mRNA_Ecto-sp13_S_contig13293.2640.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig13293.2640.1
Unique Name	mRNA_Ecto-sp13_S_contig13293.2640.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: TBB5_ECTVR (Tubulin beta-5 chain n=44 Tax=Eukaryota TaxID=2759 RepID=TBB5_ECTVR)

HSP 1 Score: 705 bits (1819), Expect = 1.570e-246
Identity = 351/385 (91.17%), Postives = 357/385 (92.73%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDEDEELDDQM 1155
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD+LQGFQLTHSMGGGTGAGMGTLLISKVREEYPDR+MSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQ                         ML VVNKNSSYFVEWIPNNVKASICD+PPKGLKMSTTFVGNTTAIQEVWKRVAEQFT+MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT E+EGE+DEDEELDD M
Sbjct:   87 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQ-------------------------MLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEELDDAM 446

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: A0A7S2DBE6_9STRA (Tubulin beta chain n=6 Tax=Sar TaxID=2698737 RepID=A0A7S2DBE6_9STRA)

HSP 1 Score: 678 bits (1750), Expect = 5.020e-236
Identity = 333/382 (87.17%), Postives = 349/382 (91.36%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDEDEELD 1146
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQLTHSMGGGTG+GMGTLLISK+REEYPDR+M+TYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCF LDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTC LRFPGQLNCDLRKLAVNMVPFPRLHFFM+GFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLTCA MFRGRMSTKEVDEQ                         ML V+NKNSSYFVEWIPNNVK+SICD+PPKGLKMSTTFVGN+TA+QE WKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT E+EGE+DEDE+++
Sbjct:   95 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGSGMGTLLISKIREEYPDRVMTTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCGLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCACMFRGRMSTKEVDEQ-------------------------MLNVINKNSSYFVEWIPNNVKSSICDIPPKGLKMSTTFVGNSTAVQETWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEDVE 451

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: F0Y8A1_AURAN (Uncharacterized protein n=4 Tax=Sar TaxID=2698737 RepID=F0Y8A1_AURAN)

HSP 1 Score: 651 bits (1680), Expect = 2.640e-221
Identity = 317/363 (87.33%), Postives = 333/363 (91.74%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 1089
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQLTHSMGGGTGAGMGTLLISK+REEYPDR+MSTYSVIPSPKVSDTVVEPYNATLSVHQLVEN+DQCFTLDNEALYDICFRTLKLTTPTYGDLNHL++AA+CGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFM+GFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLTC+ +FRGRMSTKEVDEQ                         ML V+NKNSSYFVEWIPNNVK++ICD+PPKGLKMSTTF+GN+TAIQE WKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ
Sbjct:   87 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENSDQCFTLDNEALYDICFRTLKLTTPTYGDLNHLIAAALCGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCSCLFRGRMSTKEVDEQ-------------------------MLNVINKNSSYFVEWIPNNVKSAICDIPPKGLKMSTTFIGNSTAIQETWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: E8Z780_9CRYP (Tubulin beta chain (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=E8Z780_9CRYP)

HSP 1 Score: 637 bits (1642), Expect = 5.230e-221
Identity = 311/380 (81.84%), Postives = 338/380 (88.95%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDEDEE 1140
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ++HS+GGGTGAGMGTLLISK+REEYPDRIM T+S++PSPKVSDTVVEPYNATLSVHQLVENAD+CF +DNEALYDICFRTLKLTTPT+GDLNHLVSA + G TCSLRFPGQLN DLRKLAVN+VPFPRLHFFM+GFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLT A MFRGRMSTKEVDEQ                         ML V NKNSSYFVEWIPNN+KAS+CD+PPKGLKM+  F+GN+TAIQE++KRV+EQFT MFRRKAFLHWYTGEGMD+MEFTEAESNMNDLVSEYQQYQDAT E+EGE+ E+EE
Sbjct:   11 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQISHSLGGGTGAGMGTLLISKIREEYPDRIMLTFSIVPSPKVSDTVVEPYNATLSVHQLVENADECFCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCSLRFPGQLNADLRKLAVNIVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTAAAMFRGRMSTKEVDEQ-------------------------MLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMAVNFIGNSTAIQEMFKRVSEQFTGMFRRKAFLHWYTGEGMDQMEFTEAESNMNDLVSEYQQYQDATAEEEGEFKEEEE 365

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: TBB_TETTH (Tubulin beta chain n=61 Tax=Alveolata TaxID=33630 RepID=TBB_TETTH)

