mRNA_Ecto-sp13_S_contig1331.2652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1331.2652.1
Unique NamemRNA_Ecto-sp13_S_contig1331.2652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 5.540e-138
Identity = 231/246 (93.90%), Postives = 234/246 (95.12%), Query Frame = 1
Query:  115 MSWLSSIISGPQDSRESGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQAGGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEE 852
            MSWLSSIISGPQDSR+SGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGV PPQQAGGAMGM SET GIP RQ PPLI GDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLT GGGGAGR GP ERRLASVRNTVGAVASLS+VSTPLGRARAWIRQCLVCKCLE CVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDV IDTDQS L+TPPRWPILEE
Sbjct:    1 MSWLSSIISGPQDSRDSGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPRRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTIGGGGAGRQGPRERRLASVRNTVGAVASLSHVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALNTPPRWPILEE 246          
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE)

HSP 1 Score: 416 bits (1068), Expect = 1.140e-129
Identity = 217/230 (94.35%), Postives = 218/230 (94.78%), Query Frame = 1
Query:  187 QRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQAGGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEEEEEWDRRA 876
            QRAATRA+LVKNLRNAAQALAALQAKQQQEGV PPQQAGGAMGM SET GIPPRQ PPLI GDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLT G GGAGRPGP ERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLE CVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDV IDTDQS LDTPPRWPILEEEEEWDR A
Sbjct:   53 QRAATRAKLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPPRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTMGEGGAGRPGPRERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALDTPPRWPILEEEEEWDRLA 282          
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A7S4M8N6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M8N6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.650e-7
Identity = 39/162 (24.07%), Postives = 70/162 (43.21%), Query Frame = 1
Query:  361 LIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPIL 846
            ++  D      LC AIE  L H ++   FG   +W +LE + +                   +   ++ +  +     +S+ LGR RAW+R  L  + L P + +LL E+ L   +Y P AL R  +   ++L L  +L      +  +   L++P  + +L
Sbjct:   35 VLYADNTHVTDLCYAIESLLKHGLQQGFFGTTTYWNYLENIAKC------------------MPDGQSVLQRIRQTPEISSDLGRGRAWVRVALNDQSLGPYLKSLLWEEELTNKYYHPKALMREEDDIALVLMLLESLSHLKFSLTLNDERLNSPDCFELL 178          
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A0L0DDL3_THETB (TBC1D2 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDL3_THETB)

HSP 1 Score: 57.4 bits (137), Expect = 1.720e-5
Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 1
Query:  397 CVAIEQCLFHRIRVKDFGVIP-----FWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDT 825
