mRNA_Ecto-sp13_S_contig13318.2658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13318.2658.1
Unique NamemRNA_Ecto-sp13_S_contig13318.2658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13318.2658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13318contigEcto-sp13_S_contig13318:3685..4133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size449
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_003140.1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.7450142-UTR-Ecto-sp13_S_contig13318:3684..38031681462711.7450142-UTR-Ecto-sp13_S_contig13318:3684..3803Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13318 3685..3803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.754052-CDS-Ecto-sp13_S_contig13318:3803..41331681462711.754052-CDS-Ecto-sp13_S_contig13318:3803..4133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13318 3804..4133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13318.2658.1prot_Ecto-sp13_S_contig13318.2658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13318 3804..4133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13318.2658.1

>prot_Ecto-sp13_S_contig13318.2658.1 ID=prot_Ecto-sp13_S_contig13318.2658.1|Name=mRNA_Ecto-sp13_S_contig13318.2658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MTSTVPLLLSLLPTTNHSTAFLFGAGRRGVDRPSNQGQQREGCTSCTTPT
QGGGGEGRGVITAACSDDEAKSRRWEEDLQLEVFISFSKSKLVRQEPRRR
GRTSIGAGAQ
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mRNA from alignment at Ecto-sp13_S_contig13318:3685..4133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13318.2658.1 ID=mRNA_Ecto-sp13_S_contig13318.2658.1|Name=mRNA_Ecto-sp13_S_contig13318.2658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13318:3685..4133+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATATGGATACATGTTCGAACGTTCGAACGGCAATAACGGAAATCTGTAA
ACCAGCACAGCTACAACACATGTACATATGTCTGCATGAGAGGGATGCCC
ATGTTGTTTTGAATTACCTATGACATCAACTGTCCCCCTCCTCCTCTCGT
TGCTGCCAACTACAAACCATTCAACAGCTTTTCTCTTTGGTGCTGGCCGG
CGTGGTGTTGACCGTCCCTCTAATCAAGGCCAACAGCGGGAAGGCTGTAC
GTCCTGTACGACGCCGACGCAGGGCGGGGGGGGGGAGGGAAGGGGGGTGA
TAACTGCGGCCTGTAGCGACGACGAAGCGAAATCTCGGAGGTGGGAGGAA
GATCTTCAATTGGAAGTCTTTATTTCCTTCTCGAAGTCGAAGCTCGTCCG
TCAAGAACCAAGAAGACGTGGACGTACATCCATCGGTGCGGGTGCGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13318:3685..4133+

>mRNA_Ecto-sp13_S_contig13318.2658.1 ID=mRNA_Ecto-sp13_S_contig13318.2658.1|Name=mRNA_Ecto-sp13_S_contig13318.2658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13318:3685..4133+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCAACTGTCCCCCTCCTCCTCTCGTTGCTGCCAACTACAAACCA
TTCAACAGCTTTTCTCTTTGGTGCTGGCCGGCGTGGTGTTGACCGTCCCT
CTAATCAAGGCCAACAGCGGGAAGGCTGTACGTCCTGTACGACGCCGACG
CAGGGCGGGGGGGGGGAGGGAAGGGGGGTGATAACTGCGGCCTGTAGCGA
CGACGAAGCGAAATCTCGGAGGTGGGAGGAAGATCTTCAATTGGAAGTCT
TTATTTCCTTCTCGAAGTCGAAGCTCGTCCGTCAAGAACCAAGAAGACGT
GGACGTACATCCATCGGTGCGGGTGCGCAG
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