HSP 1 Score: 639 bits (1648), Expect = 9.890e-221
Identity = 314/379 (82.85%), Postives = 338/379 (89.18%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDEDE 1137
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQ+THS+GGGTG+GMGTLLISKVREEYPDRIM T+SV+PSPKVSDTVVEPYNATLSVHQLVENAD+C  +DNEALYDICFRTLKLTTPTYGDLNHLVSAA+ G TC LRFPGQLN DLRKLAVN++PFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLT + +FRGRMSTKEVDEQ                         ML V NKNSSYFVEWIPNN+K+SICD+PPKGLKM+ TFVGN+TAIQE++KRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT E+EGE++E+E
Sbjct:   87 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQ-------------------------MLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFEEEE 440

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: L1IEU9_GUITC (Tubulin beta chain n=18 Tax=Eukaryota TaxID=2759 RepID=L1IEU9_GUITC)

HSP 1 Score: 639 bits (1647), Expect = 1.510e-220
Identity = 312/380 (82.11%), Postives = 339/380 (89.21%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDEDEE 1140
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ++HS+GGGTGAGMGTLLISK+REEYPDRIM T+S++PSPKVSDTVVEPYNATLSVHQLVENAD+CF +DNEALYDICFRTLKLTTPT+GDLNHLVSA + G TCSLRFPGQLN DLRKLAVN+VPFPRLHFFM+GFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLT A MFRGRMSTKEVDEQ                         ML V NKNSSYFVEWIPNN+KAS+CD+PPKGLKM+  F+GN+TAIQE++KRV+EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT E+EGE++E+EE
Sbjct:   87 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQISHSLGGGTGAGMGTLLISKIREEYPDRIMLTFSIVPSPKVSDTVVEPYNATLSVHQLVENADECFCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTCSLRFPGQLNSDLRKLAVNIVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTAAAMFRGRMSTKEVDEQ-------------------------MLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMAVNFIGNSTAIQEMFKRVSEQFTGMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFEEEEE 441

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: G9I115_9CHLO (Tubulin beta chain n=1 Tax=Ulva linza TaxID=63409 RepID=G9I115_9CHLO)

HSP 1 Score: 635 bits (1639), Expect = 2.260e-219
Identity = 313/380 (82.37%), Postives = 338/380 (88.95%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDEDEE 1140
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQL HSMGGGTG+GMGTLLISK+REEYPDR+M T+SV+PSPKVSDTVVEPYNATLSVHQLVE+AD+C  LDNEALYDICFRTLKLTTPT+GDLNHL+SA + G TCSLRFPGQLN DLRKLAVN+VPFPRLHFFMIGF PLTSRGSQQYRALTVPELTQQ +D+KNMMCAADPRHGRYLT A +FRGRMSTKEVDEQ                         ML V NKNSSYFVEWIPNNVKAS+CD+PPKGLKMS TFVGN+TA+QE++KRV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA+ E+EGE+DE+EE
Sbjct:   87 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLAHSMGGGTGSGMGTLLISKIREEYPDRMMVTFSVVPSPKVSDTVVEPYNATLSVHQLVESADECLILDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGVTCSLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTAAALFRGRMSTKEVDEQ-------------------------MLNVQNKNSSYFVEWIPNNVKASVCDIPPKGLKMSATFVGNSTAVQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDASAEEEGEFDEEEE 441

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: A0A7R7EX50_9STRA (Tubulin beta chain (Fragment) n=2 Tax=Oomycota TaxID=4762 RepID=A0A7R7EX50_9STRA)

HSP 1 Score: 633 bits (1633), Expect = 1.090e-218
Identity = 315/378 (83.33%), Postives = 334/378 (88.36%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDED 1134
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ+THS+GGGTG+GMGTLLISK+REEYPDRIM TYSV PSPKVSDTVVEPYNATLSVHQLVEN D+   LDNEALYDICFRTLKLTTPTYGDLNHLV AA+ G T  LRFPGQLN DLRKLAVN++PFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLT A MFRGRMSTKEVDEQ                         ML V NKNSSYFVEWIPNN+KAS+CD+PPKGLKMSTTF+GN+TAIQE++KRV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT E+EGE+DED
Sbjct:   77 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENTDEVMYLDNEALYDICFRTLKLTTPTYGDLNHLVCAAMSGITTCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQ-------------------------MLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 429

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: E9RES4_GLOSP (Tubulin beta chain (Fragment) n=2 Tax=Globisporangium TaxID=1448052 RepID=E9RES4_GLOSP)

