mRNA_Ecto-sp13_S_contig13314.2656.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13314.2656.1
Unique NamemRNA_Ecto-sp13_S_contig13314.2656.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13314.2656.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 3.270e-95
Identity = 300/328 (91.46%), Postives = 306/328 (93.29%), Query Frame = 1 
Query:    1 ETTMLNPLTSNKTVVNHLMEYADHNQYLFLATVCRRWSRAWGRRPAVTRAVTT*TSVSQLSYSFHCGLRRTKRICESAGKLGRLHLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDPDNREKETEQKTDGVAEGCPPPDAEMSPAGPEPIRQDFTTAQSSSLEMHDPTPDELERARKCCALHAVIHGDDAPPMEIEEASLHLHPFFSDEDY 984
            E TMLNPLTSNKTVVNHLMEY DHNQYLF ATVCR WSRAWG RPAVTRA T  TSVSQLS+SFHCGLRRTK ICE+A KLGRL LLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDPD+ EKET Q+TDGVAEGCPPPDAEMSPAGPEPIRQDFTTAQSSSLEMHD TPDELERARK CA HAVI+GDDAPP+EIEEA   L P  SDEDY
Sbjct:    2 EKTMLNPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDPDSIEKETGQETDGVAEGCPPPDAEMSPAGPEPIRQDFTTAQSSSLEMHDLTPDELERARKDCAFHAVIYGDDAPPLEIEEALRRLDPLCSDEDY 329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13314.2656.1 vs. uniprot
Match: A0A6H5JGL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL7_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 8.810e-71
Identity = 271/362 (74.86%), Postives = 277/362 (76.52%), Query Frame = 1 
Query:    1 ETTMLNPLTSNKTVVNHLMEYADHNQYLFLATVCRRWSRAWGRRPAVTRAVTT*TSVSQLSYSFHCGLRRTKRICESAGKLGRLHLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------PRDPDNREKETEQKTDGVAEGCPPPDAEMSPAGPEPIRQDFTTAQSSSLEMHDPTPDELERARKCCALHAVIHGDDAPPMEIEEASLHLHPFF 969
            ETTMLNPLTSN TVVNHLMEYADHNQY+FLATVC  WSRA G RPAVTRAVTT T VSQLSYS HC L  TK IC +A KLGRL  LQC +LNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXX                                       PRDP N EKET Q+TDGVAEGCPPPDAEMS AGPEPIRQ+FTTAQSSSLEMHDPTPDELERARK CALHAVI+GDDAPP            FF
Sbjct:    2 ETTMLNPLTSNNTVVNHLMEYADHNQYVFLATVCMGWSRACGGRPAVTRAVTTRTLVSQLSYSLHCSLPGTKGICATAAKLGRLDRLQCTMLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAARGHEDTYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRVLQFCLENGFPRDPGNVEKETGQETDGVAEGCPPPDAEMSTAGPEPIRQNFTTAQSSSLEMHDPTPDELERARKYCALHAVIYGDDAPPFGDRGGIAEQRSFF 363
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13314.2656.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 6.150e-20
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   40 VVNHLMEYADHNQYLFLATVCRRWSRAWGRRPAVTRAVTT*TSVSQLSYSFHCGLRRTKRICESAGKLGRLHLLQCAVLNGCP 288
            +V+ + E+ D NQYLF A+V R W   WG+RP VT+A+T  TSVSQLS SF CGLRRT  +CE+   LGRL LL+ A   GCP
Sbjct:   11 IVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCP 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13314.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWU0_ECTSI3.270e-9591.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGL7_9PHAE8.810e-7174.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI6.150e-2056.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13314contigEcto-sp13_S_contig13314:2295..3281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size987
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_001200.1
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.5943553-CDS-Ecto-sp13_S_contig13314:2294..29841681462711.5943553-CDS-Ecto-sp13_S_contig13314:2294..2984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13314 2295..2984 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.6085558-UTR-Ecto-sp13_S_contig13314:2984..32811681462711.6085558-UTR-Ecto-sp13_S_contig13314:2984..3281Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13314 2985..3281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13314.2656.1prot_Ecto-sp13_S_contig13314.2656.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13314 2295..2984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13314.2656.1