            C A E  + H  + +  G+       FW ++E+V +              PH         T+ ++A++S + +PLGRARAWIR  LV   LE  + ALL    L K +Y   A+ R     + LL   A L + +  +     DLD+
Sbjct:  480 CQAFEAVMRHGFKDRSGGLFSRTPREFWEYVEKVRKYH------------PH------AAPTIKSIAAMSELRSPLGRARAWIRAALVEARLEEYLVALLNHTNLTKEWYADHAVLRSHVDVLALLAQLARLSSINFALCARDVDLDS 609          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHU4_ECTSI5.540e-13893.90Rap2 interacting protein x isoform 3 n=1 Tax=Ectoc... [more]
A0A6H5KE74_9PHAE1.140e-12994.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4M8N6_9EUKA1.650e-724.07Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A0L0DDL3_THETB1.720e-529.05TBC1D2 protein n=1 Tax=Thecamonas trahens ATCC 500... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1331contigEcto-sp13_S_contig1331:12603..15642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMammalia
Stop0
Start0
Seed ortholog score62.0
Seed ortholog evalue5.5e-07
Seed eggNOG ortholog10160.XP_004646598.1
Preferred nameRUFY3
Model size910
Hectar predicted targeting categorysignal anchor
GOsGO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007399,GO:0008150,GO:0008361,GO:0009987,GO:0010720,GO:0010721,GO:0010769,GO:0010770,GO:0010771,GO:0010975,GO:0010976,GO:0010977,GO:0016043,GO:0022008,GO:0022603,GO:0022604,GO:0030027,GO:0030029,GO:0030036,GO:0030154,GO:0030175,GO:0030307,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030516,GO:0031252,GO:0031344,GO:0031345,GO:0031346,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032535,GO:0032878,GO:0032879,GO:0032880,GO:0033157,GO:0033267,GO:0036477,GO:0040008,GO:0040012,GO:0040017,GO:0042995,GO:0043005,GO:0043025,GO:0043204,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045666,GO:0045773,GO:0045927,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050769,GO:0050770,GO:0050771,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051272,GO:0051960,GO:0051961,GO:0051962,GO:0060284,GO:0060341,GO:0061387,GO:0065007,GO:0065008,GO:0070201,GO:0071437,GO:0071840,GO:0090066,GO:0090087,GO:0090316,GO:0097435,GO:0097447,GO:0097458,GO:0098858,GO:0120025,GO:0120035,GO:0120038,GO:0150034,GO:1903827,GO:1903829,GO:1904951,GO:2000026,GO:2000114,GO:2000145,GO:2000147
Exons4
EggNOG free text desc.RUN
EggNOG OGs35M3G@314146,38BTR@33154,3B966@33208,3CRQ7@33213,3J8UH@40674,4821C@7711,48Z0T@7742,4Q7XZ@9989,KOG4381@1,KOG4381@2759
Cds size909
COG Functional cat.Z
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462711.395724-CDS-Ecto-sp13_S_contig1331:12602..127911681462711.395724-CDS-Ecto-sp13_S_contig1331:12602..12791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1331 12603..12791 +
1681462711.4056191-CDS-Ecto-sp13_S_contig1331:13655..139141681462711.4056191-CDS-Ecto-sp13_S_contig1331:13655..13914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1331 13656..13914 +
1681462711.4157524-CDS-Ecto-sp13_S_contig1331:14660..149141681462711.4157524-CDS-Ecto-sp13_S_contig1331:14660..14914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1331 14661..14914 +
