prot_Ecto-sp13_S_contig1338.2700.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1338.2700.1
Unique Nameprot_Ecto-sp13_S_contig1338.2700.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length280
Homology
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 3.180e-134
Identity = 256/296 (86.49%), Postives = 257/296 (86.82%), Query Frame = 0
Query:    1 MFVLATIKDTVK-----------------VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE 279
            MFVLATIKDTVK                 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYK                 VRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARG  +WS   XXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE
Sbjct:    1 MFVLATIKDTVKSPELVPGDCCLLRMTIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYK-----------------VRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGEWMWSXXXXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE 279          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.080e-68
Identity = 134/280 (47.86%), Postives = 173/280 (61.79%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARG--GGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
            MFVLAT++D +KV P  F    LDVLT  ++ K++++VI NVGL ICLHS+ES+GD  VYPSDG+AHY+A                  FR+L+FRPFVGE+LTGK+  C++ GI VS+ FFE+ +IPK LL  PSV+ +     +W Y D                         DDS+ + + DE+RFRVRTL+FT+V +TA G  QATTVST     G XXXXXXXXX          PP+ R+R TS+D+T   EAP  M+IT S+NE+GLGL SWW
Sbjct:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAE-----------------FRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNP---------------DDSYIMQVGDEIRFRVRTLDFTEVVNTANG-YQATTVSTGPQGGGGXXXXXXXXXRAKGLQEA--PPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 245          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC)

HSP 1 Score: 179 bits (455), Expect = 1.830e-52
Identity = 104/278 (37.41%), Postives = 150/278 (53.96%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
            MFVL  I D +++AP  F  D   VLT +I+ K+A++VIA+VGLCI L+ +  IGD Y++PSDG +H +                 V FRM+VF+PF+GE+L GK+ SCT++ I+VS+DF ++  IP   +Q+PS F +   LW +                         +  D + + LH+EVRFRV  + FT+VT TA G +QAT    A  A+                         R R +SVDL++ +  PSAM I G+++E+GLGL SWW
Sbjct:    1 MFVLCRIADVIQIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTE-----------------VVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEW-------------------KFPGKEDEQDPYYMYLHEEVRFRVTNINFTRVTKTAKG-IQATVTEAADSASS------------------------RRRSSSVDLSEHDPKPSAMQIIGTIDEDGLGLSSWW 217          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.330e-52
Identity = 115/271 (42.44%), Postives = 160/271 (59.04%), Query Frame = 0
Query:    8 KDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
            +D +K AP +F  DA +VL  QIE K+A+RV+ +VGLCI  + + SIGDPY+YPS+G+A                    VRFRM+VFRPFVGEI+TG++ S  ++G+K+S +FFE+  IP  LLQ+P V+    GLW++                         E ++ F + + +EVRF+VRTL FTQ++S+  G L ATT S     AGXXXXXXXXX            P +R R +S+ L+  +E P+ M I G+MN+ GLGL+SWW
Sbjct:    1 EDKIKTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSAIQI-----------------VRFRMVVFRPFVGEIITGRLVSSGREGLKISTEFFEDILIPAALLQAPCVYNPVDGLWTW----------------------KYGEPENDFLMDIGEEVRFKVRTLTFTQLSSSVKG-LTATTTSETGNDAGXXXXXXXXXPG----------PALRRRSSSMGLSPDDEIPAVMQIIGAMNDFGLGLISWW 221          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD)

HSP 1 Score: 177 bits (449), Expect = 1.550e-51
Identity = 105/278 (37.77%), Postives = 150/278 (53.96%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
