388.2710.1 ID=prot_Ecto-sp13_S_contig13388.2710.1|Name=mRNA_Ecto-sp13_S_contig13388.2710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MVRSHRVRVGTDDQAASEQQHREAAAAAAACGKIIVRLRPVLPQEVADGE
TQTASATTRGGEVKVKLVRTKNYRSARTQHRREREEPPAVLQVDSVCGPD
CSTSEVYATAASRLVDRAVTGGGALLL
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mRNA from alignment at Ecto-sp13_S_contig13388:2519..4023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13388.2710.1 ID=mRNA_Ecto-sp13_S_contig13388.2710.1|Name=mRNA_Ecto-sp13_S_contig13388.2710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13388:2519..4023- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGGAGTGAGGAGTAAGATAATAGAGAGGTTAGGTGTCACCGTCACCT
CCACCAACAGGTGCGTGACACCACCCTTCAACTTGCGTCCGAATCAAGGC
TCCAACCGTCCGCTGTCTACAGCATGGTGAGGAGTCATAGAGTCCGGGTG
GGTACGGATGACCAAGCGGCGAGTGAGCAACAACATCGAGAGGCAGCAGC
AGCAGCAGCGGCATGCGGGAAAATCATCGTTCGATTGAGGCCGGTACTCC
CGCAAGAAGTCGCGGACGGAGAAACACAGACCGCATCGGCAACAACACGC
GGGTCAGTGGTGGCGTGTTTTTCTTGCCTGGAAGAGTAGTGGGGCACATG
CCCTTGTCTTAGGGTTCGTCTTGCGTTGAGTGGGGTGCTGACCCTACTGC
CTCTGCTGCTGCTGCTGCTGCTGTACGTTGGCAATGAAGCAAGACTAATG
GGAGCAAATCTTTTCTGTTCTGAAACAACCCATGGATCCTCGATCATGAT
GAACGCTCACCCGTTAGATCTCGCTGCCGGTGCCACTGCTGTGTTTCAGA
GGCGAGGTGAAGGTGAAGCTTGTGAGAACAAAGAACTACCGAAGCGCACG
CACCCAGCACCGGCGCGAGCGCGAGGAGCCGCCGGCGGTGCTGCAAGTTG
ACAGCGTCTGTGGACCAGACTGCAGTACCTCGGAGGCAAGACGGGACGGG
TTTGACTTTCTTCTTCAGAGCCAGTTTCTCACGCCGCGCCAGTTGCATAG
TCGTCGCCTTGGTACACAAGCACACGCAAGTACAATAAGATGTAGAGATC
CCAGACGCTGGTTGGTGCGTCAAACGTGTTTGGTACACTGGGGCCCAAAT
AGACGGACTGCAAAAAAAGCGAAGCACACAAAAAAACAAGGCAACGTTCA
TGATGCGCTAGAACAAATAATTGCCCTCGTCTCCTGACTGGCATCAAGCC
TTTGCAACAGAGACCCGAGAGTAGACGTGTGCCTTCTAAGCCGCACCATG
CATGGGTGTTGTTCAAGTTCATTCTTTGTCTCAGAAACATGCGCTCATTT
TTTTATCGCCTGTTTGCCTGACGGTAAACGTTTGCTTCGATCGTGATAAA
ATCTCTGGCCAAGGGTCGAAAAATCGGGCCCCCGGCCTCAAATTCAATAT
TCCACCATGACTATCCGTGCCCTAGTACATGAACGAATGCGCCTGGGAGA
GACCATTCGACGAGTAACGATATCACCGTATCCCAAAATAGTCACCTCAT
GGCAGATAAACCCCTCTCCTTTGGATTTCAGCTTATTGAAATATCAGACG
AGAATGAAACATGTTTCCAATAGCAAGACTCCGGGGTACATACGAATACG
AACCAAGGCAGGTGGCCTCCCAGCCAAAACCACTCCGGCAACATGTTAGG
CTGACCGGGACACAACAAACGTGTTCGAATTGTCGGCAGGTTTACGCTAC
CGCCGCCTCACGCCTAGTCGACCGTGCCGTCACCGGGGGTGGCGCACTCT
TACTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13388:2519..4023-

>mRNA_Ecto-sp13_S_contig13388.2710.1 ID=mRNA_Ecto-sp13_S_contig13388.2710.1|Name=mRNA_Ecto-sp13_S_contig13388.2710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13388:2519..4023- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAGGAGTCATAGAGTCCGGGTGGGTACGGATGACCAAGCGGCGAG
TGAGCAACAACATCGAGAGGCAGCAGCAGCAGCAGCGGCATGCGGGAAAA
TCATCGTTCGATTGAGGCCGGTACTCCCGCAAGAAGTCGCGGACGGAGAA
ACACAGACCGCATCGGCAACAACACGCGGAGGCGAGGTGAAGGTGAAGCT
TGTGAGAACAAAGAACTACCGAAGCGCACGCACCCAGCACCGGCGCGAGC
GCGAGGAGCCGCCGGCGGTGCTGCAAGTTGACAGCGTCTGTGGACCAGAC
TGCAGTACCTCGGAGGTTTACGCTACCGCCGCCTCACGCCTAGTCGACCG
TGCCGTCACCGGGGGTGGCGCACTCTTACTG
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