1681462711.4262369-CDS-Ecto-sp13_S_contig1331:15435..156421681462711.4262369-CDS-Ecto-sp13_S_contig1331:15435..15642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1331 15436..15642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1331.2652.1prot_Ecto-sp13_S_contig1331.2652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1331 12603..15642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1331.2652.1

>prot_Ecto-sp13_S_contig1331.2652.1 ID=prot_Ecto-sp13_S_contig1331.2652.1|Name=mRNA_Ecto-sp13_S_contig1331.2652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
ACTTRQLVRCPLHSVLCTLYPVFCTLWLVVVEPPAVQTMSWLSSIISGPQ
DSRESGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQA
GGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFG
VIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVS
TPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSI
ILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEEEEEWDRRAEATYSAAA
AAD
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mRNA from alignment at Ecto-sp13_S_contig1331:12603..15642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1331.2652.1 ID=mRNA_Ecto-sp13_S_contig1331.2652.1|Name=mRNA_Ecto-sp13_S_contig1331.2652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3040bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1331:12603..15642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTGCACCACGAGACAGTTGGTCCGCTGCCCTCTGCACTCTGTGCTCTG TACTCTGTACCCTGTATTCTGTACTCTGTGGCTGGTCGTGGTGGAGCCGC CAGCGGTGCAAACGATGAGCTGGCTGTCTTCCATCATCTCTGGTCCTCAG GACAGCCGCGAAAGCGGCAAGCAGGTGGAAGCTAGACAGGTAAGGACACG ATTGCTGCTGTTGTTGTGCCTGGGCTCTCTTGCTTCGTCTCACGGCCTTC TTTGACTACCGAGCCGCTGCGGTGCGCTGCGAAGTCTGCTGGCTTGCCGC TTTTCACATCCGCACTGGCAACAATGGAAAGCGTTGGCACCAAGTTGTCT CAGTTGGAGTACTTACGCATTTTCTGGCACGTTTCTTTCATGGACAATGA TGCGATAGTCATTACTGTAAGGCCGGGACATCACCGCTGTAGTTAAAGAT TTTAATATCTCCAACTGCCGTCTATCCTGTGCACTGTATTGTCGTATGCA TACCAACCAACACGTCACGGGTTCTGCGATACCTAAGCCGACCACATGCA GTCTCTCCGCCGGCTACTTGGGCAATACGCTTTCGCATGACAGAGTAAAC CTTTTTGCTGAAAGGTACTACGCACATAAACCTACGACCTAAAGAGGCGC CCTGACACAATCCCACCGCATTTGCACACTGCACCCACAACCCACAACAC CTTCGAGACACTCTGCCCACAGCAGTCTGCATTTATGCACACCTGTACTT GAATTGTTTCAAAACTCGCATCTTTGCAAATACTTTCGTCGGCACCAATG GATTGTGTCGGTCGTAGCGTCTCTCGACGACTGTACATAGGTGCAAACAC TCTATTGGACGGCATGCACAAATCAATGTCTTCCTTGTTCCTTGAATACT GGAGAATGTAACCAACTTCAACCCCGCCGACACAACTCAACGCAAACTAT ACCAACACGACACGCTCGACGCCCCGCTTCCCACCATACTCCCACCAAAC TGAGTTTTCTAAAATATCGTCTCCCCCGGCACCACCGAACATTCCTTCTT CAGCGAGCTGCCACTAGAGCGAGGCTTGTGAAGAACCTTAGAAATGCCGC ACAAGCCTTGGCGGCGCTGCAAGCCAAGCAGCAGCAGGAAGGGGTTGTGC CGCCGCAGCAGGCCGGCGGCGCCATGGGCATGGCCTCCGAAACGAGCGGG ATTCCGCCGCGTCAACATCCGCCGTTGATTAGAGGAGACACTGCCGAGGC TGTCGCGTTGTGCGTCGCCATCGAGCAGTGCCTGTTCCATCGCATCCGGG TTAAGGACTTCGGTGAGAGAGGCACTACCACCACAGTAGAGGAAGAAGAG GCCACCCCTAGTCTTTTGGTCGCGAGATGTTTGGCGTTACTGAAGTATGT ACGAGAGTTTGGTTGGATCGATGGTTAATGTTGGTGTGCGGGTCTCGGTT