            MFVL  + D + V P  F  D   VL  +I+ K+A++VIA+VGLCI ++ +  IGD +V+PSDG +H +                 V FRM+VFRPFVGE+L G++ SCT++ I+VS+DF ++  IP   LQ+PS F     LW +                         E  + F + +H+E+RFRV  + FT+VT TA G +QATT   +  AA                   GQ  + R R +SVDL+D +  PSA+ I G+++E+GLGL SWW
Sbjct:    1 MFVLTRLSDVIPVNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQ-----------------VEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVW----------------------KYSEGQEKFYMDMHEEIRFRVTNINFTRVTKTANG-IQATTTEASDKAASE-----------------GQS-LARRRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 220          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A7S2SVH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVH5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.310e-51
Identity = 108/285 (37.89%), Postives = 151/285 (52.98%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQ------PPVVRERGTSVDLTDVEEA--PSAMTITGSMNEEGLGLLSW 277
            MFVL+ ++D V+VAP KF  D ++VL+ +++ K+A++VI N+GLCIC H ++SI +  VYPSDG AH+                  V FR++VFRPFVGE+  G +   T QGI VSLDFFE+  IPK LL  PS +     LW +                          + D     + ++VRF+V  +++T+++ TA G +  TT    RGA+                  GGQ       P VR+R TSVDLTD EE   P AM I GS+ + GLGL++W
Sbjct:    1 MFVLSVLRDVVRVAPDKFDRDLVEVLSEELDKKYANKVIPNIGLCICTHDFKSIEEAKVYPSDGGAHHS-----------------VVFRLIVFRPFVGEVAVGTIVRSTSQGIHVSLDFFEDVFIPKHLLPQPSEYDARAKLWVW----------------------KYEGSGDGGVFHVDEQVRFQVERVDYTELSDTARGVVATTTTVEHRGASA----------------GGGQGSIPPAQPFVRQRSTSVDLTDGEEQEEPPAMMIIGSVQDHGLGLVTW 230          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL)

HSP 1 Score: 173 bits (439), Expect = 5.910e-50
Identity = 104/280 (37.14%), Postives = 149/280 (53.21%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGG--QPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
            MFVL  I D + VAP  F  D   VL  +I+ K+A++VIA+VGLCI ++ +  IGD +V+PSDG +H +                 V FRM+VFRPFVGE+L G++ SC ++ I+VS+DF ++  IP   +Q+PS F     LW +                         E  + F + LH+E+RFRV ++ FT+VT TA G +QATT   +                     N G  +  + R R  SVDL+D +  PSA+ I G+++E+GLGL SWW
Sbjct:    1 MFVLTRISDVIPVAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQ-----------------VEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVW----------------------KYSEGQEKFFMDLHEEIRFRVTSINFTRVTKTAHG-IQATTTEAS-------------DKTTDAAPNAGDMRQSLARGRSASVDLSDTDPTPSAIHILGTIDEDGLGLSSWW 227          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A6G0XPV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV7_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.420e-48
Identity = 102/278 (36.69%), Postives = 150/278 (53.96%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
            MFVL  I D ++VAP  F+ D   VL  +I+ K+A++VIA+VGLCI  + +  IGD Y++PSDG +H +                 V FRM+VFRPF+GEIL GK+ SCT++ I+VS+DF ++  IP   +Q+PS F +   LW +                         E  D + + L++E+RFRV  + FT+V  TATG +QA T +                       +  + P  R R +SVDL++ +  PSA+ I G+++E+GLGL SWW
Sbjct:    1 MFVLCRIADVIQVAPEFFAADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYIHPSDGTSHTE-----------------VIFRMVVFRPFIGEILKGKIISCTEEHIRVSMDFVQDIIIPSYAMQNPSFFDKTERLWEW-------------------KFPGREEGQDPYYMYLNEEIRFRVTNINFTRVLKTATG-IQAVTETA------------------DTIPDKRENPT-RRRSSSVDLSETDPKPSALQIVGTIDEDGLGLSSWW 222          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A024URS8_9STRA (DNA-directed RNA polymerase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024URS8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.710e-47
Identity = 98/278 (35.25%), Postives = 147/278 (52.88%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
