mRNA_Ecto-sp13_S_contig13312.2653.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13312.2653.1
Unique NamemRNA_Ecto-sp13_S_contig13312.2653.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: D7G5B1_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B1_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 5.970e-47
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1
Query:    1 MYVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRTKGGTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            MYVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPR KGG DSAFRVPDFVVGTN+AYVVACA+SAFEELDPERR GS++
Sbjct:  333 MYVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRAKGGADSAFRVPDFVVGTNRAYVVACAASAFEELDPERRRGSVL 421          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A8J2B066_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2B066_9DINO)

HSP 1 Score: 87.8 bits (216), Expect = 2.690e-18
Identity = 48/103 (46.60%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFA---------------AKLPPRTKGGTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            +VV    DGAVRFYD +FRL+AWFED +AG VTSVSF                +       G TD  F  P+F+V T  A VVAC S  F EL+P++R G LV
Sbjct:  318 FVVAGSSDGAVRFYDYQFRLQAWFEDLSAGSVTSVSFDFANSTSVQMDSNNGFSSSSMEQSGSTDFQFSCPNFIVATASALVVACKSDLFFELEPQQRRGRLV 420          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A7S1U4Z5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4Z5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.340e-18
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFA--AKLPPRTKGGTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            Y+VT G+DG+VR YDL FRLE WFE+   GG+TS+SF+     P     G+     VPDFVVGT  AY++  ++  F ++  E R G+++
Sbjct:  277 YLVTGGDDGSVRIYDLLFRLEMWFEEIGGGGITSISFSNTGAGPGTVAAGSGGNLNVPDFVVGTRNAYIIGMSADMFSDVAAENRRGTML 366          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A8J2A7E2_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2A7E2_9DINO)

HSP 1 Score: 85.9 bits (211), Expect = 1.270e-17
Identity = 47/102 (46.08%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRTKGG--------------TDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            YVV    DGAVRFYD +FRL+AWFED  AG VTSVSF +       G               +D  F  P+F+V T  A VVAC S  F EL+P++R G L+
Sbjct:  310 YVVVGSSDGAVRFYDYQFRLQAWFEDLCAGSVTSVSFDSGEEQSADGNGGSGQQGSEQSAASSDFQFSCPNFIVATASALVVACRSDLFFELEPQQRRGRLI 411          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A067BRG9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRG9_SAPPC)

HSP 1 Score: 85.5 bits (210), Expect = 1.710e-17
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRTKGGTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            Y+V    DGAVRFYD  FRL AWFED  AG V SVSFA      T+     AFRVP+F+V T+ A+++    S  EE D E+R G+L+
Sbjct:   21 YLVVGAADGAVRFYDFDFRLVAWFEDLCAGPVNSVSFA-NTETTTESVPTDAFRVPEFIVATSNAFILGITPSIHEEFDVEKRRGTLL 107          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A067D054_SAPPC (C2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D054_SAPPC)

HSP 1 Score: 85.5 bits (210), Expect = 1.750e-17
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRTKGGTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            Y+V    DGAVRFYD  FRL AWFED  AG V SVSFA      T+     AFRVP+F+V T+ A+++    S  EE D E+R G+L+
Sbjct:  419 YLVVGAADGAVRFYDFDFRLVAWFEDLCAGPVNSVSFA-NTETATESVPTDAFRVPEFIVATSNAFILGITPSIHEEFDVEKRRGTLL 505          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A1V9ZR22_9STRA (C2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR22_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.260e-17
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRTKGGTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            Y+V    DGAVRFYD  FRL AWFED  AG V +VSFA    P      D AFRVP+F+V T+ A+++    S  EE D E+R G+L+
Sbjct:  481 YLVVGANDGAVRFYDFDFRLVAWFEDLCAGPVKAVSFANTETPTDATPAD-AFRVPEFIVATSNAFILGITPSIHEEYDVEKRRGTLL 567          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A8J5X7P8_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X7P8_DIALT)

HSP 1 Score: 83.2 bits (204), Expect = 1.130e-16
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFA-AKLPPRTKGGTDSA--FRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            ++VTAG DG VRF+D +FR+ AWFED  AG + S+SFA AK   R    T +A   + PDF+VGT  A ++ C+++ F+ELD   R G+L+
Sbjct:  273 FIVTAGADGHVRFFDFEFRVVAWFEDLDAGPIASLSFARAKPGARYAEQTAAAGTLKCPDFIVGTLNALIIGCSAALFDELDESARRGALL 363          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A482SNW2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNW2_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 9.940e-16
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    4 YVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAK---LPPRTKGGTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            Y+V    DGAVR+YD   RLEAWFED  AG V SVSFA +    P    G     F VPDF+VGT  A+ V   S  F+E+  E R G+L+
Sbjct:  273 YLVLGCSDGAVRYYDYFLRLEAWFEDLNAGAVDSVSFAIQSCPYPYTEAGQPGLKFWVPDFIVGTKDAFAVGVESRLFDEVKKEERRGTLL 363          
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Match: A0A813IA40_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IA40_POLGL)