TTGTCGGGATCTCCCACACCTGCGACATGGAGACAAAGCCTCCGAGTGTA GCCTTTGCACGTAAGCTACTACATTGACACTGCTTGTTTTTGTGCTAGGC TGGCGGTCTTTTCGTGTTGATCTGTTTGTTGAATGGTATTCACTTCGTGG CAAGGGAGATGGGGTGGGGGGAGTAGAGGATATCTCAGGGTGGTTGATCA TCTGGCTCCCCGGAGTTGCCCCCTCGTGTCCTGCCGTTACAACACAGCGT AGCCTATCAGGTATCTTGAAACCCCCCGCTTGTTTCACTTTCATGATTCG ATGCCAGGTCGAGCTTCGGCGCGCCCCTCTCGTCTCTTACGTGATTTTTC ACGTGCGTGGTGAATTTGCGTCCACCGGGTCTCACCGCGCTCGCTACATG CTACCTCATCGCTTCCCGGGCATCGTGGGCATCGTCAACACGTTGAAAGA GAGATACCCGTTGTAGCCTCTGCCAACGTGGCTCTCTTGCCGGCAATCCC CCCACCCCCACGCACGAACCAATATCTAGATACCAGTGCCCCACCCACCC CTGTACCTTGCCCCTTTTTCCAAACCGCCGTGCCCCCCACTACCTATTCC GGTCCCAGGCGTGATACCCTTTTGGGCCTTCCTTGAGCGGGTGGAGCGGC TCCCCCTTACGACGGGGGGGGGTGGGGCCGGCCGTCCGGGTCCGCACGAG CGCCGTCTTGCGAGCGTCCGGAACACGGTCGGGGCCGTGGCCTCCCTGTC GAACGTTTCGACGCCGCTGGGGAGGGCGAGGGCGTGGATCCGCCAGTGCC TGGTGTGCAAGTGCCTGGAGCCTTGCGTGGCGGCGTTGCTGGAGGAAGAC CGGCTCGTGAAGGTGTGTAGGTCGGTTGTCGTTGGGGAGCGTTTCTTTTT CGGCTTGCCCTGCCCCGTAGAGCTACATTGCCTGCCCGATGCTTGGGGCT GCGGTGTTTATGCCGGTTTGGGAAGCAGGCTTCATTGCCGACGACACAAA GCATGCGCGTGATTGGGATCCGACTTGAACCTCTCGAAACTGCTTGCGTC CTCCAAGAAATGCCGAACCCGGGGCAATCCCCAAGCGAATTGTTTTGCTG GCACGCCTGCTGTGCGAGATAGACGGCTGTCCGTACGGTGTCCTCAACGC CCCCTCCGTCCCCCCCTCTGCAGTAGCCTTCACAAGGATGATTATGTTGG TTAAAGTAGGGGGTACGGGATTGGGTTAAGGCTGCGAACCCCCCTCTCTA AATCATTGACTAAAAATATTACCGTTGCGAGGGCGGTCCCCCCCCCGGCT AACCCCGGTCCAGCCGTGAGTTGTGAGTTTCTCTTCTCCCTGCACCCTCT TCCGTCCGCGCACCCGTTCCCTGTCAAAATAAGGTGTTCTACGAGCCGAC AGCCCTGGCACGATGCCGAGAAGGATCGATCATCCTCCTGCGCCTGTGCG CGGCCCTCGAAGCATTCGACGTCGTAATCGACACCGACCAATCGGATCTC GACACCCCGCCGCGCTGGCCAATCCTCGAAGAGGAAGAAGAGTGGGACCG ACGCGCGGAAGCAACGTATTCAGCGGCAGCCGCCGCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1331:12603..15642+

>mRNA_Ecto-sp13_S_contig1331.2652.1 ID=mRNA_Ecto-sp13_S_contig1331.2652.1|Name=mRNA_Ecto-sp13_S_contig1331.2652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1331:12603..15642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTGCACCACGAGACAGTTGGTCCGCTGCCCTCTGCACTCTGTGCTCTG
TACTCTGTACCCTGTATTCTGTACTCTGTGGCTGGTCGTGGTGGAGCCGC
CAGCGGTGCAAACGATGAGCTGGCTGTCTTCCATCATCTCTGGTCCTCAG
GACAGCCGCGAAAGCGGCAAGCAGGTGGAAGCTAGACAGCGAGCTGCCAC
TAGAGCGAGGCTTGTGAAGAACCTTAGAAATGCCGCACAAGCCTTGGCGG
CGCTGCAAGCCAAGCAGCAGCAGGAAGGGGTTGTGCCGCCGCAGCAGGCC
GGCGGCGCCATGGGCATGGCCTCCGAAACGAGCGGGATTCCGCCGCGTCA
ACATCCGCCGTTGATTAGAGGAGACACTGCCGAGGCTGTCGCGTTGTGCG
TCGCCATCGAGCAGTGCCTGTTCCATCGCATCCGGGTTAAGGACTTCGGC
GTGATACCCTTTTGGGCCTTCCTTGAGCGGGTGGAGCGGCTCCCCCTTAC
GACGGGGGGGGGTGGGGCCGGCCGTCCGGGTCCGCACGAGCGCCGTCTTG
CGAGCGTCCGGAACACGGTCGGGGCCGTGGCCTCCCTGTCGAACGTTTCG
ACGCCGCTGGGGAGGGCGAGGGCGTGGATCCGCCAGTGCCTGGTGTGCAA
GTGCCTGGAGCCTTGCGTGGCGGCGTTGCTGGAGGAAGACCGGCTCGTGA
AGGTGTTCTACGAGCCGACAGCCCTGGCACGATGCCGAGAAGGATCGATC
ATCCTCCTGCGCCTGTGCGCGGCCCTCGAAGCATTCGACGTCGTAATCGA
CACCGACCAATCGGATCTCGACACCCCGCCGCGCTGGCCAATCCTCGAAG
AGGAAGAAGAGTGGGACCGACGCGCGGAAGCAACGTATTCAGCGGCAGCC
GCCGCCGAC
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