HSP 1 Score: 633 bits (1632), Expect = 1.550e-218
Identity = 316/378 (83.60%), Postives = 334/378 (88.36%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDED 1134
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ+THS+GGGTG+GMGTLLISK+REEYPDRIM TYSV PSPKVSDTVVEPYNATLSVHQLVENAD+   LDNEALYDICFRTLKLTTPTY DLNHLV AA+ G T  LRFPGQLN DLRKLAVN++PFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLT A MFRGRMSTKEVDEQ                         ML V NKNSSYFVEWIPNN+KAS+CD+PPKGLKMSTTFVGN+TAIQE++KRV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT E+EGE+DED
Sbjct:   77 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTTPTYXDLNHLVCAAMSGITTCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQ-------------------------MLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMSTTFVGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 429

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BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Match: A0A7R7EX04_9STRA (Tubulin beta chain (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A7R7EX04_9STRA)

HSP 1 Score: 633 bits (1632), Expect = 1.550e-218
Identity = 315/378 (83.33%), Postives = 334/378 (88.36%), Query Frame = 1

Query:    1 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSLYGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDED 1134
            PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ+THS+GGGTG+GMGTLLISK+REEYPDRIM TYSV PSPKVSDTVVEPYNATLSVHQLVENAD+   LDNEALYDICFRTLKLTTPTYGDLNHLV AA+ G T  LRFPGQLN DLRKLAVN++PFPRLH FMIGFAPLTSRGSQQYRALTVPELTQQ FD+KNMMCAADPRHGRYLT A MFRGRMSTKEVDEQ                         ML V NKNSSYFVEWIPNN+KAS+CD+PPKGLKMSTTF+GN+TAIQE++KRV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT E+EGE+DED
Sbjct:   77 PDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTTPTYGDLNHLVCAAMSGITTCLRFPGQLNSDLRKLAVNLIPFPRLHLFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTAACMFRGRMSTKEVDEQ-------------------------MLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 429

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13293.2640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
TBB5_ECTVR	1.570e-246	91.17	Tubulin beta-5 chain n=44 Tax=Eukaryota TaxID=2759...	[more]
A0A7S2DBE6_9STRA	5.020e-236	87.17	Tubulin beta chain n=6 Tax=Sar TaxID=2698737 RepID...	[more]
F0Y8A1_AURAN	2.640e-221	87.33	Uncharacterized protein n=4 Tax=Sar TaxID=2698737 ...	[more]
E8Z780_9CRYP	5.230e-221	81.84	Tubulin beta chain (Fragment) n=3 Tax=Eukaryota Ta...	[more]
TBB_TETTH	9.890e-221	82.85	Tubulin beta chain n=61 Tax=Alveolata TaxID=33630 ...	[more]
L1IEU9_GUITC	1.510e-220	82.11	Tubulin beta chain n=18 Tax=Eukaryota TaxID=2759 R...	[more]
G9I115_9CHLO	2.260e-219	82.37	Tubulin beta chain n=1 Tax=Ulva linza TaxID=63409 ...	[more]
A0A7R7EX50_9STRA	1.090e-218	83.33	Tubulin beta chain (Fragment) n=2 Tax=Oomycota Tax...	[more]
E9RES4_GLOSP	1.550e-218	83.60	Tubulin beta chain (Fragment) n=2 Tax=Globisporang...	[more]
A0A7R7EX04_9STRA	1.550e-218	83.33	Tubulin beta chain (Fragment) n=2 Tax=Phytophthora...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13293	contig	Ecto-sp13_S_contig13293:950..4767 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	599.4
Seed ortholog evalue	1.1e-168
Seed eggNOG ortholog	2880.D7FNQ3
Model size	2642
KEGG ko	ko:K07375
KEGG Pathway	ko04145,ko04540,ko05130,map04145,map04540,map05130
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464
Exons	4
EggNOG free text desc.	structural constituent of cytoskeleton
EggNOG OGs	COG5023@1,KOG1375@2759
Cds size	1005
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147,ko04812

