mRNA_Ecto-sp13_S_contig1319.2586.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1319.2586.1
Unique NamemRNA_Ecto-sp13_S_contig1319.2586.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: A0A6H5JJZ7_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ7_9PHAE)

HSP 1 Score: 753 bits (1945), Expect = 5.190e-259
Identity = 493/606 (81.35%), Postives = 504/606 (83.17%), Query Frame = 1
Query:  205 DGGVNANAGTGSVEGWMSRKRREFPCASSSRXXXXXXXXXXXXXXX-----------ATGAMDMEVEERDGGEER-RRGVDIASFSPYAARLGWGGSGSTNSPGDEVGRATARLAGLQFEHGDGDDGDDQEWAMESPAKKHHHDHDIYRKDGASPAPTGGVSGGIYFRMHFFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VIPVENMIVEGTPAQNMAITGAPSSCVGGLRQEGGDESMASPPSKAAATERRTLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCAGAPPSSTPLGPRTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRSGELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMFYPASG 1965
            DGGV+ANAG+GSVEGW++RKRREFPCASS  XXXXXXXXXXXXXXX            TGAMDMEVEE+ GG ER RRGVDIASFSPYAARLGWGGSG TNSPGDEVGRA ARLAGLQFEHGDGDDGDDQEWAMESPAKK                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXX       VIPVENMIVEG PAQ+MAIT AP S VGGLRQEGGDESMASPPSK AATERRTLVVYPPECLLHMGVED ENHQEKPKRL+LLCGEQGALRRT FQG LEWVDPSF+EPALITDLLRVHEYDYL              ERCAGAPPSSTPLGP TAAVDH           XXXXXXXXXXXXXXXXX     AAGDGRGGFG+RFEADVGYVDVDTRVSRESYGAA TAAGAVILAVDRVVQGKNPNAFVA+RPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRSGELSRVAIVDIDIHHGNGTEEIVRCLRPM TRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKD+FYPASG
Sbjct:   48 DGGVDANAGSGSVEGWVNRKRREFPCASSXXXXXXXXXXXXXXXXXXXXXXXXXQKQTTGAMDMEVEEKRGGGERSRRGVDIASFSPYAARLGWGGSGITNSPGDEVGRAMARLAGLQFEHGDGDDGDDQEWAMESPAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIXXXXXXXXXXXXXXXXXXXXXXVIPVENMIVEGMPAQDMAITSAPFSKVGGLRQEGGDESMASPPSKTAATERRTLVVYPPECLLHMGVEDHENHQEKPKRLDLLCGEQGALRRTTFQG-LEWVDPSFVEPALITDLLRVHEYDYL--------------ERCAGAPPSSTPLGPDTAAVDHHLRHHGRNQLPXXXXXXXXXXXXXXXXX-----AAGDGRGGFGRRFEADVGYVDVDTRVSRESYGAARTAAGAVILAVDRVVQGKNPNAFVAVRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRSGELSRVAIVDIDIHHGNGTEEIVRCLRPMNTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDLFYPASG 633          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: D8LN83_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN83_ECTSI)

HSP 1 Score: 592 bits (1526), Expect = 2.220e-195
Identity = 379/744 (50.94%), Postives = 391/744 (52.55%), Query Frame = 1
Query:  205 DGGVNANAGTGSVEGWMSRKRREFPCASSSRXXXXXXXXXXXXXXXATGAMDMEVEERDGGEERRRGVDIASFSPYAARLGWGGSGSTNSPGDEVGRATARLAGLQFEHGDGDDGDDQEWAMESPAKKHHHDHDIYRKDGASPAPTGGVSGGIYFRMHFFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVENMIVEGTPAQNMAITGAPSSCVGGLRQEGGDESMASPPSKAAATERRTLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQAS------------------------------------------------------------------------------------------------------------WSWGRTFCER-----------------------------CAGAPPSSTPL--GPRTAA------------------VDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRSGELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMFYPASG 1965
