mRNA_Ecto-sp13_S_contig13194.2590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13194.2590.1
Unique NamemRNA_Ecto-sp13_S_contig13194.2590.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13194.2590.1 vs. uniprot
Match: D7G8B4_ECTSI (Pescadillo homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8B4_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.110e-46
Identity = 166/172 (96.51%), Postives = 167/172 (97.09%), Query Frame = 1 
Query:    1 GTEAAEAEAGDDVLDVVPGVATDISSSAPAAGTSSRSDDEAEEDGDGEEAFAKDLERERAGTAFSKAKALEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMSRNMMSKKAKRLYGRMQHGLSKRREEVERLKAKRKKLEAQYDAPDGMAAK 516
            GTE AE E  DDVLDVVPGVATD+SSSA AAGTSSRSDDEAEEDGDGEEAFAKDLERERAGTAFSKAKALEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMSRNMMSKKAKRLYGRMQHGLSKRREEVERLKAKRKKLEAQYDAPDGMAAK
Sbjct:  566 GTENAEGE--DDVLDVVPGVATDVSSSATAAGTSSRSDDEAEEDGDGEEAFAKDLERERAGTAFSKAKALEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMSRNMMSKKAKRLYGRMQHGLSKRREEVERLKAKRKKLEAQYDAPDGMAAK 735
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BLAST of mRNA_Ecto-sp13_S_contig13194.2590.1 vs. uniprot
Match: A0A835Z1N0_9STRA (Pescadillo homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.970e-7
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  361 EMSRNMMSKKAKRLYGRMQHGLSKRREEVERLKAKRKKLEAQYD 492
            E+S+ MMSKKAKRLYGRMQHG+ K+RE ++RLKAKRK +E+QYD
Sbjct:  683 ELSKIMMSKKAKRLYGRMQHGIGKKRETIDRLKAKRKAIESQYD 726
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13194.2590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8B4_ECTSI1.110e-4696.51Pescadillo homolog n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z1N0_9STRA2.970e-772.73Pescadillo homolog n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13194contigEcto-sp13_S_contig13194:1835..4334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score186.4
Seed ortholog evalue1.2e-44
Seed eggNOG ortholog2880.D7G8B4
Preferred nameNOP7
Model size1847
KEGG koko:K04560,ko:K14843
KEGG Pathwayko04130,ko04721,ko04911,ko05031,map04130,map04721,map04911,map05031
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0000793,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0006997,GO:0007000,GO:0007049,GO:0007154,GO:0007275,GO:0007399,GO:0007417,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009267,GO:0009405,GO:0009605,GO:0009987,GO:0009991,GO:0010001,GO:0010467,GO:0010468,GO:0010570,GO:0010876,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019915,GO:0022008,GO:0022402,GO:0022613,GO:0030154,GO:0030447,GO:0030490,GO:0030684,GO:0030686,GO:0030687,GO:0031016,GO:0031017,GO:0031323,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0035272,GO:0035690,GO:0036170,GO:0040007,GO:0040008,GO:0042063,GO:0042221,GO:0042254,GO:0042273,GO:0042274,GO:0042493,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044786,GO:0045926,GO:0046483,GO:0048513,GO:0048519,GO:0048583,GO:0048585,GO:0048709,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051235,GO:0051252,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060258,GO:0065007,GO:0065008,GO:0070013,GO:0070545,GO:0070727,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090069,GO:0090304,GO:0097159,GO:1900428,GO:1900429,GO:1900434,GO:1900435,GO:1901360,GO:1901363,GO:1901576,GO:1990904,GO:2000232
