mRNA_Ecto-sp13_S_contig13329.2665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13329.2665.1
Unique NamemRNA_Ecto-sp13_S_contig13329.2665.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13329.2665.1 vs. uniprot
Match: D8LQD8_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQD8_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.290e-42
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:    2 GTIFSDEHMREKEQGYVMLYEMLLGKGYIQGGGKLKRHVMQYKARLEECLAQAKVSAGLSKDTSNESLLPKSARRHIFPRYV 247
            GT+FSDEHMREKEQGY+MLYEMLLGKG IQGGGKLKRH+MQYKARLEECLA+AKVSAGLSKD SNESLLPKSARRHIFPRY 
Sbjct:   77 GTLFSDEHMREKEQGYIMLYEMLLGKGSIQGGGKLKRHLMQYKARLEECLAEAKVSAGLSKDASNESLLPKSARRHIFPRYA 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13329.2665.1 vs. uniprot
Match: A0A836CJW7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.980e-16
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 2 
Query:    2 GTIFSDEHMREKEQGYVMLYEMLLGKGYIQGGGKLKRHVMQYKARLEECLAQAKVSAGLSKDTSNESLLPKSARRHIFPRYV 247
            G + + E + + +Q +VMLY++L GKG IQGGG LKRH++   A+L   LA  K + GL  D + E LLP +ARRH FPRY 
Sbjct:   64 GGLVNAEDVHDSDQAWVMLYDLLFGKGSIQGGGALKRHLVARDAQLRAALAALKAARGLPPDAAAELLLPDAARRHAFPRYA 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13329.2665.1 vs. uniprot
Match: A0A0P1A4L8_PLAHL (Proliferation-associated nucleolar protein (NOL1) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4L8_PLAHL)

HSP 1 Score: 55.8 bits (133), Expect = 5.210e-6
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:   47 YVMLYEMLLGKGYIQGGGKLKRHVMQYKARLEECLAQAKVSAGLSKDTSNESLLPKSARRH--IFPRYV 247
            +V LY++L G+  IQGGG +K+ ++Q++  L   LA+ K+     K TSNE+LLP   R+H    PRYV
Sbjct:   79 FVALYDLLFGRKIIQGGGFVKKALLQHQTSLRAALARLKIK---HKVTSNEALLPPENRQHHLALPRYV 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13329.2665.1 vs. uniprot
Match: A0A5D6Y5J7_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5J7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.310e-5
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 2 
Query:   47 YVMLYEMLLGKGYIQGGGKLKRHVMQYKARLEECLAQAKVSAGLSKDTSNESLLPKSARRH--IFPRYV 247
            +V LY++L G+G +QGGG LK+ +MQ+    +  L + KV A   K  +NE LLP   RR     PRYV
Sbjct:   76 HVSLYDLLFGRGKVQGGGHLKKELMQFHNAFKAALVRLKVRA---KVATNEELLPAENRRRELALPRYV 141
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13329.2665.1 vs. uniprot
Match: A0A7S0CT59_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CT59_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 1.780e-5
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   50 VMLYEMLLGKGYIQGGGKLKRHVMQYKARLEECLAQAKVSAGLSKDTSNESLLPKSARR-HIFPRYVCR 253
            V+ YE+L G+G IQGGGK+KR +M   ++L E L + K+  G     S++ LLP+S R     PRY CR
Sbjct:   55 VLTYELLFGRGKIQGGGKVKRIIMAKASKLREALTRLKIRLGAQ---SSQDLLPESVRAVDRMPRY-CR 119
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13329.2665.1 vs. uniprot
Match: A0A6A7G4M0_9CRUS (28S rRNA (Cytosine-C(5))-methyltransferase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G4M0_9CRUS)

HSP 1 Score: 54.3 bits (129), Expect = 1.800e-5
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:   17 DEHMREKEQGYVMLYEMLLGKGYIQGGGKLKRHVMQYKARLEECLAQAKVSAGLSKDTSNESLLPKSARRHI-FPRYV 247
            D +++ K    VM+Y++L GKG I G GK+K+ +++ K  L   LA+ K+ AG+ +   N  LLP   ++ + FPRYV
Sbjct:   65 DGNIKSKWLYLVMVYDLLFGKGSIDGSGKVKKEILKCKTALNAKLARLKIKAGVQE---NFQLLPIEFQQTVQFPRYV 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13329.2665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQD8_ECTSI4.290e-4291.46SAM_MT_RSMB_NOP domain-containing protein n=2 Tax=... [more]
A0A836CJW7_9STRA6.980e-1648.78S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A0P1A4L8_PLAHL5.210e-643.48Proliferation-associated nucleolar protein (NOL1) ... [more]
A0A5D6Y5J7_9STRA1.310e-543.48SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A7S0CT59_9EUKA1.780e-544.93Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A6A7G4M0_9CRUS1.800e-538.4628S rRNA (Cytosine-C(5))-methyltransferase n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13329contigEcto-sp13_S_contig13329:1840..3220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score141.0
Seed ortholog evalue3.4e-31
Seed eggNOG ortholog2880.D8LQD8
Model size513
KEGG koko:K15264
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.rRNA base methylation
EggNOG OGsCOG0144@1,KOG2360@2759
EC2.1.1.311
Cds size327
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.2371137-UTR-Ecto-sp13_S_contig13329:1839..18641681462712.2371137-UTR-Ecto-sp13_S_contig13329:1839..1864Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13329 1840..1864 +
1681462712.2740288-UTR-Ecto-sp13_S_contig13329:3059..32201681462712.2740288-UTR-Ecto-sp13_S_contig13329:3059..3220Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13329 3060..3220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462712.2498028-CDS-Ecto-sp13_S_contig13329:1864..19481681462712.2498028-CDS-Ecto-sp13_S_contig13329:1864..1948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13329 1865..1948 +
1681462712.2655945-CDS-Ecto-sp13_S_contig13329:2816..30591681462712.2655945-CDS-Ecto-sp13_S_contig13329:2816..3059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13329 2817..3059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13329.2665.1prot_Ecto-sp13_S_contig13329.2665.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13329 1865..3059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13329.2665.1