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13293.2640.1	prot_Ecto-sp13_S_contig13293.2640.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig13293 2431..4611 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462710.5348706-UTR-Ecto-sp13_S_contig13293:949..2430	1681462710.5348706-UTR-Ecto-sp13_S_contig13293:949..2430	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig13293 950..2430 -
1681462710.584923-UTR-Ecto-sp13_S_contig13293:4611..4767	1681462710.584923-UTR-Ecto-sp13_S_contig13293:4611..4767	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig13293 4612..4767 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462710.548515-CDS-Ecto-sp13_S_contig13293:2430..2584	1681462710.548515-CDS-Ecto-sp13_S_contig13293:2430..2584	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13293 2431..2584 -
1681462710.557835-CDS-Ecto-sp13_S_contig13293:3019..3297	1681462710.557835-CDS-Ecto-sp13_S_contig13293:3019..3297	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13293 3020..3297 -
1681462710.566462-CDS-Ecto-sp13_S_contig13293:3535..4060	1681462710.566462-CDS-Ecto-sp13_S_contig13293:3535..4060	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13293 3536..4060 -
1681462710.575266-CDS-Ecto-sp13_S_contig13293:4563..4611	1681462710.575266-CDS-Ecto-sp13_S_contig13293:4563..4611	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13293 4564..4611 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig13293:950..4767-
coding sequence from alignment at Ecto-sp13_S_contig13293:950..4767-

protein sequence of mRNA_Ecto-sp13_S_contig13293.2640.1

>prot_Ecto-sp13_S_contig13293.2640.1 ID=prot_Ecto-sp13_S_contig13293.2640.1|Name=mRNA_Ecto-sp13_S_contig13293.2640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=335bp
MGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLS
VHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTC
SLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPE
LTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQCALVQISSL
YGRRPSVVIASSLCVQMLTVVNKNSSYFVEWIPNNVKASICDVPPKGLKM
STTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES
NMNDLVSEYQQYQDATIEDEGEYDEDEELDDQMM*

