mRNA_Ecto-sp13_S_contig13266.2629.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13266.2629.1
Unique NamemRNA_Ecto-sp13_S_contig13266.2629.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13266.2629.1 vs. uniprot
Match: D8LMD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD7_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.370e-48
Identity = 252/400 (63.00%), Postives = 256/400 (64.00%), Query Frame = 1 
Query:    1 MEDNSNRGGGRDDGLGVYGPNAPVPEQHPRQGGGRRGTTGXXXXXXXXXXXXXXXXXXXXXDVGRRKGGADSRDRESSRXXXXXXXXXXXXXXXXXXXXXXXXXRGRGGSRDRVGDRADSRDRGGEELYRNPPPSSGGRSRNSSVNDSDXXXXXXXXXXXXXXXGADRGRSRDDGHRIWSRERDGXXXXXXXXXXVDRHEKRXXXXXXX----DDRDSRDGRSGGWDREGXXXXXXXXXXXXXXXDLAHGSSGXXDGRDER--RAAGRRGGSRSPDRGREKRRDHSREADRRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGDHDGGKECLSPPRRSSRHDGRGYPDAASGXXXXXEGDGGSRVDEPHDRASDEPGYGDHGGKGGSPESG 1182
            M DN NRGGGRDDGLGVYGPNAPVPEQH RQGGGRRG+ GXXX                  DVGR KGGADSRDRE+SR XXXXXXXXXXXXXXXXXXXXXXX RGRGGSRDR GD         EEL+RNPPP SGGRSRNSSVNDSD         XXXXXX                 ERDG          VDRHE  XXXXXXX    DDRDSRD          XXXXXXXXXXXXXX DLAHGS  XX        RAAGRR GSRSPDRGREKRRDHSREADRR          XXXXXXXXXXXXXXXXXXXXXXXXXXX                                XXXXX+ DG SRVDEPHDRASDEPGYGDHGGKGGSPESG
Sbjct:    1 MGDN-NRGGGRDDGLGVYGPNAPVPEQHQRQGGGRRGS-GXXXRRGADSRDRGGGTNGRDRDVGRMKGGADSRDRENSRRXXXXXXXXXXXXXXXXXXXXXXXRRGRGGSRDRGGDXXXXXXXXXEELHRNPPPFSGGRSRNSSVNDSDRRGSGGDGSXXXXXXXXXXXXXXXXXXXXXXXERDGGSGGGAGSSRVDRHEXXXXXXXXXXXXXDDRDSRDRGXXXXXXXXXXXXXXXXXXXXXXRDLAHGSXXXXXXXXXXXXRAAGRRDGSRSPDRGREKRRDHSREADRRQHHSQEGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXDCDGRSRVDEPHDRASDEPGYGDHGGKGGSPESG 394
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BLAST of mRNA_Ecto-sp13_S_contig13266.2629.1 vs. uniprot
Match: A0A6H5L565_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L565_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.040e-26
Identity = 191/396 (48.23%), Postives = 195/396 (49.24%), Query Frame = 1 
Query:    1 MEDNSNRGGGRDDGLGVYGPNAPVPEQHPRQGGGRRGTTGXXXXXXXXXXXXXXXXXXXXX--DVGRRKGGADSRDRESSRXXXXXXXXXXXXXXXXXXXXXXXXXRGRGGSRDRVGDRADSRDRGGEELYRNPPPSSGGRSRNSSVNDSDXXXXXXXXXXXXXXXGADRGRSRDDGHRIWSRERDGXXXXXXXXXXVDRHEKRXXXXXXXDDRDSRDGRSGGWDREGXXXXXXXXXXXXXXXDLAHGSSGXXDGRDERRAAGRRGGSRSPDRGREKRRDHSREADRRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGDHDGGKECLSPPRRSSRHDGRGYPDAASGXXXXXEGDGGSRVDEPHDRASDEPGYGDHGGKGGSPESG 1182
            MEDN+NRGGGRDDGLGVYGPNAPVPEQH RQG     + G                       D   R GGAD RD ES              XXXXXXXXX    RGRGGSRDR GDR+DSRDRG EEL RNPPPSS GRSRNSSVNDSD                      R  G   WSR    XXXXXXXXXX      R            RDG SG                                                                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 SSRHDGRGYPDAA  XXXXXEGDGG R+D PHDRASDEPGY D GGKGGSPE G
