mRNA_Ecto-sp13_S_contig13291.2639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13291.2639.1
Unique NamemRNA_Ecto-sp13_S_contig13291.2639.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A6H5L7F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F5_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 2.710e-81
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
            Q QAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLRE+LGALQTLCCDAATVLPVVDAGALASVLELLDTSNME+R+LATA AANVLS
Sbjct:   37 QLQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREVLGALQTLCCDAATVLPVVDAGALASVLELLDTSNMEVRMLATATAANVLS 173          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: D8LCY5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY5_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 3.110e-81
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
            Q QAVMGISKMIER PADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS
Sbjct:   37 QLQAVMGISKMIERHPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 173          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: D8LCY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY3_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.680e-53
Identity = 98/137 (71.53%), Postives = 110/137 (80.29%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
            Q QA MGIS M++R   + SSFGPLCHTLSRL ASEH+AVVAYAAR IK+LVL+DALRPQA  AGIPSVLA AL+  E D  CLREILGALQTLC D  TVL V+  GAL SVLELL T N+EL++L+ AIAANVLS
Sbjct:   38 QAQAAMGISTMVKRVRIEPSSFGPLCHTLSRLVASEHQAVVAYAARSIKILVLDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDKETVLSVITTGALGSVLELLSTGNLELKILSMAIAANVLS 174          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A6H5JCG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 7.030e-52
Identity = 97/137 (70.80%), Postives = 111/137 (81.02%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
            Q QA MGIS M++R   + SSFGPLCHTLSRL ASEH+AVVAY+AR IK+LV++DALRPQA  AGIPSVLA AL+  E D  CLREILGALQTLC D  TVL V+  GAL SVLELL TSN+EL++L+ AIAANVLS
Sbjct:   38 QVQAAMGISAMVKRVRIEPSSFGPLCHTLSRLVASEHQAVVAYSARSIKILVVDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDMETVLSVITTGALESVLELLSTSNLELKILSMAIAANVLS 174          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A7S2S7X2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7X2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.040e-28
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAG 324
            Q +A + +S+++E     A SFGPL H L RL  +E+R V A++AR IKLL+L+DALRPQA  AG+P VL  ALR WE +  C REILGALQTLC D A VL VV+AG
Sbjct:   39 QQKAALELSRLVETTVFPAVSFGPLAHALCRLVPNENRNVAAHSARAIKLLLLDDALRPQAVAAGMPLVLVEALRRWEGEVSCSREILGALQTLCWDKACVLRVVEAG 146          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A482SVR1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVR1_9ARCH)

HSP 1 Score: 105 bits (261), Expect = 4.130e-26
Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSN 363
            Q +A + +SK+++     A SFGPL H L RL  S +R V +YAAR +K+L+L+DALRPQA VAG+P+V+  A+++WE++  CLRE+LGALQTL  D   V  V+    + S+   +   N
Sbjct:   30 QQKAAIELSKLVDGTVFPAVSFGPLAHALCRLVPSLNRTVSSYAARALKILILDDALRPQALVAGVPAVVCVAIKQWEEEVLCLRELLGALQTLTWDKQCVKGVLQCDIVPSLNSFIQVRN 150          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A835YQZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.300e-25
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELL 351
            Q +A + +S + E +P   +SF PL H L RL     RA  AYAAR +KL  L+DA R  A  +G+P+VL AALR+W ++ PCLRE+LGALQTLC + A+   VVD G +  +LELL
Sbjct:   78 QHKAAVELSTLAESRPFAPASFAPLSHALCRLIPGGGRATAAYAARAVKLFALDDAFRELAASSGLPAVLVAALRQWSEEPPCLREVLGALQTLCWEQASARAVVDGGGVEPLLELL 194          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: A0A7S3H243_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H243_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.340e-25
Identity = 57/137 (41.61%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 QTQAVMGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLS 411
            Q +A + ++K++      A S+GPL H L +L  S +R V +Y+AR +K+L+L+DALR     AGIP+V+  A+R+WED+  CLRE+LGALQTL  D   V  V+    +++++     ++ E+ VLA A  AN+LS
Sbjct:   26 QQKAAVDLAKLVNGSVFPAYSYGPLSHALCKLIPSNNRTVASYSARALKILLLDDALRQLTVAAGIPAVVCTAVRQWEDEILCLRELLGALQTLTWDKQCVKSVLQTDVISNLILYATATDQEVSVLALATLANILS 162          
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Match: W7TLY9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLY9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.360e-18
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   61 SFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATV 303
            SF P+ H L RL  S  R VV +AAR  K L+L+DALR QA + G+P+VL  AL+ W+++ PCLREILG+LQTL  D  TV
Sbjct:   64 SFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTV 144          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13291.2639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L7F5_9PHAE2.710e-8196.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCY5_ECTSI3.110e-8198.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LCY3_ECTSI1.680e-5371.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCG7_9PHAE7.030e-5270.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2S7X2_9STRA1.040e-2857.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482SVR1_9ARCH4.130e-2645.45Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835YQZ0_9STRA1.300e-2549.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3H243_9STRA3.340e-2541.61Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TLY9_9STRA6.360e-1855.56Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13291contigEcto-sp13_S_contig13291:1..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size411
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-01_001540.1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.477529-CDS-Ecto-sp13_S_contig13291:0..801681462710.477529-CDS-Ecto-sp13_S_contig13291:0..80Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13291 1..80 -
1681462710.4887233-CDS-Ecto-sp13_S_contig13291:577..6421681462710.4887233-CDS-Ecto-sp13_S_contig13291:577..642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13291 578..642 -
1681462710.499598-CDS-Ecto-sp13_S_contig13291:1051..13021681462710.499598-CDS-Ecto-sp13_S_contig13291:1051..1302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13291 1052..1302 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462710.5089483-UTR-Ecto-sp13_S_contig13291:1302..13171681462710.5089483-UTR-Ecto-sp13_S_contig13291:1302..1317Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13291 1303..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13291.2639.1prot_Ecto-sp13_S_contig13291.2639.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13291 1..1302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13291.2639.1