>prot_Ecto-sp13_S_contig13329.2665.1 ID=prot_Ecto-sp13_S_contig13329.2665.1|Name=mRNA_Ecto-sp13_S_contig13329.2665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MREKEQGYVMLYEMLLGKGYIQGGGKLKRHVMQYKARLEECLAQAKVSAG
LSKDTSNESLLPKSARRHIFPRYVCRDQDTQDKAGLVGSSSTVSPTTFGC
FFGVCCFC*
back to top

mRNA from alignment at Ecto-sp13_S_contig13329:1840..3220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13329.2665.1 ID=mRNA_Ecto-sp13_S_contig13329.2665.1|Name=mRNA_Ecto-sp13_S_contig13329.2665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13329:1840..3220+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCACTATTTTCTCGGATGAGCACATGAGGGAAAAGGAGCAAGGGTACG
TCATGCTCTACGAAATGCTGCTGGGGAAGGGCTACATCCAGGGTGGGGGA
AAGCTCAAGGTGAGCGATTTAGAGGGAGCTGGTGCCACATAGCGTTGTCA
GACGCCACTCTTGCCGACTCAAGCTTTGACTCTGAGGGGGTGGTGGAATG
GCAGTGTGGTTGATATTCTCATTTAAAGTACTTGCGTGTACTGCATCGTT
GCTCGCGCGAAAACTAGCCTGCACGATGACCCGTGTCGTGCATCATGTCG
GCAGGCATTGATTGGTGCGTGAGTGGTTGTTGGCGTGGAGGTAGGCCATC
TTTTTCATCGTGCCACGCAAGGCCTGTCATTTGTGAGGGGTTAGCAGGGG
GGCTGCTGAACGCCTGCGATTATTTGCAGGTGTATGTAGTGTACAACGAT
TGTTTTCCCTGCAAGGTGGACTCCTTCTAGTCAGTCCCTACATAAATACC
TTCGACTCTTGTTACTCTCCAACCAACTAGCTAAGTTGTTGCTTACACCT
TAGACAGAAAACCGCGTTTGCTCCCTGAACGGTAGTCGGTTTTCATGCCT
CGTATCTCCACTCACAACAATGCGTTGCCGTTTGTTGTGCTAGAGGCTAT
AGTACCGCACCATTTTCCACGTCTGGACCGGCCAGTCAGCGGTGACCACC
TTGACGTGCTATTTGCAGTCGGTTGTTTGAGCAGGTGGCCATAATGCCCG
GAAAGAGTGTGAATACCAAACATTGAAAAGCTGTTCTTTGAAGTGAATTG
TTGCACCATGTAGTCGTCCGGACGAAACGTGCGGAACATTTTATCTTAAA
AGCTGAGAGTTCGCCGATGCCCCTGCCTTCGCTCTTCGACCCCTCTCCAC
ACGCACAACCACAGCTTTCTCGAATTTTTACGACTCGAGTGCATTCCTCC
GACGCGGTTTTCTTTCCTTCTCGGCAGCGACACGTCATGCAGTACAAGGC
GCGCTTGGAGGAGTGTCTCGCGCAGGCGAAGGTTTCGGCGGGACTGTCAA
AAGACACCTCCAACGAGTCTCTCCTCCCCAAGAGCGCCAGGAGACACATC
TTCCCGCGGTATGTATGTAGGGACCAGGACACACAAGACAAGGCAGGGTT
GGTGGGGTCAAGTTCAACCGTTTCACCTACAACATTTGGTTGTTTTTTCG
GTGTGTGTTGTTTTTGCTGAAGGAGAACAACATGCGATGGAAAGGGGAAG
AGTGTCAAGAGCTTGCACATTGGTCGTGGTGTTGATCTTTTATGCTGCTG
TTGGTTTGACTCTTGTTTCGTTTGCGGCCCCGTTGCCAGCAAGGTACACG
GCAAAGTGTGCCACGCTGGCGGCACTTTGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13329:1840..3220+

>mRNA_Ecto-sp13_S_contig13329.2665.1 ID=mRNA_Ecto-sp13_S_contig13329.2665.1|Name=mRNA_Ecto-sp13_S_contig13329.2665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13329:1840..3220+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGAAAAGGAGCAAGGGTACGTCATGCTCTACGAAATGCTGCTGGG
GAAGGGCTACATCCAGGGTGGGGGAAAGCTCAAGCGACACGTCATGCAGT
ACAAGGCGCGCTTGGAGGAGTGTCTCGCGCAGGCGAAGGTTTCGGCGGGA
CTGTCAAAAGACACCTCCAACGAGTCTCTCCTCCCCAAGAGCGCCAGGAG
ACACATCTTCCCGCGGTATGTATGTAGGGACCAGGACACACAAGACAAGG
CAGGGTTGGTGGGGTCAAGTTCAACCGTTTCACCTACAACATTTGGTTGT
TTTTTCGGTGTGTGTTGTTTTTGCTGA
back to top