mRNA from alignment at Ecto-sp13_S_contig13293:950..4767-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig13293.2640.1 ID=mRNA_Ecto-sp13_S_contig13293.2640.1|Name=mRNA_Ecto-sp13_S_contig13293.2640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3818bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13293:950..4767- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGACAACTTTGTGTTCGGCCAGACCGGCGCGGGGAACAACTGGGCGAA
GGGCCACTACACGGAGGGCGCGGAGCTGATCGACTCGGTGCTGGACGTCG
TGCGAAAGGAGGCGGAGTCTTGCGACTCGCTCCAGGGCTTCCAGCTGACC
CACTCGATGGGAGGCGGTACCGGAGCGGGTATGGGAACCCTACTGATCTC
CAAGGTGCGGCGGAGGGAGTATCATTCGCTGGTGTAGGTTAGAGATAGGC
TAGGCGAGCGTGTCGATCCCAAGACAGAGAGGACAAGTGTCTTTGTTGAA
CGTTTTTCTCGAATGCAAAGATCGACGACGCTCCATTCATGAGTTTTGTG
GCCGATGTCCTGCTGATGGCATGTTGTGTATAATACTGTTATGCCGTCCG
TTCTTGTTTCCCGAGATCATCGTTTGTCGGGTACTGGATTTTTCGAATAT
CGTGTCATGGCCTCGTGTTAGGTTGTGTAACATACCGAAATCGTGATCGC
ACGCTTTGTCTGTGGTGGTGCCTACACGGCGGTCGCACCTTTTGACATCA
AGAAGGGACAATAGGCGCAAAGTCAAAATATCGTCCCCGTTTTCTCTCCA
CCACGTTGCCAGCACCCTCCTCTGCCTACGCTCAATTTACCAACAATGAT
CTATAACTCAAATCTGAACCCGTAAGTCTCTCCCCGGCGTGAACATCAAA
TCAACAGGTTCGCGAGGAGTACCCGGACAGGATCATGTCCACCTACTCGG
TCATCCCCTCCCCCAAGGTTTCCGACACTGTCGTCGAGCCCTACAACGCC
ACCCTCTCCGTGCACCAGCTGGTCGAGAACGCCGACCAGTGCTTCACCCT
CGACAACGAGGCCCTCTACGACATCTGCTTCCGCACCCTCAAGCTCACCA
CGCCCACCTACGGTGACCTGAACCACCTCGTGTCGGCCGCCATCTGCGGC
ACCACGTGCTCCCTGCGATTCCCCGGGCAGCTCAACTGCGACCTGCGCAA
GCTCGCGGTGAACATGGTGCCGTTCCCCCGGCTGCACTTCTTCATGATCG
GGTTCGCGCCGCTGACCTCTCGCGGCTCCCAGCAGTACCGCGCGCTGACG
GTGCCGGAGCTGACCCAGCAGTGCTTCGACTCGAAGAACATGATGTGCGC
CGCCGACCCCCGGCACGGCCGATACCTGACTTGCGCCGTGATGTTCCGTG
GCCGCATGTCTACCAAGGAGGTGGACGAGCAGGTGAGCATGACTTCGGCA
CGCATGATTCTATATCGTTACATTGTGTGTGTTTTTTGGGGAGGCCATGT
CCCGTATTTTTACAGTGCACGGAGTGAAACGAAGCGGGCAGGATGACGGT
GTACACTGGCCACGCCGTTGCGTTGAAGGTGTGTTCGGCAGTTTCATCGA
TTTTTTTATGAAAGCATGGCGTTTCGTCCGTTGAACCATGCATGCACAAG
CAAACCCACATCGTGGCGAGTGTGCTCTTGTCCAAATCTCATCATTGTAC
GGTCGCCGGCCTTCTGTCGTTATTGCTTCGTCGTTGTGTGTTCAGATGCT
CACCGTGGTGAACAAGAACTCGTCCTACTTCGTGGAGTGGATCCCCAACA
ACGTCAAGGCCTCCATCTGCGACGTCCCCCCCAAGGGTCTCAAGATGTCC
ACCACCTTCGTGGGCAACACAACCGCCATCCAGGAGGTGTGGAAGCGCGT
GGCCGAGCAGTTCACGGCCATGTTCCGCAGAAAGGCCTTCCTCCACTGGT
GAGTTGCCGCATAGTTTGTGTTGTGTTGGTGGTTAGATGGATTGCAACGA
GCGTCCGTTTCTGTGCCCTTTAATGAGTTGGCTTGATTTGAAATTGTGTT
TCGCCCAAAGGTATTGCGACCGGGTTGGACGTTGTGTGTGCTGTGTGCGG
TTGTCATGTGGCGGTTTTTTTGGTAAGTAGCGGACATGGAAAAGGATGTT
GCTTCTTTTTGCTTTTTTTTGGCTCGCATTTAGGAAACTTGCCGCCACGT
TTTCGGTCGTGTTCACCGCCCTCGGTGTGGTGTCTCGTCACTTGTTTTTG
GCGCAGTCAGACTGGTATTCATTCTTTCGCTGTGTTCTCACGATGCTTGT
GATCAAGGCATCGATTCCTGTACTCACTACTGTTCCTTGCGTTGATGTTT
TCGTCCCTGGTGCGTGCGTGCTTCACGGATCAGGTATACCGGCGAGGGCA
TGGACGAGATGGAGTTCACGGAGGCCGAGTCGAACATGAACGACCTCGTG
TCAGAGTACCAGCAATACCAGGACGCCACAATCGAAGACGAAGGAGAGTA
CGACGAGGACGAAGAGCTCGACGACCAGATGATGTAAAACGGCGAAGCCA
TTTATATCTTCTTGGACAAGCCTTGAACGGACGGTGGCAACCACGAAGAA
AACATGAGCCCGGTTTGCTTGCAGCAGGTGACGGCCGAGGTGCTGATGTT
TCGGCTTTTCTACTTATGGGTGGAATGATGTTCGGTAGCACTTTTTGTAT
ATTTACTGAATATTGTTGAAAGTTCCAGTAGCTTTCGGAGGGGCGAAGGT
TGGTGGGACGCCGTCCGGGGCAGTCACCATAGGGGGGCAACAGAGAAGTG
GGGGGTATTTCCTAGGTTTCTATGTGTGCTGTCCTGTCCTTGCCTGGTTT
TACAATACCATATTTTCCTTGCTGTTGCCCGCGAAAGCGTATAGATTTAG
GACCGGCCCCGGGATAGTCTTTGTGCTCCCATGAGACCGGTGTGGGCGTG
AAGCGGTTGTTGTACCGGTGCTGGTTGTATTCGTGTCCGTGTTGGCCCTA
CCTGTTCGTTTTTTGAAATACTGTCTTGTTTCCCGGAGACAGTGTTGGTT
ATGTCGTGGTTGCCGCTGAGGGTCCCCCTGTGTTCGCTCTGCCTTTTCCT
CGGAAACGAACACGCAGTTACTGCCGAAGGTTTTCGATTTCGGTGGTAGT
TTCGATCAATATAAATAAATGTATGGGGGCGAGGGGCGCATGCTGAGGAT
AAGCATGCTTGGTGTTTTTGTGGGTCTTGGCGATCCTGAAACAGGTTTGC
TGGGAGTGGATTAAAGAGCTTGAGGAGATCCTTCTGTGATTGTGTGTGGG
GATAACGAGCGAAGAGGCGGTTCGTATTTGTCGACGAGACTCGTTTCCTG
CTGTGAGGAGAATCTAGAGGCGGAGACCAAGTTTGAAGCCAGTAAAAGGC
AGAGATGAGCAGCGTAAGCAGTATCCATGGTGAGATTTGCGCCGCATGTT
GCGGGTTTTCCGAGATGAACGACGCCTTCTATGTTTCTCGGAGTTGCCTG
CGACAAGAGTTGGCCGCAGTCCCGGTGGACGAGAACGCCTTCATCTGTTT
GTGTCTGGATTAGGTTGCCCATCAAGACGTCCCGCGTGATATTGACGGAT
CAATTATCCGCTAGATATGCGGTTCCTAGGAGAGTTGTCCACTTTGCTGT
GCCCCGTGAGAGAAAAGAGCCTTGTGAGTGCGCCCCTTTTTGTCGTGGAC
ATGTTCTTGTCCATCCTCCGTTTGTGTTCTGCTAGGAAAGGAAGAGAACG
TTGATTTAGTACCGAAAGACGTCGTTTCAGGCGCACAAATCTTCCGTTGA
GAGTTGAGAGCGTTAAGCATGCCGTAGTTGCCGTAATGAAGAGTATTATG
CCTCGGTGGCAAGGCTCGTAACTTGATTCCCATGGTTTGTATAGGTAGAC
CTCGTCTATTCGAGGCCCCAGTAGTCTCGAAAGCGTGAAAAGTTTGTGCT
ACGTCGTGTTTGGTCAGTAAACCAATGCGGAAAACTCTGTTCTCATCAAT
TTGTAAAGCACGTCGGTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13293:950..4767-