>prot_Ecto-sp13_S_contig13291.2639.1 ID=prot_Ecto-sp13_S_contig13291.2639.1|Name=mRNA_Ecto-sp13_S_contig13291.2639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MGISKMIERQPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLND
ALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVV
DAGALASVLELLDTSNMELRVLATAIAANVLS
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mRNA from alignment at Ecto-sp13_S_contig13291:1..1317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13291.2639.1 ID=mRNA_Ecto-sp13_S_contig13291.2639.1|Name=mRNA_Ecto-sp13_S_contig13291.2639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13291:1..1317- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAACGCAGGCAGTGATGGGCATCTCGAAGATGATCGAGCGACAACCTGC GGACGCGTCTTCCTTTGGCCCCCTCTGCCACACCCTCTCGAGGCTCGCGG CAAGCGAGCACCGGGCGGTCGTAGCGTACGCCGCCCGGGGCATCAAGCTG CTGGTTCTGAACGACGCCCTGCGGCCGCAGGCCACGGTGGCCGGGATCCC CTCGGTGCTGGCGGCGGCGCTGAGGGAGTGGGAGGACGATGCGCCATGCC TGAGAGAGATCTTGGGGTGAGACGTAAGCAACGCGTCGTACCTGGTGGGT GTGGTTTTCGGTATGACGTTCCTGGCCTTTCAGGTCGGCAAACGGTGGGA GGAGAGGGAGGGAGGACGCTTGAGTAAGAGTTGTTGGTATTGGTGTAGGT GTTGTGGTTATCTTGTTTTTGGCGTTGTCGTTGTTGTTGCTTTGCTGTGC GCATGGGAAGTCCTTCACGCAGGCAAGAGGACATTTGGTGAGGATGCTGG GCACAGGAGGAGGGGACGCAGTGGCTGTATTGTGTCTGTGTAGTGTCCGA CGCTGTTTATCGAAGACGCTGCGAGCAGAGTGCCACCGCAACAGCAGCAC AAGCGAGCAACAAATCACCTCCTACTTATTCCCACCCTCCTCCATCACCT CGTCTCCGACCTCTCGCCTCCACAGGGCTTTGCAAACCCTCTGCTGCGAC GCGGCGACGGTGCTCCCTGTCGTCGATGCTGGCGCATTGGGTAAGCACGC TACTATTGCATGTAGCTCTGTTGCTGATATGTTGCGCCGGCCATTGTTGT CGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGTTCCTCTACTCGACG ATTTGATTAATGCCAACGCCGAACGGGACACATGCGATGATGTCCTAAAA CGCTAAATAGATCTGTTGTTCAGAGTCACGCAAGAAAAGAAGTCGACGCG AAGACCTGACGCGAATGCGCGTGTTTGCTTTTCGGTCTCGATGGTGACGC CGGTGCCTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCAACCTCTCTCTCAACCTCTCTCTCAACCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACCTCTCTC TCAACCTCTCTCTCAACCTCTCAATCTCTCTCTTTCTCTCTCTCCCTCCC TCTCTCTCGCTCCAACCTTTGGCGCTCATGATGGCAGCATCGGTCCTGGA GTTGCTAGACACGAGCAACATGGAGCTAAGAGTTCTGGCGACGGCGATAG CGGCGAACGTTCTTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13291:1..1317-

>mRNA_Ecto-sp13_S_contig13291.2639.1 ID=mRNA_Ecto-sp13_S_contig13291.2639.1|Name=mRNA_Ecto-sp13_S_contig13291.2639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13291:1..1317- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATCTCGAAGATGATCGAGCGACAACCTGCGGACGCGTCTTCCTT
TGGCCCCCTCTGCCACACCCTCTCGAGGCTCGCGGCAAGCGAGCACCGGG
CGGTCGTAGCGTACGCCGCCCGGGGCATCAAGCTGCTGGTTCTGAACGAC
GCCCTGCGGCCGCAGGCCACGGTGGCCGGGATCCCCTCGGTGCTGGCGGC
GGCGCTGAGGGAGTGGGAGGACGATGCGCCATGCCTGAGAGAGATCTTGG
GGGCTTTGCAAACCCTCTGCTGCGACGCGGCGACGGTGCTCCCTGTCGTC
GATGCTGGCGCATTGGCATCGGTCCTGGAGTTGCTAGACACGAGCAACAT
GGAGCTAAGAGTTCTGGCGACGGCGATAGCGGCGAACGTTCTTTCC
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