mRNA_Ecto-sp13_S_contig132.2594.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig132.2594.1
Unique NamemRNA_Ecto-sp13_S_contig132.2594.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: D8LN02_ECTSI (Dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN02_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.720e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEPPE 270
            QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEPPE
Sbjct: 1383 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEPPE 1472          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: A0A6H5L381_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L381_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 9.650e-52
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1
Query:    4 VRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEPPE 270
            VRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKE PE
Sbjct:  471 VRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKETPE 559          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: A0A7S1XT50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT50_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.740e-47
Identity = 72/90 (80.00%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEPPE 270
            Q++KMLQLKEALDQRMGCV+VGPSGCGKST+W++LR A+ KCGQ V  HV+NPKSM RQRLLGHMDLDTREW DGVLT AAR+VV+EPPE
Sbjct:   23 QIKKMLQLKEALDQRMGCVVVGPSGCGKSTVWNVLRTALEKCGQKVVVHVMNPKSMHRQRLLGHMDLDTREWTDGVLTEAARRVVREPPE 112          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: A0A485LI71_9STRA (Aste57867_21689 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI71_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.630e-43
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEP 264
            Q+RKMLQLKE+LDQRMGCV+VGPSG GKST+W +L+HAM++CGQ V THV+NPKSMPR+RLLGHMDLDTREW DGVLT AARKVVKEP
Sbjct: 1956 QIRKMLQLKESLDQRMGCVVVGPSGSGKSTVWQVLQHAMVQCGQLVKTHVMNPKSMPRERLLGHMDLDTREWHDGVLTDAARKVVKEP 2043          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: A0A0P1AJ37_PLAHL (Dynein heavy chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ37_PLAHL)

HSP 1 Score: 159 bits (401), Expect = 3.040e-43
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEP 264
            Q+RKMLQLKE+LDQRMGCV+VGPSG GKST+W +L+HA+I+CGQ V THV+NPKSMPR+RLLGHMDLDTREW DGVLTAAAR+VVKEP
Sbjct: 2049 QIRKMLQLKESLDQRMGCVVVGPSGSGKSTVWQVLQHALIQCGQLVKTHVMNPKSMPRERLLGHMDLDTREWEDGVLTAAARQVVKEP 2136          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: A0A1V9ZJN7_9STRA (Dynein heavy chain n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJN7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.050e-42
Identity = 72/88 (81.82%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEP 264
            Q+RKMLQLKE+LDQRMGCV+VGPSG GKST+W +L+ AMIKCGQ V TH++NPKSMPR+RLLGHMDLDTREW DGVLT AARKVVKEP
Sbjct: 1938 QIRKMLQLKESLDQRMGCVVVGPSGSGKSTVWQVLQAAMIKCGQLVKTHIMNPKSMPRERLLGHMDLDTREWHDGVLTDAARKVVKEP 2025          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: A0A1W0A6P2_9STRA (Dynein heavy chain n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6P2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.440e-42
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEP 264
            Q+RKMLQLKE+LDQRMGCV+VGPSG GKST+W +L+ AMI+CGQ V TH++NPKSMPR+RLLGHMDLDTREW DGVLT AARKVVKEP
Sbjct: 3224 QIRKMLQLKESLDQRMGCVVVGPSGSGKSTVWQVLQQAMIRCGQLVKTHIMNPKSMPRERLLGHMDLDTREWHDGVLTDAARKVVKEP 3311          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: A0A067CTG5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTG5_SAPPC)

HSP 1 Score: 156 bits (395), Expect = 1.950e-42
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEP 264
            Q+RKMLQLKE+LDQRMGCV+VGPSG GKST+W +L+ AMI+CGQ V TH++NPKSMPR+RLLGHMDLDTREW DGVLT AARKVVKEP
Sbjct: 1922 QIRKMLQLKESLDQRMGCVVVGPSGSGKSTVWQVLQQAMIQCGQLVKTHIMNPKSMPRERLLGHMDLDTREWHDGVLTDAARKVVKEP 2009          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: T0R6A9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R6A9_SAPDV)

