mRNA_Ecto-sp13_S_contig10238.266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10238.266.1
Unique NamemRNA_Ecto-sp13_S_contig10238.266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10238.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10238contigEcto-sp13_S_contig10238:5521..5721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size201
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_003000.1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462518.232217-CDS-Ecto-sp13_S_contig10238:5520..57211681462518.232217-CDS-Ecto-sp13_S_contig10238:5520..5721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10238 5521..5721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10238.266.1prot_Ecto-sp13_S_contig10238.266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10238 5521..5721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10238.266.1

>prot_Ecto-sp13_S_contig10238.266.1 ID=prot_Ecto-sp13_S_contig10238.266.1|Name=mRNA_Ecto-sp13_S_contig10238.266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
TRQEVCPYSPCRQSLSIWAVDPGDARVIRRGGRGMVRRELVDIIAVSGFG
LMRGAPCCGSDRMGRRA
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mRNA from alignment at Ecto-sp13_S_contig10238:5521..5721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10238.266.1 ID=mRNA_Ecto-sp13_S_contig10238.266.1|Name=mRNA_Ecto-sp13_S_contig10238.266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10238:5521..5721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGGCAAGAGGTATGTCCTTACTCCCCGTGTAGGCAATCGCTCTCGAT
TTGGGCTGTAGATCCGGGAGACGCACGTGTCATTAGAAGAGGTGGTCGGG
GAATGGTACGACGAGAGTTGGTGGACATCATTGCTGTGAGCGGGTTCGGA
TTGATGCGGGGTGCTCCTTGCTGTGGGAGTGATAGAATGGGGCGGCGTGC
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10238:5521..5721+

>mRNA_Ecto-sp13_S_contig10238.266.1 ID=mRNA_Ecto-sp13_S_contig10238.266.1|Name=mRNA_Ecto-sp13_S_contig10238.266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10238:5521..5721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACGGCAAGAGGTATGTCCTTACTCCCCGTGTAGGCAATCGCTCTCGAT
TTGGGCTGTAGATCCGGGAGACGCACGTGTCATTAGAAGAGGTGGTCGGG
GAATGGTACGACGAGAGTTGGTGGACATCATTGCTGTGAGCGGGTTCGGA
TTGATGCGGGGTGCTCCTTGCTGTGGGAGTGATAGAATGGGGCGGCGTGC
T
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