Exons2
EggNOG free text desc.Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome
EggNOG OGsCOG5163@1,KOG2481@2759
Cds size579
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.4225366-UTR-Ecto-sp13_S_contig13194:1834..31001681462706.4225366-UTR-Ecto-sp13_S_contig13194:1834..3100Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13194 1835..3100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.4356472-CDS-Ecto-sp13_S_contig13194:3100..33071681462706.4356472-CDS-Ecto-sp13_S_contig13194:3100..3307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13194 3101..3307 -
1681462706.4435728-CDS-Ecto-sp13_S_contig13194:3962..43341681462706.4435728-CDS-Ecto-sp13_S_contig13194:3962..4334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13194 3963..4334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13194.2590.1prot_Ecto-sp13_S_contig13194.2590.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13194 3101..4334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13194.2590.1

>prot_Ecto-sp13_S_contig13194.2590.1 ID=prot_Ecto-sp13_S_contig13194.2590.1|Name=mRNA_Ecto-sp13_S_contig13194.2590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
GTEAAEAEAGDDVLDVVPGVATDISSSAPAAGTSSRSDDEAEEDGDGEEA
FAKDLERERAGTAFSKAKALEEEDEEEDSSSDDDDNGDSSSGEEEEEDAM
EEVAPPSAEEKKQTEEQEHHEMSRNMMSKKAKRLYGRMQHGLSKRREEVE
RLKAKRKKLEAQYDAPDGMAAKKKKKKSKGSGKKDKERSSSS*
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mRNA from alignment at Ecto-sp13_S_contig13194:1835..4334-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13194.2590.1 ID=mRNA_Ecto-sp13_S_contig13194.2590.1|Name=mRNA_Ecto-sp13_S_contig13194.2590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2500bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13194:1835..4334- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTACCGAGGCGGCGGAGGCGGAGGCGGGGGACGATGTGCTCGACGTGGT
CCCGGGAGTCGCCACCGATATTTCATCATCGGCACCGGCAGCGGGGACGT
CCTCGAGGAGCGACGACGAGGCGGAAGAGGACGGGGACGGAGAGGAGGCG
TTTGCCAAGGACTTGGAGCGGGAGAGGGCGGGCACCGCATTCTCGAAGGC
GAAAGCGCTAGAGGAGGAGGATGAGGAGGAGGATAGCAGCAGCGACGACG
ACGATAATGGCGACAGCAGCAGCGGCGAGGAGGAGGAGGAGGACGCGATG
GAAGAAGTTGCGCCGCCTTCTGCGGAGGAGAAGAAGCAGACGGAGGAACA
GGAGCACCACGAGATGTCGAGGGTAGGCATGTTTTTTTTTCGTGTTCTCT
CTCTGTCTCTCTTGCTCCTCAGATGCACAAATCAACACGTCGTCTTCTGT
CCATCGGTATCGACCTCTCTCTGCATGCAGCCCCCCCCCCCTCCGTCGCC
CTCCCTCCCCCCCCCACCCCCGTTCTCTCAAACCAGCACCATTTTTTTCG
TGATGATTTCATGCGTAATTTTGTATGATTCCATTTGCACCCAAACATGG