            DGGVNANAG+GSVEGWMSRKRREFPCASS  XXXXXXXXXXXXXXX               E R RGVDIASFSPYAARLGWGGSGSTNSPGDEVGRATARLAGLQFEHGDGDDGDDQEWAMESPAKKHHHDHD YRKD ASPAPTGGVSG                                                                                                                      +   GVED ENHQEKPKRLELLCGEQGALRRT FQGGLEWVDPSFI+PALITDLLRVHEYDYLVHIQ +                                                                                                            W+  R+   R                               G PP S     GP+T+                     +                                 AAGD RGGFG+RFEADVGYVDVDTRVSRESYGAA TAAGAVILAVDRVVQGKNPNAFVA+RPPGHHAGPSGS PASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRSGELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKD+FYPASG
Sbjct:   70 DGGVNANAGSGSVEGWMSRKRREFPCASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ERRSRGVDIASFSPYAARLGWGGSGSTNSPGDEVGRATARLAGLQFEHGDGDDGDDQEWAMESPAKKHHHDHDTYRKDSASPAPTGGVSG----------------------------------------------------------------------------------------------------------------------VARRGVEDHENHQEKPKRLELLCGEQGALRRTTFQGGLEWVDPSFIQPALITDLLRVHEYDYLVHIQGAVVYALGLLGNASLSALEEYRKGSAANGFPPPSPXXXXXXXXXXXRLSGGGDGDENLFASDPFQYASNAEVEAYAPEPQSMCGDPPCFTGWPINIHESRGEQNVSLRNPWTKARSRSSRGGEGAPHMLLSFGSHASISALEEYRKGSAANGFPPPSPXXSGGPQTSGDRLNGGGDGDENLFASDPFQYASNAEPPETDAWGFQEAVENGRPSIRPSKKKEEAAGDARGGFGRRFEADVGYVDVDTRVSRESYGAARTAAGAVILAVDRVVQGKNPNAFVAVRPPGHHAGPSGSAPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRSGELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDLFYPASG 693          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: A0A836CER0_9STRA (Histone deacetylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER0_9STRA)

HSP 1 Score: 279 bits (714), Expect = 9.110e-80
Identity = 168/360 (46.67%), Postives = 203/360 (56.39%), Query Frame = 1
Query:  964 AAATE--RRTLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCA---GAPPSSTPLGPRTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRSGELS-----RVAIVDIDIHHGNGTEEI----------------VRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMFYPASG 1965
            AAA E  + TL++Y P+CL H+    RE+HQE P R++ LCG  GAL   AF   L+W D +   PA ++DLLRVHEYDY+  +QA       F +R A   G       LG  T  VD                                  AAG      G  + +  GY+D DT ++ +S+  A  AAGAVI AVDRV+ G N NAFV +RPPGHHAGPSGSVP  +FW+NP MNSSGFCL+NN A+GAAYA  RYGR G+ +     RVAIVD DIH GNGTE+I                VR LRP   RLPLPPSWPP     YKPWLD+ DA+NV F S++L     FYPASG
Sbjct:  186 AAALEPVKPTLLLYVPDCLEHVAWATREHHQECPARMDALCGPAGALHGPAF-AALQWGDGAAARPATMSDLLRVHEYDYIALLQAKCEEAAKFEQRSATDAGKAADPAALG-GTRGVDRG--------------------------------AAG------GAEWGSPPGYLDADTLITAKSFAVARKAAGAVIEAVDRVMSGANKNAFVVVRPPGHHAGPSGSVPGPNFWRNPDMNSSGFCLVNNVAVGAAYAMARYGRGGQGASGGRFRVAIVDFDIHQGNGTEDIHXXXXXXXXXXXXXXIVRSLRPRRRRLPLPPSWPPAFAATYKPWLDEDDAENVMFASINLVQGHDFYPASG 505          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: A0A2D4CK96_PYTIN (Hist_deacetyl domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CK96_PYTIN)

HSP 1 Score: 220 bits (560), Expect = 2.540e-60
Identity = 138/347 (39.77%), Postives = 169/347 (48.70%), Query Frame = 1
Query:  970 ATERRTLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCAGAPPSST-----PLGPRTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRS----------GELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMFYPASG 1965
            A    TL+V+ P CL H      + HQE   RL  L G  G L +  F+  LEW D   + P  + D+LRVH + Y+ H++ S          C   PP S      PL P     D                                          F        G+ D D+ +SR SY AA  AAGAV  A+D+VV     NAFV +RPPGHHAGP+G V +  F + P M + GFCLLNN AIGAAYA   YG S            + R+AIVD DIHHGNGTEEI+R L P   R PLP SW P++ + Y+PW D+ D DNVFF S+ L D D FYP SG