HSP 1 Score: 79.3 bits (194), Expect = 2.230e-15
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    7 VVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAA-------KLPPRTKG-GTDSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV 267
            VV    DGAVRFYD +FR++AWFED +AG V S+SF         +LP  + G G +  F+ P+F+V T  A VV   S  F EL P+ R G LV
Sbjct:  181 VVIGAADGAVRFYDYQFRVQAWFEDLSAGSVKSISFEKSVDDEDYELPGASSGVGVEDDFKCPNFLVSTGSALVVLAESRLFYELSPDDRRGRLV 275          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13312.2653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B1_ECTSI5.970e-4792.13Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A8J2B066_9DINO2.690e-1846.60Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S1U4Z5_9STRA9.340e-1844.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J2A7E2_9DINO1.270e-1746.08Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A067BRG9_SAPPC1.710e-1750.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A067D054_SAPPC1.750e-1750.00C2 domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A1V9ZR22_9STRA3.260e-1750.00C2 domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A8J5X7P8_DIALT1.130e-1647.25Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A482SNW2_9ARCH9.940e-1648.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A813IA40_POLGL2.230e-1546.32Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13312contigEcto-sp13_S_contig13312:354..955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score171.0
Seed ortholog evalue2.5e-40
Seed eggNOG ortholog2880.D7G5B1
Preferred nameWDR66
Model size267
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0030030,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120036,GO:0120038
Exons2
EggNOG free text desc.cilium movement
EggNOG OGs2CCTB@1,2QQ05@2759
Cds size267
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.4532802-CDS-Ecto-sp13_S_contig13312:353..5541681462711.4532802-CDS-Ecto-sp13_S_contig13312:353..554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13312 354..554 -
1681462711.4716587-CDS-Ecto-sp13_S_contig13312:889..9551681462711.4716587-CDS-Ecto-sp13_S_contig13312:889..955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13312 890..955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13312.2653.1prot_Ecto-sp13_S_contig13312.2653.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13312 354..955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13312.2653.1

>prot_Ecto-sp13_S_contig13312.2653.1 ID=prot_Ecto-sp13_S_contig13312.2653.1|Name=mRNA_Ecto-sp13_S_contig13312.2653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MYVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRTKGGT
DSAFRVPDFVVGTNQAYVVACASSAFEELDPERRYGSLV
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mRNA from alignment at Ecto-sp13_S_contig13312:354..955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13312.2653.1 ID=mRNA_Ecto-sp13_S_contig13312.2653.1|Name=mRNA_Ecto-sp13_S_contig13312.2653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13312:354..955- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGTTGTGACAGCTGGTGAGGATGGGGCAGTGCGGTTCTATGACCT CAAGTTCCGGTTGGAGGTGAGATTGCGATGCGGGAGATAGCTACACGAGA AGGGCGTTTGATGTCGCCGGGTGATGGTGCACCATCATCGTCGTGGTGCC GAACAGCAACACCTCATAGCAGACAAAGAGTTGACAGCAGATGATCGACA TCATTGGTGTTTATTCTTCCAGCGCTACCAATCGATGCAAGCCGTGAATC CACCCACAGGACTACGACGGATACGTGTGGGAGCGCCAACACGAACAAAG GGTGAACGAGCGTGTCTGAAGGGTTGTAGTTACCACAAAACCTGCGAAAA ATCTTCCTTCCTTTCTCTCGGGATCTCGTAATTGGCTGTGTCCGGTCTCA GGCCTGGTTTGAAGATTTTACAGCCGGTGGCGTGACATCTGTCTCGTTCG CGGCAAAGCTACCTCCACGCACCAAAGGAGGTACTGATTCAGCTTTCCGA GTTCCCGATTTCGTCGTGGGCACTAATCAGGCCTACGTCGTGGCTTGCGC CTCTTCGGCATTTGAGGAGCTTGACCCAGAACGAAGGTATGGAAGTTTGG TG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13312:354..955-

>mRNA_Ecto-sp13_S_contig13312.2653.1 ID=mRNA_Ecto-sp13_S_contig13312.2653.1|Name=mRNA_Ecto-sp13_S_contig13312.2653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13312:354..955- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGTTGTGACAGCTGGTGAGGATGGGGCAGTGCGGTTCTATGACCT
CAAGTTCCGGTTGGAGGCCTGGTTTGAAGATTTTACAGCCGGTGGCGTGA
CATCTGTCTCGTTCGCGGCAAAGCTACCTCCACGCACCAAAGGAGGTACT
GATTCAGCTTTCCGAGTTCCCGATTTCGTCGTGGGCACTAATCAGGCCTA
CGTCGTGGCTTGCGCCTCTTCGGCATTTGAGGAGCTTGACCCAGAACGAA
GGTATGGAAGTTTGGTG
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