            MFVL  + D ++VAP  FS D   VL  +I+ K+A++VIA+VGLCI  + +  IGD YV+PSDG +H                   V FRM+VFRPF+GEIL GK+ +CT++ I+VS++F ++  IP   +Q+PS F +   LW +                         ++ D + + L++EVRFRV  + FT+V  TA G    T  +  +                    +  + P  R R +SVDL+D +  P+A+ I G+++E+GLGL SWW
Sbjct:    1 MFVLCRVADVIQVAPELFSADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYVHPSDGTSHTD-----------------VIFRMVVFRPFIGEILKGKIINCTEEHIRVSMEFMQDIIIPSYAMQNPSFFDKTERLWEW-------------------KFPGREDDQDPYYMYLNEEVRFRVTNINFTRVLKTANGMQAVTEAADTK-------------------PDKSENPT-RRRSSSVDLSDTDPKPAALQIIGTIDEDGLGLSSWW 222          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK)

HSP 1 Score: 163 bits (412), Expect = 2.070e-46
Identity = 99/217 (45.62%), Postives = 129/217 (59.45%), Query Frame = 0
Query:    1 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVF--ARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARG 215
            MFVLA +KD+VK+ PS F  + +  LT +I+ K+A++VI +VGLCICL  +E IGD Y+YP DG+AHYKA+                 FR+LVFRPFVGEI+TG++SS +K+GIKVSL F ++  +P  LLQ+PS F        W Y D                       E  D   + + D  RFRVRTL+FTQV +TA G LQA TVST+ G
Sbjct:    1 MFVLAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKAT-----------------FRLLVFRPFVGEIITGRISSQSKEGIKVSLGFTDDIIVPSYLLQAPSQFDPEERAWTWKYQDEDG--------------------EAQDML-MEVGDACRFRVRTLDFTQVKATAKG-LQAHTVSTSVG 178          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ2_ECTSI3.180e-13486.49RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
A0A835YK61_9STRA2.080e-6847.86RNA polymerase III subunit Rpc25-domain-containing... [more]
A0A067CHA1_SAPPC1.830e-5237.41Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S3H250_9STRA5.330e-5242.44Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K3WAI2_GLOUD1.550e-5137.77Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A7S2SVH5_9STRA4.310e-5137.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1CBB5_PYTOL5.910e-5037.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XPV7_9STRA2.420e-4836.69Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024URS8_9STRA2.710e-4735.25DNA-directed RNA polymerase n=4 Tax=Aphanomyces Ta... [more]
A0A6V1SWR7_HETAK2.070e-4645.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..78
e-value: 2.7E-21
score: 77.3
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..70
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 8..69
e-value: 3.3E-10
score: 40.2
NoneNo IPR availableGENE3D2.40.50.140coord: 97..279
e-value: 1.3E-24
score: 89.0
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 87..279
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 1..70
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 87..279
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 1..70
IPR013238RNA polymerase III, subunit Rpc25PFAMPF08292RNA_pol_Rbc25coord: 96..278
e-value: 1.3E-25
score: 90.1
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 96..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1338contigEcto-sp13_S_contig1338:3366..8998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1338.2700.1mRNA_Ecto-sp13_S_contig1338.2700.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1338 3324..8998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1338.2700.1 ID=prot_Ecto-sp13_S_contig1338.2700.1|Name=mRNA_Ecto-sp13_S_contig1338.2700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHS
YESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGE
ILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDPD
AEDGEGDGDGGGNKGGEGSGAENDDSFSLTLHDEVRFRVRTLEFTQVTST
ATGSLQATTVSTARGAAGASGGGAGGGRGGGAAGNGGQPPVVRERGTSVD
LTDVEEAPSAMTITGSMNEEGLGLLSWWE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036898RNA_pol_Rpb7-like_N_sf
IPR005576Rpb7-like_N
IPR013238RNA_pol_III_Rbc25
IPR012340NA-bd_OB-fold