Sbjct:   47 AASPNTLIVFQPTCLDHHN----DQHQENRARLTQLAGPDGVLHKPRFRS-LEWADLRALRPVRMADMLRVHSFSYIQHLEKS----------CGALPPQSDKITVGPLHPLDGDDDDDEGASLPYHEWLQSPHAQRC---------------------FEVEHPPSSGHFDSDSPISRSSYLAARLAAGAVCHAIDQVVHRSTRNAFVVVRPPGHHAGPNGCVDSQGFHRRPEMCTCGFCLLNNIAIGAAYALHTYGPSYAPSVATPERATIQRLAIVDFDIHHGNGTEEIIRNLVPHEQRYPLPASWAPLSFSSYQPWRDERDVDNVFFASIHLFDGDDFYPGSG 357          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: A0A8K1C2K1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2K1_PYTOL)

HSP 1 Score: 224 bits (570), Expect = 1.060e-59
Identity = 138/354 (38.98%), Postives = 178/354 (50.28%), Query Frame = 1
Query:  985 TLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCAGAPPSST--PLGP------RTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRY------------------GRSGELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMFYPASGK 1968
            TLVVY P CL H      + HQE  +RL +LCG QG L++  F+  L+W +   ++PA + D+LRVH + Y+ H++            C G P  +    +GP      RTA+                                                     G  D D+ +SR SY AA  AAGAV  A+D+VV+ +  NAFV +RPPGHHAGP+G V +  F + P M + GFCLLNN AIGA YA   Y                  G   E++R+AIVD DIHHGNGTEEI+R L P   + PLP SW P++   YKPW D+ D DNVFF S+ L D+D FYP SGK
Sbjct:  210 TLVVYQPTCLDHHN----DTHQENRERLSVLCGPQGILQKPRFRS-LKWANLRELKPARLNDVLRVHSFQYIRHLE----------RLCDGLPEQNDRYSVGPLYLESHRTASKKDKSKPKTTLSPLEWMKTEHAKRCYEVTNPP-------------------SSGLFDTDSPISRRSYDAARLAAGAVCHAIDKVVRRETKNAFVVVRPPGHHAGPNGCVESEGFHRRPEMCTCGFCLLNNVAIGAGYAMSTYSTPYYSKTSPSRSSSKDQGEHAEITRIAIVDFDIHHGNGTEEIIRNLVPHDQKYPLPSSWAPLSFPSYKPWRDENDIDNVFFSSIHLFDEDNFYPCSGK 529          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: A0A4D9CVT0_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVT0_9STRA)

HSP 1 Score: 225 bits (574), Expect = 4.250e-59
Identity = 164/445 (36.85%), Postives = 198/445 (44.49%), Query Frame = 1
Query:  964 AAATERRTLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWS----------------WGRTFCER---------CAGAPPSSTPLGPRTAAVD----------------------------------------------HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEA------------DVG------------------------YVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRS--GELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWL-DDGDADNVFFGSVSLQDKDMFYPASGK 1968
            +AA   RTL++YPP CL H  +    NHQE   RL +LCG QG LRR  F   LEW D + + PA  +D+LRVHEYDY+ H++A                    G T  E           A  PP   P    T  VD                                              +                                   G   GG G   +A            D G                        ++D DTRV  +S+  A  AAGAVI AVD+V  G+    FVA RPPGHHAGP G+VP+  FWK P M SSGFCLLNN AIGAAYAR  YGR+  G  +RVAIVD DIHHGNGTE+IVR L+P    LPLP SW P    ++KPWL ++ DA +VFFGS++L D   FYP SG+
Sbjct:  266 SAAMAVRTLIIYPPACLEHETL----NHQESKDRLLVLCGPQGVLRRPRF-ASLEWADGASVLPATTSDILRVHEYDYIRHLRAICQALPPVPHHSKPGYGEVGGATIEEGEGEEVASSLLASLPPEFQPEHSPTPPVDLVPAPPVRSSPAFPSSGASSPAEKDEDETXXXXXXXXXXXXHRRANNATPSTCAPILKHHTSIRDFPAEKREVVGEEREKGEGSPEGGEGLGVDAGGHPSGRRLRRADRGGEAFEKKERAGSLSGHGGQETVSQFLDSDTRVCHDSFRVACVAAGAVIQAVDQVAAGRR-RVFVATRPPGHHAGPRGAVPSHCFWKAPSMTSSGFCLLNNVAIGAAYARQAYGRAPHGPFARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQIFKPWLSEEEDAASVFFGSINLVDGSHFYPCSGR 704          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: K3WTA3_GLOUD (Hist_deacetyl domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTA3_GLOUD)

HSP 1 Score: 216 bits (551), Expect = 6.860e-57
Identity = 135/356 (37.92%), Postives = 173/356 (48.60%), Query Frame = 1
