mRNA_Ecto-sp13_S_contig13384.2705.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13384.2705.1
Unique NamemRNA_Ecto-sp13_S_contig13384.2705.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13384.2705.1 vs. uniprot
Match: D7FMS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS8_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.390e-81
Identity = 134/144 (93.06%), Postives = 137/144 (95.14%), Query Frame = 1 
Query:   13 VVDLVSSLELLRDLDLRGNVVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRYMLQRLDRHKRSEARKSAAKTLARSNIHAPIAEPGAQREDLARLHDADFSEGHSHSQHQDPPKKSSMLDLNPSLRTTRAGVRFASSVDTSSS 444
            VVDLVSSLE LRDLDLRGN+VSRMAKYFERAVTRCGDLLATLDGKPVHAQHR MLQRLDRHKRSEARKSAAKTLARSN HAPIAEPGAQRED ARLHD DFS+GHSHS+HQDP KKSSMLDLNPSLRTTRAGVRFASSV TSSS
Sbjct:  211 VVDLVSSLEALRDLDLRGNIVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKTLARSNTHAPIAEPGAQREDSARLHDGDFSKGHSHSEHQDPAKKSSMLDLNPSLRTTRAGVRFASSVGTSSS 354
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13384.2705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMS8_ECTSI1.390e-8193.06Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13384contigEcto-sp13_S_contig13384:2573..3723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score219.2
Seed ortholog evalue1.2e-54
Seed eggNOG ortholog2880.D7FMS8
Model size550
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2CZ6V@1,2S8SX@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_000290.1
Cds size396
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.0370846-UTR-Ecto-sp13_S_contig13384:2572..26451681462715.0370846-UTR-Ecto-sp13_S_contig13384:2572..2645Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13384 2573..2645 -
1681462715.087798-UTR-Ecto-sp13_S_contig13384:3642..37231681462715.087798-UTR-Ecto-sp13_S_contig13384:3642..3723Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13384 3643..3723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.049524-CDS-Ecto-sp13_S_contig13384:2645..28501681462715.049524-CDS-Ecto-sp13_S_contig13384:2645..2850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13384 2646..2850 -
1681462715.0672905-CDS-Ecto-sp13_S_contig13384:3100..32591681462715.0672905-CDS-Ecto-sp13_S_contig13384:3100..3259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13384 3101..3259 -
1681462715.0780785-CDS-Ecto-sp13_S_contig13384:3610..36421681462715.0780785-CDS-Ecto-sp13_S_contig13384:3610..3642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13384 3611..3642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13384.2705.1prot_Ecto-sp13_S_contig13384.2705.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13384 2646..3642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13384.2705.1

>prot_Ecto-sp13_S_contig13384.2705.1 ID=prot_Ecto-sp13_S_contig13384.2705.1|Name=mRNA_Ecto-sp13_S_contig13384.2705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MAKYFERAVTRCGDLLATLDGKPVHAQHRYMLQRLDRHKRSEARKSAAKT
LARSNIHAPIAEPGAQREDLARLHDADFSEGHSHSQHQDPPKKSSMLDLN
PSLRTTRAGVRFASSVDTSSSGTSQMIATSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig13384:2573..3723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13384.2705.1 ID=mRNA_Ecto-sp13_S_contig13384.2705.1|Name=mRNA_Ecto-sp13_S_contig13384.2705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13384:2573..3723- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACACAATAGGTGGTTGATCTGGTGAGCAGTCTGGAGTTGCTGAGGGA
CCTAGACCTCAGAGGCAACGTTGTCAGTCGCATGGCCAAGTACTTCGAGA
GAGCCGTCACAAGGTGAGTTGACGGACGAAGCATTTCGCATGCACGGCTG
CATTGCCGCCAAGTCCAGTGCAACGTGTACTGTTGTTTCTCTGCCAGGCG
TACTCGTGCGAGTGGAACAAGCGTTGCCTGAGGCAACAGTCTTCAAGAAG
AACATATTCTTTTCCATGGCCCTGCATTTGTTGTTGGTAGGAAGCGCTCC
TACGTATGTTGTCCTCGACGATAACAAGACACTATCAACCACGCTTAGAT
TGCAATTTCAGGGTACACAACGACGGGGATGTACAAACGATGCTGATCAA
TTGATGCCATAACCCTTGCAGCAACCGGGATCTCTGTCGACGAATGTAAT
GCACGCCCATCAAGGTGTGGAGATCTCTTGGCGACCCTAGACGGCAAACC
GGTGCATGCGCAACACCGCTATATGCTGCAACGGCTAGACCGCCACAAGC
GTTCCGAGGCTAGGAAGTCCGCCGCTAAAACCCTCGCCCGCTCCAACATC
CATGCGCCCATTGCAGAACCCGGGTGGGTGGAGTGTACAGTGAAAGTGTG
GTGACTCTAGGCGTACTCCGACCATTGATGCCGGGTAGATGTACGCACCT
ACACTTGTCTATAGCGGACATGACAGGCTCGTGCGACACGTGCATTCACA
TCAAGAGCACATTCATTCGTTCACACCCTTCGCCTGTATGTAGAATGATA
GTGCATTGGGTATACCTCACGCTCGCGTCTCTCATCTTGTAGCACACGAT
GTGCGTCTCTCTGCTGCTAACAGGGCCCAACGCGAAGACTTGGCGAGGCT
CCATGACGCAGATTTCTCCGAGGGCCACAGCCACAGCCAGCATCAAGACC
CGCCAAAAAAGTCTTCGATGCTGGACCTGAACCCTTCCTTGCGCACAACG
CGCGCGGGGGTGCGCTTTGCCAGCAGCGTTGACACTTCTTCCAGTGGTAC
AAGTCAGATGATCGCGACAAGCCGTTAATTTCGGTAAATGACCCTTAAAG
GCTTGTCAATGGGAGGATTTTCCGATGCTGTCTTCTTGGGCTTCGCGCTG
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13384:2573..3723-

>mRNA_Ecto-sp13_S_contig13384.2705.1 ID=mRNA_Ecto-sp13_S_contig13384.2705.1|Name=mRNA_Ecto-sp13_S_contig13384.2705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13384:2573..3723- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAAGTACTTCGAGAGAGCCGTCACAAGGTGTGGAGATCTCTTGGC
GACCCTAGACGGCAAACCGGTGCATGCGCAACACCGCTATATGCTGCAAC
GGCTAGACCGCCACAAGCGTTCCGAGGCTAGGAAGTCCGCCGCTAAAACC
CTCGCCCGCTCCAACATCCATGCGCCCATTGCAGAACCCGGGGCCCAACG
CGAAGACTTGGCGAGGCTCCATGACGCAGATTTCTCCGAGGGCCACAGCC
ACAGCCAGCATCAAGACCCGCCAAAAAAGTCTTCGATGCTGGACCTGAAC
CCTTCCTTGCGCACAACGCGCGCGGGGGTGCGCTTTGCCAGCAGCGTTGA
CACTTCTTCCAGTGGTACAAGTCAGATGATCGCGACAAGCCGTTAA
back to top