Sbjct: 1220 MEDNNNRGGGRDDGLGVYGPNAPVPEQHQRQGXXXXXSGGGHSYADDAAARGQATGGGGRRGADSRDRGGGADGRDGESX-------------XXXXXXXXXRDNRRGRGGSRDRGGDRSDSRDRGVEELPRNPPPSSRGRSRNSSVNDSDR---------------------RGSGGDGWSRXXXXXXXXXXXXXXXXXXXXR-----------ERDGGSG---------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRHDGRGYPDAAXXXXXXXEGDGGRRIDGPHDRASDEPGYVDRGGKGGSPEGG 1501
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13266.2629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMD7_ECTSI2.370e-4863.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L565_9PHAE1.040e-2648.23C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13266contigEcto-sp13_S_contig13266:3390..4751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1314
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_002390.1
Cds size1314
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.5386133-CDS-Ecto-sp13_S_contig13266:3389..35011681462709.5386133-CDS-Ecto-sp13_S_contig13266:3389..3501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13266 3390..3501 +
1681462709.5509508-CDS-Ecto-sp13_S_contig13266:3549..47511681462709.5509508-CDS-Ecto-sp13_S_contig13266:3549..4751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13266 3550..4751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13266.2629.1prot_Ecto-sp13_S_contig13266.2629.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13266 3390..4751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13266.2629.1

>prot_Ecto-sp13_S_contig13266.2629.1 ID=prot_Ecto-sp13_S_contig13266.2629.1|Name=mRNA_Ecto-sp13_S_contig13266.2629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=438bp
MEDNSNRGGGRDDGLGVYGPNAPVPEQHPRQGGGRRGTTGGGGRRGADSR
DRGGGADGGDRDVGRRKGGADSRDRESSRRGGADSRDRESSRKGGADDRD
RENRRGRGGSRDRVGDRADSRDRGGEELYRNPPPSSGGRSRNSSVNDSDR
RGRGGDGSSRRSGGGADRGRSRDDGHRIWSRERDGGGGGGGGSSRVDRHE
KRRNSSGGGDDRDSRDGRSGGWDREGDRGDSRDGRGGGGERDLAHGSSGG
GDGRDERRAAGRRGGSRSPDRGREKRRDHSREADRRHHHSPEGSRGGGGG
GGGGNKDNNYNNSPGDGRRRASSRDGDHDGGKECLSPPRRSSRHDGRGYP
DAASGGGGGGEGDGGSRVDEPHDRASDEPGYGDHGGKGGSPESGGGGGGG
GRKDKKQKKEKKEKKEKKKKRDKDKDKDKGTKSKGDGK
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mRNA from alignment at Ecto-sp13_S_contig13266:3390..4751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13266.2629.1 ID=mRNA_Ecto-sp13_S_contig13266.2629.1|Name=mRNA_Ecto-sp13_S_contig13266.2629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13266:3390..4751+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGACAACAGTAACAGGGGGGGAGGAAGAGACGATGGGCTTGGAGT
GTACGGCCCGAACGCTCCTGTGCCGGAACAGCACCCGCGGCAAGGGGGCG
GAAGAAGGGGCAGTGGCGGCGGCCACAGCCACGCCGACGACGTGGCCGCC
CGGAGTCAAGCCACCGGCGGTGGCGGCCGACGCGGGGCGGACAGCAGAGA
CAGGGGCGGCGGCGCTGATGGCGGAGACAGGGACGTTGGTAGGAGGAAAG
GCGGGGCCGACAGTAGGGACAGGGAGAGTAGCAGGAGGGGCGGGGCTGAC
AGCCGTGACAGAGAGAGTAGCAGGAAGGGCGGGGCTGACGACAGAGACAG
GGAAAACAGGAGGGGCAGGGGTGGCAGCAGAGACCGGGTTGGCGACAGGG
CGGACAGCAGGGACAGAGGCGGAGAGGAGCTGTACCGCAACCCTCCTCCT
TCTTCTGGAGGGAGAAGTCGAAACAGCAGCGTCAACGACAGCGACCGCAG
GGGCAGAGGCGGGGACGGGTCGAGCAGGCGCAGCGGCGGAGGAGCAGACA
GAGGGCGCAGCAGAGACGACGGCCATCGCATTTGGAGCCGGGAGCGCGAT
GGCGGTGGAGGCGGCGGCGGGGGTAGCAGTCGGGTTGACCGCCACGAGAA
GCGCAGAAACAGCAGCGGCGGCGGCGATGACAGGGACTCGCGCGACGGAC
GCAGCGGCGGTTGGGATAGAGAGGGGGACCGTGGAGATTCCAGAGACGGA
AGAGGAGGAGGAGGGGAGCGTGACCTTGCCCACGGCAGCAGCGGCGGCGG
CGACGGACGCGACGAACGGCGGGCGGCGGGACGGAGGGGCGGCAGTCGCA
GCCCGGACCGGGGAAGGGAGAAGCGCCGCGACCACTCGCGGGAAGCCGAT
CGCCGCCACCACCACAGCCCAGAAGGATCACGCGGGGGCGGCGGCGGGGG
CGGCGGCGGCAACAAGGACAACAACTACAACAACAGCCCCGGCGATGGCA
GGCGAAGGGCGTCCTCCCGAGACGGAGACCATGACGGGGGCAAGGAGTGC
CTCTCCCCTCCCAGGCGCAGCTCGCGCCACGATGGTCGGGGATACCCGGA
TGCCGCTAGCGGCGGCGGAGGCGGCGGCGAGGGTGATGGTGGAAGCAGGG
TAGATGAGCCTCACGACAGAGCTTCCGACGAACCGGGCTACGGAGACCAC
GGCGGGAAGGGTGGTTCGCCAGAGTCCGGCGGCGGCGGTGGCGGCGGCGG
CAGGAAAGACAAGAAGCAAAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGA
AGAAGAAGAGAGACAAGGACAAGGACAAGGACAAGGGTACCAAGAGCAAG
GGAGACGGGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13266:3390..4751+

>mRNA_Ecto-sp13_S_contig13266.2629.1 ID=mRNA_Ecto-sp13_S_contig13266.2629.1|Name=mRNA_Ecto-sp13_S_contig13266.2629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13266:3390..4751+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGACAACAGTAACAGGGGGGGAGGAAGAGACGATGGGCTTGGAGT
GTACGGCCCGAACGCTCCTGTGCCGGAACAGCACCCGCGGCAAGGGGGCG
GAAGAAGGGGCACCACCGGCGGTGGCGGCCGACGCGGGGCGGACAGCAGA
GACAGGGGCGGCGGCGCTGATGGCGGAGACAGGGACGTTGGTAGGAGGAA
AGGCGGGGCCGACAGTAGGGACAGGGAGAGTAGCAGGAGGGGCGGGGCTG
ACAGCCGTGACAGAGAGAGTAGCAGGAAGGGCGGGGCTGACGACAGAGAC
AGGGAAAACAGGAGGGGCAGGGGTGGCAGCAGAGACCGGGTTGGCGACAG
GGCGGACAGCAGGGACAGAGGCGGAGAGGAGCTGTACCGCAACCCTCCTC
CTTCTTCTGGAGGGAGAAGTCGAAACAGCAGCGTCAACGACAGCGACCGC
AGGGGCAGAGGCGGGGACGGGTCGAGCAGGCGCAGCGGCGGAGGAGCAGA
CAGAGGGCGCAGCAGAGACGACGGCCATCGCATTTGGAGCCGGGAGCGCG
ATGGCGGTGGAGGCGGCGGCGGGGGTAGCAGTCGGGTTGACCGCCACGAG
AAGCGCAGAAACAGCAGCGGCGGCGGCGATGACAGGGACTCGCGCGACGG
ACGCAGCGGCGGTTGGGATAGAGAGGGGGACCGTGGAGATTCCAGAGACG
GAAGAGGAGGAGGAGGGGAGCGTGACCTTGCCCACGGCAGCAGCGGCGGC
GGCGACGGACGCGACGAACGGCGGGCGGCGGGACGGAGGGGCGGCAGTCG
CAGCCCGGACCGGGGAAGGGAGAAGCGCCGCGACCACTCGCGGGAAGCCG
ATCGCCGCCACCACCACAGCCCAGAAGGATCACGCGGGGGCGGCGGCGGG
GGCGGCGGCGGCAACAAGGACAACAACTACAACAACAGCCCCGGCGATGG
CAGGCGAAGGGCGTCCTCCCGAGACGGAGACCATGACGGGGGCAAGGAGT
GCCTCTCCCCTCCCAGGCGCAGCTCGCGCCACGATGGTCGGGGATACCCG
GATGCCGCTAGCGGCGGCGGAGGCGGCGGCGAGGGTGATGGTGGAAGCAG
GGTAGATGAGCCTCACGACAGAGCTTCCGACGAACCGGGCTACGGAGACC
ACGGCGGGAAGGGTGGTTCGCCAGAGTCCGGCGGCGGCGGTGGCGGCGGC
GGCAGGAAAGACAAGAAGCAAAAGAAGGAGAAGAAGGAGAAGAAGGAGAA
GAAGAAGAAGAGAGACAAGGACAAGGACAAGGACAAGGGTACCAAGAGCA
AGGGAGACGGGAAG
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