AGAGCGATAGAATTTCGAAAACGTCATGAACGCAAGGTAGTATCCCCTCG
CCCAAAGAAAGCTCCCACGAACGATTGCCGATTTCGCCCTTTTTGGCGGT
ATCGCTTCCCTCCTCTTCTTTTTGGCTTCGCTCTTGGACACACGTGTCTC
CGGCCCACGAACAAATCACGGACGTCGGCGGTATTTTATGAAGCCTAGAA
ATGAAAAAAAGCCCCCGTGTGACCTTCCTCTTGTGTGACGCCGGCTGATA
ATCAGGTACACGTCGAAAGGCGTGCAAGTCGGCGCCAGAGTATATGGGAC
CAACACACAAATATATTTGCCAAGATAAAAGACAACAACAACAACCAACA
TTGGTTTTCATTCAACACACAAGGGACCAACCGCAACTTACCCCTCGCCT
TTGCGGCACGTCGCGCGTGGACTGCAGAACATGATGTCCAAGAAGGCGAA
GCGGCTGTACGGGCGCATGCAGCACGGCCTCAGCAAGCGTCGCGAGGAGG
TGGAGCGGCTCAAGGCCAAGCGCAAGAAGCTCGAGGCCCAGTACGACGCC
CCGGACGGCATGGCGGCGAAGAAGAAAAAAAAGAAGAGCAAAGGCAGCGG
TAAGAAGGACAAAGAGAGAAGTTCTTCGTCGTAGTGGTCGTATGCATAGC
CGGAAGAAAGGAGCTCAGGAGAGAAGCCGTTTCGGAGGGAGAAACGAAGG
CTGACCTGCCCGTCTTCCCGGCAACGGTCACACCGGCTATCGTGGCATTT
CTCCATCACTCTCTCTCTCTCTGGCAATTCTGGGCGTCAGTCTTGACTAA
CCTCTTGGTACGTTTTGTGGGGCGCGTCAGCCGTGGGGGGATGACGCAGA
TAGCACGCTTCTGCCACCCACAATAAACACAGAACACGGCGCCGTTGGTG
CAAACATAATTTGCAGGAGGTGTTGTTTCCCGGCATCAGCGTTCGAAAGT
CAAAGCTAAGCAAGTTCCATTCGAGGTCCGCGTTCGGGAGCCCCCGTCTT
TGTTTTTCAAGCGTCGTTCTCCCTCTGGATGTCTTCGTTTCGTCGGAGAA
GGAAGGGTTGTGCCTTTGCGTCCGCTACACACTGCGAGTGCTCTTGTTCC
CCAGCCACCCGAGGTTCTACAGCAGTGTTAAGTTTTGTGGCCCGTCTCTA
CTTTCAGAAACACCTAGGTGTGTCTCGCCACCACCCAGAAAGTCAACGTC
GTAATACTGGCAAGGCCTCTTATGTCCGCGAGTGGCTGAGAAATGGAGCG
CGTGATGTGCTCAGGTTGTGCGGGTTGAGGGATCTTAGAAAGATGCGCGA
GGTGCATGGGCCGGGGTGATACCGCACCCGCCGGTTCTGTGTGTTTGGAG
GCAGTAGGAAATCCGTCGCGAGTGGTTTGGCATAGACAGGAAGGCGTGGA
TTCTGCCAAAATCAAGGCAGTTTCGTGGAGCAAAGCGAAAATGGACGTTG
ACGGAAACAGGGGCAGCGTGTAGAAATTGGTTCGGTGTGTCTGTTCGGTG
AACAACGTGGACAAGGCAAGGAGGGGAACAACAGCAAATTGTTCACGACA
ACGATGCGGCGAAGCTTGGTGGAAAGCAAGACTTTCGATGCTGGAGGTGG
AGGTTCGTCGCCGTTCCCCTTATCGAAAAAAGGACTTGGCGAATTTCGCG
ATGCTCTTCAGAGGTAGGTATCGTACCCGGCACTGCTGCATCCCGCCTTC
GCGAAATATTAAGTTCGTGAGGATGTATTCTAGAACAGGGAAGGGGGTAC
GCAGACCCTATTCCTCATCCATCTTCCCCGGTTGCATACTTGAATCCAAC
ATGTTAACTCAACAAGAAATGTACAAGAACTTTGGGCAGGCTACTGACTT
ATGCGAAACATCGGCTCGCACAAGCTTCTTCAAATCTGGCGTGGCCAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13194:1835..4334-

>mRNA_Ecto-sp13_S_contig13194.2590.1 ID=mRNA_Ecto-sp13_S_contig13194.2590.1|Name=mRNA_Ecto-sp13_S_contig13194.2590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13194:1835..4334- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTACCGAGGCGGCGGAGGCGGAGGCGGGGGACGATGTGCTCGACGTGGT
CCCGGGAGTCGCCACCGATATTTCATCATCGGCACCGGCAGCGGGGACGT
CCTCGAGGAGCGACGACGAGGCGGAAGAGGACGGGGACGGAGAGGAGGCG
TTTGCCAAGGACTTGGAGCGGGAGAGGGCGGGCACCGCATTCTCGAAGGC
GAAAGCGCTAGAGGAGGAGGATGAGGAGGAGGATAGCAGCAGCGACGACG
ACGATAATGGCGACAGCAGCAGCGGCGAGGAGGAGGAGGAGGACGCGATG
GAAGAAGTTGCGCCGCCTTCTGCGGAGGAGAAGAAGCAGACGGAGGAACA
GGAGCACCACGAGATGTCGAGGAACATGATGTCCAAGAAGGCGAAGCGGC
TGTACGGGCGCATGCAGCACGGCCTCAGCAAGCGTCGCGAGGAGGTGGAG
CGGCTCAAGGCCAAGCGCAAGAAGCTCGAGGCCCAGTACGACGCCCCGGA
CGGCATGGCGGCGAAGAAGAAAAAAAAGAAGAGCAAAGGCAGCGGTAAGA
AGGACAAAGAGAGAAGTTCTTCGTCGTAG
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