Query:  931 GDESMASPPSKAAATERRTLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCAGAPPSSTPLGPRTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRS-----------GELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMFYPASG 1965
            GD  + S P K  +    TL+VY P CL H      + HQE  +RL +LCG +G L +  F+  L+W + + ++PA + D+LRVH ++Y+ H+           ER  G  P            D                                                   G  D+D  +S+ SY AA  AAGAV  A+D+V+     NAFV +RPPGHHAGP+G V A +F + P M + GFCLLNN AIGAAYA   Y  S             + RVAIVD DIHHGNGTEE +R L P     PLPPSW P+  + YKPW D+ D +NV F S+ L D D FYP SG
Sbjct:  221 GDNVVMSLPKKVESDTVGTLLVYQPTCLDHHN----DTHQENRERLGVLCGPEGVLHKDRFKD-LQWANLNELKPARLNDMLRVHSFEYIQHL-----------ERVCGLLPEQDEAYSVGRLYDENKDLSYSDWINSEKAKKCYTVTNPP-----------------------SSGTFDMDAPISKSSYLAARLAAGAVCHAIDKVLTHDAKNAFVVVRPPGHHAGPNGCVEADTFHRRPEMCTCGFCLLNNVAIGAAYALSTYSASYYTSHNGKNASKPIERVAIVDFDIHHGNGTEECIRNLTPHKQNYPLPPSWAPLQFSSYKPWRDEKDQENVLFASIHLYDDDNFYPCSG 537          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: T0R736_SAPDV (Hist_deacetyl domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R736_SAPDV)

HSP 1 Score: 213 bits (542), Expect = 6.990e-57
Identity = 142/338 (42.01%), Postives = 167/338 (49.41%), Query Frame = 1
Query:  985 TLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCAGAPPSSTPLGPRTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRS---------GELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDM-FYPASGK 1968
            TL+VY P CL H        HQE  +R+  LCG  G L    FQ  L W     + PA + DL RVH   YL H++A+          CA  PP    L  +     H                                 AA D               +D D  +S+ES+  A  A GAV+ AVD VV G++ NAFV +RPPGHHAGP G V   +F K+PG  S GFCLLNN AIGAAYA   YG S           + RVAI+D DIHHGNGTEEIVR LR    R PLPPSW P T   Y PW DD DADNVFF S+ + D+   FYP SG+
Sbjct:  103 TLIVYQPSCLDH----HTGRHQENRQRVAALCGPHGVLNLPRFQH-LRWAPLDQLVPARLVDLERVHSRAYLRHLEAT----------CALLPPQDANLSIQNEFEGHRSHKSWIQTTKAVKCHEDTICN-----------AAVD---------------LDPDMPISKESFMTARYAVGAVLHAVDEVVCGRSRNAFVVVRPPGHHAGPYGCVENDAFHKSPGGCSCGFCLLNNVAIGAAYAMTTYGPSHYSKASISHATVRRVAIIDFDIHHGNGTEEIVRNLRLHDHRYPLPPSWAPKTFPSYMPWRDDDDADNVFFASMHVYDETTAFYPGSGR 399          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: A0A0W8DNI8_PHYNI (ATP-binding Cassette (ABC) Superfamily n=11 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DNI8_PHYNI)

HSP 1 Score: 207 bits (528), Expect = 5.850e-54
Identity = 127/347 (36.60%), Postives = 169/347 (48.70%), Query Frame = 1
Query:  985 TLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCAGAPPSSTPLGPRTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYG--------------------RSGELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMFYPASG 1965
            TL+VY P CL H      ++HQE  +RL +L G +G L +  F+  L+W + + + PA + D+LRVH  +Y+ H++ +          C   P  +      T    H                                   GD         +   G  D+D+ +S+ SY AA  AAGAV  A+D+V+  +  NAFV +RPPGHHAGP+G V    F   P M + GFCL+NN  IGA+YA   Y                     +   + RVAIVD DIHHGNGTEE++R L P     PLPPSW P+  + YKPW D+ D DNVFF S+ L D D FYP SG
Sbjct:  128 TLLVYQPTCLDHHN----DSHQESRQRLCVLGGPEGVLHKDRFKD-LKWANLNELRPARLNDILRVHTIEYIQHLERA----------CGNLPEQNKKYLVGTLYDKHKGDKELTYAEWLQTEHALKCFE------------VGD---------QPSAGSFDMDSPISKSSYMAARMAAGAVCHAIDKVLNNETKNAFVVVRPPGHHAGPNGCVEGEGFHLRPEMCTCGFCLINNVCIGASYAMSNYSSPFYTPAISSMNSDSLLSSTKRANIQRVAIVDFDIHHGNGTEEVIRNLIPHKQNYPLPPSWAPVQFSSYKPWRDENDPDNVFFSSIHLYDDDNFYPCSG 438          