HSP 1 Score: 156 bits (395), Expect = 1.960e-42
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEP 264
            Q+RKMLQLKE+LDQRMGCV+VGPSG GKST+W +L+ AMI+CGQ V TH++NPKSMPR+RLLGHMDLDTREW DGVLT AARKVVKEP
Sbjct: 1950 QIRKMLQLKESLDQRMGCVVVGPSGSGKSTVWQVLQQAMIQCGQLVKTHIMNPKSMPRERLLGHMDLDTREWHDGVLTDAARKVVKEP 2037          
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Match: D0NN79_PHYIT (Dynein heavy chain n=9 Tax=Phytophthora TaxID=4783 RepID=D0NN79_PHYIT)

HSP 1 Score: 156 bits (395), Expect = 1.960e-42
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    1 QVRKMLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPKSMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEP 264
            Q+RKMLQLKE+LDQRMGCV+VGPSG GKST+W +L+ A+IKCGQ V THV+NPKSMPR+RLLGHMDLDTREW DGVLTAAAR+VVKEP
Sbjct: 2023 QIRKMLQLKESLDQRMGCVVVGPSGSGKSTVWLVLQQALIKCGQLVKTHVMNPKSMPRERLLGHMDLDTREWEDGVLTAAARQVVKEP 2110          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig132.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN02_ECTSI1.720e-53100.00Dynein heavy chain dynein heavy chain n=1 Tax=Ecto... [more]
A0A6H5L381_9PHAE9.650e-5298.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XT50_9STRA2.740e-4780.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A485LI71_9STRA1.630e-4381.82Aste57867_21689 protein n=1 Tax=Aphanomyces stella... [more]
A0A0P1AJ37_PLAHL3.040e-4381.82Dynein heavy chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A1V9ZJN7_9STRA1.050e-4281.82Dynein heavy chain n=1 Tax=Achlya hypogyna TaxID=1... [more]
A0A1W0A6P2_9STRA1.440e-4280.68Dynein heavy chain n=1 Tax=Thraustotheca clavata T... [more]
A0A067CTG5_SAPPC1.950e-4280.68Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0R6A9_SAPDV1.960e-4280.68Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
D0NN79_PHYIT1.960e-4281.82Dynein heavy chain n=9 Tax=Phytophthora TaxID=4783... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig132contigEcto-sp13_S_contig132:24126..25083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score182.6
Seed ortholog evalue7.9e-44
Seed eggNOG ortholog2880.D8LN02
Preferred nameDYNC2H1
Model size272
KEGG koko:K05636,ko:K10414
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04962,ko05132,ko05145,ko05146,ko05165,ko05200,ko05222,map04145,map04151,map04510,map04512,map04962,map05132,map05145,map05146,map05165,map05200,map05222
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001568,GO:0001578,GO:0001944,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005858,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0005930,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008049,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008569,GO:0008589,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010256,GO:0010467,GO:0010646,GO:0010647,GO:0010648,GO:0010970,GO:0010996,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016485,GO:0016545,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017015,GO:0017111,GO:0019098,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030326,GO:0030512,GO:0030534,GO:0030705,GO:0030900,GO:0030990,GO:0031223,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035721,GO:0035735,GO:0036156,GO:0036159,GO:0040024,GO:0042073,GO:0042221,GO:0042623,GO:0042995,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0045184,GO:0045433,GO:0045503,GO:0045505,GO:0045880,GO:0046907,GO:0048065,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051959,GO:0055115,GO:0060173,GO:0060179,GO:0060271,GO:0060322,GO:0060976,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097014,GO:0097542,GO:0097730,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902494,GO:1903844,GO:1903845,GO:1905515,GO:1990939,GO:2000026
Exons2
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size258
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04516,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.7780442-UTR-Ecto-sp13_S_contig132:24125..241371681462706.7780442-UTR-Ecto-sp13_S_contig132:24125..24137Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig132 24126..24137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.7892296-CDS-Ecto-sp13_S_contig132:24137..243021681462706.7892296-CDS-Ecto-sp13_S_contig132:24137..24302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig132 24138..24302 +
1681462706.7989206-CDS-Ecto-sp13_S_contig132:24990..250831681462706.7989206-CDS-Ecto-sp13_S_contig132:24990..25083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig132 24991..25083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig132.2594.1prot_Ecto-sp13_S_contig132.2594.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig132 24138..25083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig132.2594.1

