mRNA_Ecto-sp13_S_contig13193.2589.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13193.2589.1
Unique NamemRNA_Ecto-sp13_S_contig13193.2589.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13193.2589.1 vs. uniprot
Match: D7FQL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.060e-24
Identity = 67/98 (68.37%), Postives = 69/98 (70.41%), Query Frame = -1 
Query:   73 DATSFSTGGDAHRKNDDEKVTENAWHKGDYDGQRKARHGGRHAVKDTSTRXXXXXXXXXXXXXXXXXXXXXXXXXSSATVAPEDAPVTTASAKLPTWF 366
            DATSFSTGGDAHRKN        AWHKGD DGQR+ARHGGR AVKDTSTR         XXXXXX          SSATVAPEDAPVTTASA+LPTWF
Sbjct:  361 DATSFSTGGDAHRKN--------AWHKGDDDGQRQARHGGRQAVKDTSTRSGSNSRTRRXXXXXXTDSSVGTTTGSSATVAPEDAPVTTASARLPTWF 450
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13193.2589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQL7_ECTSI2.060e-2468.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13193contigEcto-sp13_S_contig13193:1037..1404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size368
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.3926315-CDS-Ecto-sp13_S_contig13193:1036..14021681462706.3926315-CDS-Ecto-sp13_S_contig13193:1036..1402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13193 1037..1402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13193.2589.1prot_Ecto-sp13_S_contig13193.2589.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13193 1037..1402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13193.2589.1

>prot_Ecto-sp13_S_contig13193.2589.1 ID=prot_Ecto-sp13_S_contig13193.2589.1|Name=mRNA_Ecto-sp13_S_contig13193.2589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
ASTRPREPRRNRFVARAISKRWQLKPRGELGARCRYRRILGSHGCAAARR
SADAAVGASAGAPAPGAAVAAAARACVLDCVPSAMTSLALAIVVAFVPRV
FRYFFVVIFAVSVAAGGKAGGV
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mRNA from alignment at Ecto-sp13_S_contig13193:1037..1404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13193.2589.1 ID=mRNA_Ecto-sp13_S_contig13193.2589.1|Name=mRNA_Ecto-sp13_S_contig13193.2589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=368bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13193:1037..1404+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCAACACGGCCACGCGAACCTCGGAGGAATCGTTTCGTCGCCAGGGC
CATTTCAAAGAGGTGGCAACTAAAACCACGTGGGGAGCTTGGCGCTCGCT
GTCGTTACCGGCGCATCCTCGGGAGCCACGGTTGCGCTGCTGCCCGTCGT
AGTGCCGACGCTGCTGTTGGTGCTTCGGCTGGCGCTCCTGCTCCTGGTGC
GGCTGTTGCTGCCGCTGCGCGTGCTTGTGTCCTTGACTGCGTGCCGTCCG
CCATGACGAGCCTTGCGTTGGCCATCGTAGTCGCCTTTGTGCCACGCGTT
TTCCGTTACTTTTTCGTCGTCATTTTTGCGGTGAGCGTCGCCGCCGGTGG
AAAAGCTGGTGGCGTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13193:1037..1404+

>mRNA_Ecto-sp13_S_contig13193.2589.1 ID=mRNA_Ecto-sp13_S_contig13193.2589.1|Name=mRNA_Ecto-sp13_S_contig13193.2589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13193:1037..1404+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCAACACGGCCACGCGAACCTCGGAGGAATCGTTTCGTCGCCAGGGC
CATTTCAAAGAGGTGGCAACTAAAACCACGTGGGGAGCTTGGCGCTCGCT
GTCGTTACCGGCGCATCCTCGGGAGCCACGGTTGCGCTGCTGCCCGTCGT
AGTGCCGACGCTGCTGTTGGTGCTTCGGCTGGCGCTCCTGCTCCTGGTGC
GGCTGTTGCTGCCGCTGCGCGTGCTTGTGTCCTTGACTGCGTGCCGTCCG
CCATGACGAGCCTTGCGTTGGCCATCGTAGTCGCCTTTGTGCCACGCGTT
TTCCGTTACTTTTTCGTCGTCATTTTTGCGGTGAGCGTCGCCGCCGGTGG
AAAAGCTGGTGGCGTC
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