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Match: A0A1W0ABG1_9STRA (Histone deacetylase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABG1_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.690e-53
Identity = 136/347 (39.19%), Postives = 168/347 (48.41%), Query Frame = 1
Query:  958 SKAAATERRTLVVYPPECLLHMGVEDRENHQEKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYLVHIQASWSWGRTFCERCAGAPPSSTPLGPRTAAVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGDGRGGFGQRFEADVGYVDVDTRVSRESYGAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKNPGMNSSGFCLLNNAAIGAAYARCRYGRS---------GELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDM-FYPASGK 1968
            S+    +  TLVV  P C+ H        HQE  +R+  +CG  G L +  F   L W +   ++ A I DL RVH  +YL+HI+            C G P  ++ L      V                                           F +     +G +D DT +S ES+ +A  A GAV+ AVD+VVQG N NAFV IRPPGHHAGP G V   +F + P   S+GFCLLNN AI AAYA   Y  S          E+ RVAIVD DIHHGNGTEEI+R L P   R PLP SW P +   Y PW D  DA NV+F S+ L D  + FYP SGK
Sbjct:   63 SRLKEEDYTTLVVCQPICMDH----HTGGHQENRRRMAEICGPNGILLKPRFNH-LRWAELDQLKSARICDLSRVHSLEYLMHIERV----------CMGLPQQNSDLNLENHFVAGQSYKEWLKTDATMKY--------------------------FAESDYPALGKLDHDTALSSESFKSALLAVGAVLHAVDKVVQGDNRNAFVVIRPPGHHAGPYGCVENDAFHEAPDTCSNGFCLLNNVAIAAAYAMSNYSTSYYSAGVSPFAEIRRVAIVDFDIHHGNGTEEIIRNLYPHYHRYPLPASWAPKSFHSYMPWRDSQDAQNVYFASLHLHDDQVPFYPGSGK 368          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1319.2586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJZ7_9PHAE5.190e-25981.35Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LN83_ECTSI2.220e-19550.94Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A836CER0_9STRA9.110e-8046.67Histone deacetylase domain-containing protein n=1 ... [more]
A0A2D4CK96_PYTIN2.540e-6039.77Hist_deacetyl domain-containing protein (Fragment)... [more]
A0A8K1C2K1_PYTOL1.060e-5938.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9CVT0_9STRA4.250e-5936.85Hist_deacetyl domain-containing protein n=1 Tax=Na... [more]
K3WTA3_GLOUD6.860e-5737.92Hist_deacetyl domain-containing protein n=1 Tax=Gl... [more]
T0R736_SAPDV6.990e-5742.01Hist_deacetyl domain-containing protein n=1 Tax=Sa... [more]
A0A0W8DNI8_PHYNI5.850e-5436.60ATP-binding Cassette (ABC) Superfamily n=11 Tax=Ph... [more]
A0A1W0ABG1_9STRA1.690e-5339.19Histone deacetylase n=1 Tax=Thraustotheca clavata ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1319contigEcto-sp13_S_contig1319:2395..10429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score595.5
Seed ortholog evalue3.2e-167
Seed eggNOG ortholog2880.D8LN83
Model size2199
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
Ec32 ortholog descriptionHistone deacetylase
Ec32 orthologEc-05_003890.1
Cds size2085
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1319.2586.1prot_Ecto-sp13_S_contig1319.2586.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1319 2395..10315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.1054668-CDS-Ecto-sp13_S_contig1319:2394..27041681462706.1054668-CDS-Ecto-sp13_S_contig1319:2394..2704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 2395..2704 +
1681462706.1149607-CDS-Ecto-sp13_S_contig1319:2737..29211681462706.1149607-CDS-Ecto-sp13_S_contig1319:2737..2921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 2738..2921 +