>prot_Ecto-sp13_S_contig132.2594.1 ID=prot_Ecto-sp13_S_contig132.2594.1|Name=mRNA_Ecto-sp13_S_contig132.2594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MLQLKEALDQRMGCVIVGPSGCGKSTLWSILRHAMIKCGQAVNTHVVNPK
SMPRQRLLGHMDLDTREWFDGVLTAAARKVVKEPPE
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mRNA from alignment at Ecto-sp13_S_contig132:24126..25083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig132.2594.1 ID=mRNA_Ecto-sp13_S_contig132.2594.1|Name=mRNA_Ecto-sp13_S_contig132.2594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=958bp|location=Sequence derived from alignment at Ecto-sp13_S_contig132:24126..25083+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCGCAAGATGCTGCAGCTAAAGGAGGCCTTAGACCAAAGGATGGG TTGCGTCATCGTCGGCCCTAGCGGCTGCGGGAAGTCCACCCTGTGGTCAA TCCTGCGGCACGCCATGATCAAGTGCGGGCAAGCGGTTAACACTCACGTG GTCAACCCCAAGAGCATGCCTCGCCAGGTCAGATCATCTCGTGTTACCGG GCTTGTTAGTTACTTCAGGGAAAACCCAACCCTTGGGCCACATGACATAA TTTTCTCCAATGAAACCTGGTATTATTTATTCAAGTGACTCCGCCCTGAC CTGGACACACTTTTGAATACCAAGAGGCGCAAGGTGTGAGCGAATCGATC GTGCATGCTGTCGCGGTCACAACAGAGGGTGTCCCATGGCTCAGAGCCGA TTCCCAGAAAGTTTAACGGCCAGAATGAAACCGTAACAGTTGCCCTGGAG TGGCCCAAACTGACCCTGGGGGAGGTGGCTCGTGCCTTGGTTGATGGCTT TGGTGGGTTTGGGCACACGGCGTGATGAACACGGCACAATTTGCTCGAGG CAGGAGTTGGACAGTAAGACCTGCATCGAAACCACCCCTCTGCGCGCTCG CAAGACATCGGGGGTTCGTGGTTTGCCGTACACCTTGCCCCATCAACAGA ACTCTCCCTGAAACCAGGAAGATGAGATCGGCCTGTTTTAATTGGCGCGT GTCTTCAGGCATTTTTCACGGTGCTGCTGATCTTCACTTAAATTTACCTT ATAGAAGCACCTCAGGAATACAGGGCGCAGTCGAAGTCGGTATAGTTGAG CTACGCGTGAAAGGACCACCCTCCTCCCCAATCATATCGTACGCTCATGC TTCCGCGTCTGCCAGAGGCTGCTTGGGCACATGGACTTGGATACGCGCGA GTGGTTTGACGGGGTGCTGACCGCCGCTGCCCGGAAGGTCGTCAAAGAGC CGCCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig132:24126..25083+

>mRNA_Ecto-sp13_S_contig132.2594.1 ID=mRNA_Ecto-sp13_S_contig132.2594.1|Name=mRNA_Ecto-sp13_S_contig132.2594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig132:24126..25083+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCAGCTAAAGGAGGCCTTAGACCAAAGGATGGGTTGCGTCATCGT
CGGCCCTAGCGGCTGCGGGAAGTCCACCCTGTGGTCAATCCTGCGGCACG
CCATGATCAAGTGCGGGCAAGCGGTTAACACTCACGTGGTCAACCCCAAG
AGCATGCCTCGCCAGAGGCTGCTTGGGCACATGGACTTGGATACGCGCGA
GTGGTTTGACGGGGTGCTGACCGCCGCTGCCCGGAAGGTCGTCAAAGAGC
CGCCAGAG
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