>mRNA_Ecto-sp13_S_contig13293.2640.1 ID=mRNA_Ecto-sp13_S_contig13293.2640.1|Name=mRNA_Ecto-sp13_S_contig13293.2640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13293:950..4767- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGCGGTACCGGAGCGGGTATGGGAACCCTACTGATCTCCAAGGT
TCGCGAGGAGTACCCGGACAGGATCATGTCCACCTACTCGGTCATCCCCT
CCCCCAAGGTTTCCGACACTGTCGTCGAGCCCTACAACGCCACCCTCTCC
GTGCACCAGCTGGTCGAGAACGCCGACCAGTGCTTCACCCTCGACAACGA
GGCCCTCTACGACATCTGCTTCCGCACCCTCAAGCTCACCACGCCCACCT
ACGGTGACCTGAACCACCTCGTGTCGGCCGCCATCTGCGGCACCACGTGC
TCCCTGCGATTCCCCGGGCAGCTCAACTGCGACCTGCGCAAGCTCGCGGT
GAACATGGTGCCGTTCCCCCGGCTGCACTTCTTCATGATCGGGTTCGCGC
CGCTGACCTCTCGCGGCTCCCAGCAGTACCGCGCGCTGACGGTGCCGGAG
CTGACCCAGCAGTGCTTCGACTCGAAGAACATGATGTGCGCCGCCGACCC
CCGGCACGGCCGATACCTGACTTGCGCCGTGATGTTCCGTGGCCGCATGT
CTACCAAGGAGGTGGACGAGCAGTGTGCTCTTGTCCAAATCTCATCATTG
TACGGTCGCCGGCCTTCTGTCGTTATTGCTTCGTCGTTGTGTGTTCAGAT
GCTCACCGTGGTGAACAAGAACTCGTCCTACTTCGTGGAGTGGATCCCCA
ACAACGTCAAGGCCTCCATCTGCGACGTCCCCCCCAAGGGTCTCAAGATG
TCCACCACCTTCGTGGGCAACACAACCGCCATCCAGGAGGTGTGGAAGCG
CGTGGCCGAGCAGTTCACGGCCATGTTCCGCAGAAAGGCCTTCCTCCACT
GGTATACCGGCGAGGGCATGGACGAGATGGAGTTCACGGAGGCCGAGTCG
AACATGAACGACCTCGTGTCAGAGTACCAGCAATACCAGGACGCCACAAT
CGAAGACGAAGGAGAGTACGACGAGGACGAAGAGCTCGACGACCAGATGA
TGTAA