1681462706.1369264-CDS-Ecto-sp13_S_contig1319:3446..36091681462706.1369264-CDS-Ecto-sp13_S_contig1319:3446..3609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 3447..3609 +
1681462706.1475396-CDS-Ecto-sp13_S_contig1319:3708..37191681462706.1475396-CDS-Ecto-sp13_S_contig1319:3708..3719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 3709..3719 +
1681462706.155874-CDS-Ecto-sp13_S_contig1319:3980..43341681462706.155874-CDS-Ecto-sp13_S_contig1319:3980..4334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 3981..4334 +
1681462706.1652288-CDS-Ecto-sp13_S_contig1319:4563..46581681462706.1652288-CDS-Ecto-sp13_S_contig1319:4563..4658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 4564..4658 +
1681462706.1765602-CDS-Ecto-sp13_S_contig1319:5162..52871681462706.1765602-CDS-Ecto-sp13_S_contig1319:5162..5287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 5163..5287 +
1681462706.187107-CDS-Ecto-sp13_S_contig1319:6629..69261681462706.187107-CDS-Ecto-sp13_S_contig1319:6629..6926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 6630..6926 +
1681462706.1956382-CDS-Ecto-sp13_S_contig1319:7732..78091681462706.1956382-CDS-Ecto-sp13_S_contig1319:7732..7809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 7733..7809 +
1681462706.2041698-CDS-Ecto-sp13_S_contig1319:8964..90691681462706.2041698-CDS-Ecto-sp13_S_contig1319:8964..9069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 8965..9069 +
1681462706.212736-CDS-Ecto-sp13_S_contig1319:9355..94391681462706.212736-CDS-Ecto-sp13_S_contig1319:9355..9439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 9356..9439 +
1681462706.2340832-CDS-Ecto-sp13_S_contig1319:10035..103151681462706.2340832-CDS-Ecto-sp13_S_contig1319:10035..10315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1319 10036..10315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.2429833-UTR-Ecto-sp13_S_contig1319:10315..104291681462706.2429833-UTR-Ecto-sp13_S_contig1319:10315..10429Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1319 10316..10429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1319.2586.1

>prot_Ecto-sp13_S_contig1319.2586.1 ID=prot_Ecto-sp13_S_contig1319.2586.1|Name=mRNA_Ecto-sp13_S_contig1319.2586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=695bp
MTLSSSPSIRRSSSPTRRTSAMSRRSSSSSSPSRRRRASAAAATAAAAVD
RKNRAASHTTPSRGGGGSDGGVNANAGTGSVEGWMSRKRREFPCASSSRS
SGSGGNGGGSGQKQATGAMDMEVEERDGGEERRRGVDIASFSPYAARLGW
GGSGSTNSPGDEVGRATARLAGLQFEHGDGDDGDDQEWAMESPAKKHHHD
HDIYRKDGASPAPTGGVSGGIYFRMHFFKEEDAPPSLPPPPPPPAATTVE
RSPEITAAARAGTSAARAAAAAAAAAVIPVENMIVEGTPAQNMAITGAPS
SCVGGLRQEGGDESMASPPSKAAATERRTLVVYPPECLLHMGVEDRENHQ
EKPKRLELLCGEQGALRRTAFQGGLEWVDPSFIEPALITDLLRVHEYDYL
VHIQASWSWGRTFCERCAGAPPSSTPLGPRTAAVDHHHGHHGHNQLPPQL
QQQQQQQQQQLQPSKKEEQAAGDGRGGFGQRFEADVGYVDVDTRVSRESY
GAATTAAGAVILAVDRVVQGKNPNAFVAIRPPGHHAGPSGSVPASSFWKN
PGMNSSGFCLLNNAAIGAAYARCRYGRSGELSRVAIVDIDIHHGNGTEEI
VRCLRPMTTRLPLPPSWPPMTKTVYKPWLDDGDADNVFFGSVSLQDKDMF
YPASGKCLPVAVVAVVAAATGKLLLMRFRNKQVLSCDRNRASVF*
back to top

mRNA from alignment at Ecto-sp13_S_contig1319:2395..10429+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1319.2586.1 ID=mRNA_Ecto-sp13_S_contig1319.2586.1|Name=mRNA_Ecto-sp13_S_contig1319.2586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1319:2395..10429+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTTGTCGTCCTCTCCGTCGATCCGCCGCTCGTCTTCCCCCACTCG CCGGACGTCCGCCATGTCCCGCCGCTCGTCCTCCTCGTCGTCCCCTTCCC GCCGCCGCCGAGCGAGCGCCGCCGCCGCCACCGCTGCGGCCGCTGTCGAC CGCAAGAACCGGGCGGCGTCACACACTACGCCCAGCCGCGGTGGCGGCGG CAGCGATGGGGGCGTGAATGCCAACGCGGGCACCGGGTCCGTCGAGGGCT GGATGAGCAGAAAACGGCGGGAATTTCCCTGCGCAAGCAGCAGCCGCAGC AGCGGCAGCGGTGGCGGTAGCAGCCTTCGGGATGCCGCCGGAGGCGGCAA CGGCGGCGGCAGCGGGCAGAAGCAGGCCACGGGCGCGATGGACATGGAGG TGGAGGAAAGGGACGGGGGGGAAGAGAGGAGGAGGGGCGTCGATATCGCG TCGTTTTCTCCGTACGCGGCTCGCCTCGGCTGGGGCGGCAGCGGCAGCAC CAACAGCCCGGGGGATGAAGTGGGGCGGTGAGAATCTGGTCGTTGGGCGC GCCCCTACATATTGTGCCAGACATGCCCCAACCTTGAGGTGTCTTCGACT ACGATCTACTCTAGACGGCATGTCTCCACGCGCTTCTAATATGCCGGGGA TCTCTCCGTTGCGTTAGCCTCTTCTCTATGTGGGTGCCCTGTAGTGTGGT TTCGTCCGTGCTCGAGTTGTGTGCTTGTTTTATGAAGCATCGGCCGCGCT TGCCGGCTGACCAACGAGGATGACCACGGACGCTCACAGCCGACCAAGAA AACACGACGACGCTTGGTTTCGCTGGCTCCCCGCATGATGCACGCTCGGA TGCGCAGTGCTGCTTCCACTGATATTATGAGCGCAACATGACCGAACGTG TAATCCACGAACCCGTTTTCGTTCATCCTGGTGAATACACCCCGCCATAC ACTCCCGCACAAGCCTCCTCTGATTGCATTTCGGCGGTGATGGATCGAAT TGACTGCTGGTTGTTCGTGTACATGTTTGCTTGTGTTTTGAAATTTAAGC AGCGCTACGGCCAGGCTTGCAGGCCTGCAATTCGAGCACGGGGACGGGGA TGACGGGGACGACCAGGAATGGGCGATGGAGTCCCCCGCGAAGAAGCACC ACCACGACCACGACATCTACCGTAAAGACGGCGCATCGCCCGCCCCCACC GGAGGGGTCAGCGGTGTTGCGCGCAGGCAAGGTTTGGTTTTAATCCGCCG CCCTCGCGCGCTCCCGCTCGTTTTTGTTGCCGTGCTTCCACGGAGTGTAT GCTTTTTCTTCCAGGGTATTTACTTGTATGCCGTGCTTTTGAGCTCCTGT TCGGGTTTCGAACGGACAACCGCAAACACACACCGCGTGTTTTCGTTTTG GTACGCTGGGCGAGCTGTAGGCAGGCGGGAAGACAGATAACCTGAAGACA ATCCGCATTGCACGTGCTACATGTATAGCATGTGCACCAAAATAGGCCTA TACTCTCTACTCTGACACACTTCCACTGCTTGATGTACCTGCCTCTCCGT TGTCTCCCTTTTTGCCATTGTCTCTCGTAAACGGAGCAGGATGCACTTCT TCAAGGAAGAGGATGCGCCCCCGTCCCTGCCGCCGCCGCCTCCCCCGCCA GCGGCGACTACGGTCGAACGATCTCCCGAGATCACCGCCGCCGCGAGAGC GGGAACGTCAGCGGCAAGAGCGGCAGCAGCGGCAGCAGCAGCAGCGGTCA TACCCGTGGAAAATATGATTGTTGAGGGCACGCCCGCCCAAAACATGGCC ATCACGGGCGCTCCCTCCTCTTGCGTTGGCGGCCTGCGCCAGGAGGGAGG GGACGAATCGATGGCGTCCCCGCCCTCGAAGGCGGCGGCGACGGAGAGGC GCACTCTGGTAGTTTACCCACCGGAGTGCCTCCTGCACATGTGAGAAGTC AGCCGGTATAAACATGTGTTGTCGCTGTTCAAAGAAACCATTGGTCGCAT CCATCTCGAAACCACATCGTCCCGAGGTGTACGACCAAGGGACTCGACGA TCACAACAAAATTCACCGCGAGGGATTTACGCATGTATGCTACATTACTT GGTATGCTGTGCGGAGTTTCGTTATTTCCTGCTTCGTACTGTTGGTTTCC CTGCATGATGCGACGGTAGGGGGGTCGAGGACCGCGAGAACCACCAGGAG AAGCCCAAGCGACTCGAGCTGCTGTGCGGGGAGCAAGGCGCCCTACGCAG GACTGCCTTCCAAGGTTTCTGGCGTATTCGTAGTACAGCAGCAACAGCAC TTAAAAGACGAGATACAGCAGTACGTTAGAGCTGTATGGCGATCATGGTA GGGTTCACTCTTGGCGAAACCTCGACACGATAGACGACGACAGCATCAAC AAGCGCAAGAGCAGAAGCGGCACCCTCCTTGCTTGGCACCAGCGCAACGA CGGACAATATCCATATGATGAGCAACCGCAAACACCGAACATAATTTTAC TATTTTCGTCCCGTTTTTGGTTGGTCAGCCGGCCACAATACTTCCGAATG CAACATTGGTTTGTTGTAACGCCCGCTTTCGTGTGCCCTTCTTTTCGTGG GCACAAGAAAAAGATGGCAGGCCCTCATACCGGCCCACCCAAGCAACGAG TAGTTGGACGACACGTTGTTTGCTCTGCTTGGTCTACTCGCGTTGCTTTA CTCTGCTTCTTTTCGCTTGTTCTTCATGTTCTGCTTGCCCTGCCTTTCTT GCCTCGGGTAAACTTGAGGAGGACTGGAGTGGGTGGACCCGTCTTTCATC GAACCCGCGCTCATCACCGATCTGCTGAGGGTGCACGAGTACGACTACCT CGTGCACATACAGGCGAGTTGGTCGTGGGGTCGTACGTTCTGCGTGCGTG TTCGTTTCCTACCGCCGTTCTCCAGCATGCCGGCCGCCAGACGAACGCCG CAGACACGGCTTGGCGGTTCCCTGCAACCCTCACCTACCGCCGTGAAAAA ACAGCCCCGTTGGCGGCAGACGTCCGCGTCAGTTAGACCGGTGCGGGTGT TAGAAGGTGGTACAGAGCAAGAGACCGGGACGGTTTTTTTACATGGAGAC ACCGACGACGACAATGGAAGCGGTACCATGCTGCCCTCGGAAGAATTTTG TTCTCACCGCGTTTCCAAACTCCAACAGCATGCGATGCGAGGCAGACGTA CGTCTGCATAGGAGTCCAGCAGATTCCATCCGCGGATATCTGTACCATTT CGAAGCACAAGCTCCTTCCTTCACTCTTCGCTTCGAGGCCTTTTGCGGGT TTGTTCCCCGTTATATATTTTTCTGCATCTATTCATGGTTTGGCGTACCC TATCTTTTTTGGATCGCTTTGTTCCGCGGCCTAGAGATATGATTAATATG CAATGGTGCCGTGGTCTATGCGTTGGGGTTCCTGGGCAACGCTTCCCTTT CCGCATTCAAGGCGTACTGTAAGGGGTCGGCTGCGAACACGTTCCCGCCG CCGTCCCCGCCGCCGTTGAGCCTATCGCCGGACGTTTGGGGTTCGCACCC