mRNA_Ecto-sp13_S_contig13291.2639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A6H5L7F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F5_9PHAE) HSP 1 Score: 247 bits (630), Expect = 2.710e-81 Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
Q QAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLRE+LGALQTLCCDAATVLPVVDAGALASVLELLDTSNME+R+LATA AANVLS
Sbjct: 37 QLQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREVLGALQTLCCDAATVLPVVDAGALASVLELLDTSNMEVRMLATATAANVLS 173
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: D8LCY5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY5_ECTSI) HSP 1 Score: 249 bits (637), Expect = 3.110e-81 Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
Q QAVMGISKMIER PADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS
Sbjct: 37 QLQAVMGISKMIERHPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 173
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: D8LCY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY3_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.680e-53 Identity = 98/137 (71.53%), Postives = 110/137 (80.29%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
Q QA MGIS M++R + SSFGPLCHTLSRL ASEH+AVVAYAAR IK+LVL+DALRPQA AGIPSVLA AL+ E D CLREILGALQTLC D TVL V+ GAL SVLELL T N+EL++L+ AIAANVLS
Sbjct: 38 QAQAAMGISTMVKRVRIEPSSFGPLCHTLSRLVASEHQAVVAYAARSIKILVLDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDKETVLSVITTGALGSVLELLSTGNLELKILSMAIAANVLS 174
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A6H5JCG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG7_9PHAE) HSP 1 Score: 176 bits (447), Expect = 7.030e-52 Identity = 97/137 (70.80%), Postives = 111/137 (81.02%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
Q QA MGIS M++R + SSFGPLCHTLSRL ASEH+AVVAY+AR IK+LV++DALRPQA AGIPSVLA AL+ E D CLREILGALQTLC D TVL V+ GAL SVLELL TSN+EL++L+ AIAANVLS
Sbjct: 38 QVQAAMGISAMVKRVRIEPSSFGPLCHTLSRLVASEHQAVVAYSARSIKILVVDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDMETVLSVITTGALESVLELLSTSNLELKILSMAIAANVLS 174
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A7S2S7X2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7X2_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.040e-28 Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAG 324
Q +A + +S+++E A SFGPL H L RL +E+R V A++AR IKLL+L+DALRPQA AG+P VL ALR WE + C REILGALQTLC D A VL VV+AG
Sbjct: 39 QQKAALELSRLVETTVFPAVSFGPLAHALCRLVPNENRNVAAHSARAIKLLLLDDALRPQAVAAGMPLVLVEALRRWEGEVSCSREILGALQTLCWDKACVLRVVEAG 146
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A482SVR1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVR1_9ARCH) HSP 1 Score: 105 bits (261), Expect = 4.130e-26 Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSN 363
Q +A + +SK+++ A SFGPL H L RL S +R V +YAAR +K+L+L+DALRPQA VAG+P+V+ A+++WE++ CLRE+LGALQTL D V V+ + S+ + N
Sbjct: 30 QQKAAIELSKLVDGTVFPAVSFGPLAHALCRLVPSLNRTVSSYAARALKILILDDALRPQALVAGVPAVVCVAIKQWEEEVLCLRELLGALQTLTWDKQCVKGVLQCDIVPSLNSFIQVRN 150
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A835YQZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ0_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.300e-25 Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELL 351
Q +A + +S + E +P +SF PL H L RL RA AYAAR +KL L+DA R A +G+P+VL AALR+W ++ PCLRE+LGALQTLC + A+ VVD G + +LELL
Sbjct: 78 QHKAAVELSTLAESRPFAPASFAPLSHALCRLIPGGGRATAAYAARAVKLFALDDAFRELAASSGLPAVLVAALRQWSEEPPCLREVLGALQTLCWEQASARAVVDGGGVEPLLELL 194
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A7S3H243_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H243_9STRA) HSP 1 Score: 105 bits (263), Expect = 3.340e-25 Identity = 57/137 (41.61%), Postives = 88/137 (64.23%), Query Frame = 1
Query: 1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
Q +A + ++K++ A S+GPL H L +L S +R V +Y+AR +K+L+L+DALR AGIP+V+ A+R+WED+ CLRE+LGALQTL D V V+ +++++ ++ E+ VLA A AN+LS
Sbjct: 26 QQKAAVDLAKLVNGSVFPAYSYGPLSHALCKLIPSNNRTVASYSARALKILLLDDALRQLTVAAGIPAVVCTAVRQWEDEILCLRELLGALQTLTWDKQCVKSVLQTDVISNLILYATATDQEVSVLALATLANILS 162
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: W7TLY9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLY9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 6.360e-18 Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 61 SFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATV 303
SF P+ H L RL S R VV +AAR K L+L+DALR QA + G+P+VL AL+ W+++ PCLREILG+LQTL D TV
Sbjct: 64 SFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTV 144 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13291.2639.1 >prot_Ecto-sp13_S_contig13291.2639.1 ID=prot_Ecto-sp13_S_contig13291.2639.1|Name=mRNA_Ecto-sp13_S_contig13291.2639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp MGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDback to top mRNA from alignment at Ecto-sp13_S_contig13291:1..1317- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13291.2639.1 ID=mRNA_Ecto-sp13_S_contig13291.2639.1|Name=mRNA_Ecto-sp13_S_contig13291.2639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13291:1..1317- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13291:1..1317- >mRNA_Ecto-sp13_S_contig13291.2639.1 ID=mRNA_Ecto-sp13_S_contig13291.2639.1|Name=mRNA_Ecto-sp13_S_contig13291.2639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13291:1..1317- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |