mRNA_Ecto-sp13_S_contig13258.2623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13258.2623.1
Unique NamemRNA_Ecto-sp13_S_contig13258.2623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.340e-22
Identity = 61/89 (68.54%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:  154 MAAVFITT-SQQRGRHLSLGLFLTLAKNHLLRLAVVVLMTMVLLTTSAVADTPAREDAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV 417
            MA  F+ T SQ R  H S GLF +LAKNHLLRLAVVVLMTMVLLT SAVA+      A  DGVT+IHGCSDL+NDRTPVHG V IV D+
Sbjct:    1 MATAFMNTYSQSRCSHRSSGLFFSLAKNHLLRLAVVVLMTMVLLTASAVAEL-----AQVDGVTYIHGCSDLVNDRTPVHGNVCIVEDL 84
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BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: A0A6H5JI19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI19_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.240e-15
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:  306 PRPGGRAGRWCHAHPWLFGSSERQDARARLRPHCGRC 416
            PRPG RAGRWCH  PWLFGS ERQDARA LRPHCGRC
Sbjct:   53 PRPGARAGRWCHLRPWLFGSYERQDARAWLRPHCGRC 89
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BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 3.520e-6
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:  220 TLAKNHLLRLAVVVLMTMVLLTTSAVADTPARE--DAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV 417
            T+AKN LLRL VV    +V+L TSA ADTPA++  +   +G T+I+ C DL  DRT V G V IVGD+
Sbjct:   19 TVAKN-LLRLLVV----LVVLITSAAADTPAQDGGEPTAEGATYIYSCDDLAMDRTLVRGSVAIVGDI 81
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BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Match: A0A6H5L380_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L380_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.280e-5
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:  178 SQQRGRHLSLGLFLTLAKNHLLRLAVVVLMTMVLLTTSAVADTPARE--DAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV 417
            S +RG H   GL +T+AKN LLRL VV    +V+L TSA ADTP ++  +   +  T+IH C DL+ DRT V G V ++G++
Sbjct:    8 SPRRGCHPP-GL-VTVAKN-LLRLLVV----LVVLITSAAADTPGQDGGEPTAEVATYIHSCDDLVMDRTVVRGSVALMGNI 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13258.2623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G9G6_ECTSI1.340e-2268.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI19_9PHAE2.240e-1586.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ0_ECTSI3.520e-652.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L380_9PHAE1.280e-546.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13258contigEcto-sp13_S_contig13258:3689..4105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size419
Hectar predicted targeting categorysignal peptide
Exons1
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.1116-UTR-Ecto-sp13_S_contig13258:3688..38381681462709.1116-UTR-Ecto-sp13_S_contig13258:3688..3838Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13258 3689..3838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462709.120049-CDS-Ecto-sp13_S_contig13258:3838..41051681462709.120049-CDS-Ecto-sp13_S_contig13258:3838..4105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13258 3839..4105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13258.2623.1prot_Ecto-sp13_S_contig13258.2623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13258 3839..4105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13258.2623.1

>prot_Ecto-sp13_S_contig13258.2623.1 ID=prot_Ecto-sp13_S_contig13258.2623.1|Name=mRNA_Ecto-sp13_S_contig13258.2623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MMAAVFITTSQQRGRHLSLGLFLTLAKNHLLRLAVVVLMTMVLLTTSAVA
DTPAREDAPDDGVTHIHGCSDLLNDRTPVHGYVRIVGDV
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mRNA from alignment at Ecto-sp13_S_contig13258:3689..4105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13258.2623.1 ID=mRNA_Ecto-sp13_S_contig13258.2623.1|Name=mRNA_Ecto-sp13_S_contig13258.2623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13258:3689..4105+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCACGATCCACCAGTTCGTTTCCTGTTCCTCAGATGCTTTTGCTTCACC
CATGCGCACACACTCTCTCTCTCTCTCTCTCTTTCGCTCTCCGCACGGGA
AGCACGAAGATAGATCGAAGCAACAAGGATATTGATAACAACACCGCACC
ATGATGGCCGCTGTTTTCATAACCACCTCTCAACAACGCGGCCGCCACCT
CTCGTTGGGCCTCTTCCTCACGCTGGCGAAGAACCACCTTCTGCGCCTGG
CCGTGGTAGTCCTGATGACGATGGTGCTCCTTACCACCTCAGCCGTCGCT
GATACCCCCGCCCGGGAGGACGCGCCGGACGATGGTGTCACGCACATCCA
TGGTTGTTCGGATCTTCTGAACGACAGGACGCCCGTGCACGGCTACGTCC
GCATTGTGGGAGATGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13258:3689..4105+

>mRNA_Ecto-sp13_S_contig13258.2623.1 ID=mRNA_Ecto-sp13_S_contig13258.2623.1|Name=mRNA_Ecto-sp13_S_contig13258.2623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13258:3689..4105+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCCGCTGTTTTCATAACCACCTCTCAACAACGCGGCCGCCACCT
CTCGTTGGGCCTCTTCCTCACGCTGGCGAAGAACCACCTTCTGCGCCTGG
CCGTGGTAGTCCTGATGACGATGGTGCTCCTTACCACCTCAGCCGTCGCT
GATACCCCCGCCCGGGAGGACGCGCCGGACGATGGTGTCACGCACATCCA
TGGTTGTTCGGATCTTCTGAACGACAGGACGCCCGTGCACGGCTACGTCC
GCATTGTGGGAGATGTT
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