>prot_Ecto-sp13_S_contig13314.2656.1 ID=prot_Ecto-sp13_S_contig13314.2656.1|Name=mRNA_Ecto-sp13_S_contig13314.2656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MVCAEAALRGHLGIIWWARAYGSEWDESTCSAAASGRHLKILQYCREHGC
PWDAGTTASAARCGSLSVLKWARENGCDWDEDTCTSAAFGGHLEILMWCR
EQGCGWSEETAAVAASRGHWGILQFCLENGCPRDPDNREKETEQKTDGVA
EGCPPPDAEMSPAGPEPIRQDFTTAQSSSLEMHDPTPDELERARKCCALH
AVIHGDDAPPMEIEEASLHLHPFFSDEDY*
back to top

mRNA from alignment at Ecto-sp13_S_contig13314:2295..3281-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13314.2656.1 ID=mRNA_Ecto-sp13_S_contig13314.2656.1|Name=mRNA_Ecto-sp13_S_contig13314.2656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13314:2295..3281- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACGACCATGCTCAACCCTCTCACCAGCAACAAGACCGTCGTCAACCA
CCTGATGGAGTACGCTGATCACAATCAATACCTGTTCTTGGCGACCGTGT
GCAGGAGGTGGTCGCGCGCGTGGGGCCGGCGGCCTGCCGTCACTCGAGCC
GTTACGACCTGAACGTCGGTGTCCCAGCTATCCTACAGCTTTCACTGCGG
CCTCCGCAGGACCAAAAGAATCTGCGAGAGTGCTGGCAAGCTCGGCAGGC
TACATCTCCTCCAGTGCGCCGTGCTGAACGGTTGCCCGATCGGGAAGATG
GTATGCGCCGAGGCCGCCTTGCGCGGACACCTCGGGATCATTTGGTGGGC
GAGGGCGTACGGCTCCGAGTGGGACGAGAGCACCTGCTCGGCTGCCGCCA
GCGGGAGACACCTGAAAATCCTCCAATACTGCCGGGAGCACGGGTGCCCG
TGGGACGCCGGAACAACCGCCTCAGCCGCGCGATGTGGGAGCCTCAGCGT
GCTCAAGTGGGCCAGAGAAAACGGTTGCGACTGGGACGAAGACACATGTA
CGTCCGCAGCCTTCGGAGGACATCTCGAGATCCTGATGTGGTGTCGAGAA
CAAGGGTGCGGGTGGAGCGAAGAGACTGCCGCTGTCGCCGCCTCTCGGGG
TCACTGGGGCATTCTCCAGTTCTGTCTTGAGAACGGGTGCCCCCGGGACC
CCGACAATAGGGAGAAGGAGACGGAACAGAAAACGGATGGCGTAGCCGAA
GGATGCCCACCACCAGACGCAGAAATGAGTCCGGCCGGGCCCGAGCCAAT
CCGGCAAGACTTTACCACGGCGCAGTCGTCGTCCCTCGAGATGCACGACC
CAACCCCCGATGAGCTGGAGCGGGCCAGGAAGTGCTGCGCATTGCATGCG
GTCATCCACGGCGATGACGCGCCGCCCATGGAGATCGAGGAGGCCTCGCT
GCACCTCCATCCTTTTTTCAGCGATGAAGACTATTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13314:2295..3281-

>mRNA_Ecto-sp13_S_contig13314.2656.1 ID=mRNA_Ecto-sp13_S_contig13314.2656.1|Name=mRNA_Ecto-sp13_S_contig13314.2656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13314:2295..3281- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATGCGCCGAGGCCGCCTTGCGCGGACACCTCGGGATCATTTGGTG
GGCGAGGGCGTACGGCTCCGAGTGGGACGAGAGCACCTGCTCGGCTGCCG
CCAGCGGGAGACACCTGAAAATCCTCCAATACTGCCGGGAGCACGGGTGC
CCGTGGGACGCCGGAACAACCGCCTCAGCCGCGCGATGTGGGAGCCTCAG
CGTGCTCAAGTGGGCCAGAGAAAACGGTTGCGACTGGGACGAAGACACAT
GTACGTCCGCAGCCTTCGGAGGACATCTCGAGATCCTGATGTGGTGTCGA
GAACAAGGGTGCGGGTGGAGCGAAGAGACTGCCGCTGTCGCCGCCTCTCG
GGGTCACTGGGGCATTCTCCAGTTCTGTCTTGAGAACGGGTGCCCCCGGG
ACCCCGACAATAGGGAGAAGGAGACGGAACAGAAAACGGATGGCGTAGCC
GAAGGATGCCCACCACCAGACGCAGAAATGAGTCCGGCCGGGCCCGAGCC
AATCCGGCAAGACTTTACCACGGCGCAGTCGTCGTCCCTCGAGATGCACG
ACCCAACCCCCGATGAGCTGGAGCGGGCCAGGAAGTGCTGCGCATTGCAT
GCGGTCATCCACGGCGATGACGCGCCGCCCATGGAGATCGAGGAGGCCTC
GCTGCACCTCCATCCTTTTTTCAGCGATGAAGACTATTGA
back to top