CTTGCAGTACGCCTCAAATGCGGAGGTAGAAGCGTTTGCCCCGGAACCCC AAAGCATGTGCGGCCACCCTCCGCACGGGAACTGAGCCAGCGCGTTTTGG TGCAGGGCTCGCCGAGACTGACGCTTGGGGCTTCCAGGAGGCAATCGAGA ACGAGCGACCCAGCATTCGGGTGCAGAGTGTTGGATACGTAGACGATACT CTGTGCAACCAACGTAAATATCACAATTGCTTCCTGTGACACTTGCTGCT TGGAACGATGCTGCTAGCATAGTCCATCTCCTGCAGTTGATCGTGATCGC TCCACATCCATTTTGTCTTCTTCATGGTGTGTGTAGTGACGCCGTCGAGA AAAGCATGTTGACAGGGGAGCAACCACAGAATCAATGATAATCACGCCGC CTAATTTACGCCTACGGTAGGTACACCCGCGTTGTTTCCCCTTCCCTGGC TTGCACTGCAGGCGGCCCTGCGCTCTCTTAACGCCAGCCACGGCTTGAAG CGCAGACGACTCTGCGCTCTCGCAGCGGCAGCAAAGACCTGAACCGCACA AGAAGCGCTCGCGGAGCGCAGCATGTCCGGCGAGCGCACGCCCCGGCAAC AGCGTTGGATTTTTCGCCCCGACCGCGTCCCCCCCCTCGCGGAGCGCTAA GTTTCTTCCCGCCGTGTTTTCGTTGGCGTTTGCAGGAGCGTTGCGCAGGA GCGCCCCCGTCCAGCACCCCGCTTGGTCCACGCACTGCCGCAGTTGACCA CCACCACGGCCATCACGGCCACAACCAGCTCCCGCCGCAGCTGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCTGCAGCCGAGCAAGAAGGAGGAACAA GCTGCGGGTGACGGCAGAGGCGGCTTCGGGCAAAGATTCGAGGCCGACGT CGGGTATGTGGACGTGGACACGAGGGTCTCGAGGGAGTCGTACGGGGCGG CGACGACGGCTGCCGGGGCGGTCATCCTGGCGGTGAGATGATGCACCACT GGCCCCCCTTTCGCCGACGCAACTAGGGCTACTGGCGAGCTCTTTCTTTT CTCTCTTGTTTATTTGTTTCGTTCCAATTGATGACCGTTGTTTCCCGTTA CAGAGCAGAGCACAGATTGACGTGTACAACAACAGGGAATAGCTGAGCTC TTTTGTGTGGCTTGTTTTGTTTTCGCGCCGTAGTATGTCCTGCCCGGTAA CCGCATGGAGAAACGTGTTTGGAGGAACCGCTCGTGATTCTAGGTTGGTG CTTTCTCGTGCAGCGCCGTAACGCACCCTTTCATACCACTATCGATAGCG CCACATCGTGTTATCTGCATGCTGCCTGAGACTTGGGATTCTTGGGGTAC CCATATCCACCCAAGGGTGCTACCCGTATCCACCGAATTGTTCTCATTGG TTGACCGGAACCGTTCCACATTTTGCATCGTATGAATTTTTCGACTGCTC AACTGCAGAGTCTTCCTTCACTACACCGTACCGCACCCCGCTGACACACC ATTCCGTGCCATCACGCCATTCCATAGCACCATTGGTGTACCGTGTGCCG TGTTCCGTGCCACCATGCCACCAGGTGGACCGATTCTGGGCGACCGCACC GCACCACGCTAACACACCATTCCGTGCCACCACGCCATTCCATTGCACCA CACTACATGTACCGTATTCCGTGCCACCGTGCCACCAGGTGAACCGATTC ACGGCAACCGTACAGTGCCATATCACGCCTTCCCATAGCACCAGACTATT TGTACCGTGTGCCGTGTGCCGTGCAACCGTTCCACCAGGTGGACCGAGTG GTTCAGGGCAAGAACCCGAACGCTTTCGTCGCCATCAGACCCCCCGGACA CCACGCCGGGCCTTCGTGAGTCAGAACACGCCGCCGCCGCGGCCGGCTCG TAGTCTCTATTTTGCCTTTGTTCGATTAGATAGAGTACTTTAGCATAAGG CCATATGAAGTATCGTGAGGTGGTGAACGATGTGTCCCCGCCCTCCTCCT TTCCGCAATATCACGGGGGGGAGTGCATGTGGCGTATTTATTCGTATCGG ACTCATACGGTAGGTGGGACCCGCTGTGTGTACGTATCCCCGGTTTTTTG TTGTGGAAGGGCCGTGCAAGCCGCCGTGTTCGCGTAGATGCTGCTGCAAC CTGCTCATCTGCCGCACTCGCTACCACCACCGCCACTTGTGTCTACGAAA ACGGTTTGGCACGAAAAATATGTATTTGTTGTAGAAGGTACAAGTTGTTG TAGAACGCTTGTTGTTCTAGAATGTACATTTTGTTGTGGAATGTACATGT AGACACGACGAAACGAAGCAGTAAAAGCAAGACGATCACCCCTTTTTGCC AACGGAAGGTGTTTCTCTCATGGTAGATACAATTGTGGCGACACCCGCCG GCGCTCGCTCGCCGCCCTCCCCGGCCGGAACACATTAAAGCAAATCCCAG AGAAGTTCTTATCACCTTTCCATGTAGGTATTGGTCTACTGCTGCTGTGG AGTGGGTCGGTCCTTCTCGGGGGGAATCGCCGTGAAGGGTAATTAGTATT CCTACCCCACGCACGTCCTTATCTCTCTCCTGTCGACCCCCCCCCCTGTT TTGGCTCCCCTGCTCACGCACGGGCCGCGGACATCATTTGTTTCTAGATG ATCCCCGTTGCTCTCTCTCTCTCTCTCTTTGACTCTTCGGTCTTTTTGTG GTTGTTCTGCTGAGCAGAGGGGAGGACTGGTCTGAAATCCTCCGTTTGTT TTTCAGAAACCGAGGGCACTCAAGGCCGTCCTCCACATCCCATCCGCTTT ATCTCGCTCACCACCTTCTCAGAATCGTCGAAGCTCGTTGTCCCTCCCGA CGTTCCGGGGTATGTAATCTGTTCGTTGTTACTGGCTTTGATGATGTTGA TGTTGATGTTGGTGTGTTATTGCCCCTCTCAACTGTTTTTGCCTGCCTCG GTTTTTGTCGTCGTTGTTGTATTGATGCTGATGTCTGTCTTTGTTCTTCG TTTTTCTTTTTTACTTGCAGCGGGTCCGTCCCGGCCTCGTCCTTCTGGAA GAACCCCGGCATGAACAGCAGTGGCTTCTGCCTGCTCAACAACGCGGCCA TCGGAGCGGCGTACGCCAGATGCAGGTAGGTAGCGAGCACAGGCGTAACA GCAGAATACGAGAGCGAAAATGCAGATGACGCACTATACACATTGCCGGC AGCGACGACTATGCAGCGCGATGTGTTGTCGAAGATCGTCTTTGCCGCTG ATTTTGGGGGTGGTGGTGGTGATTGGTTGGTTGTCTTCTGCCGCTGCTGG CGTTAGACACGCATATCGCAGGATGCCGTTTTTGGTTGGTGGTTGGAAAT GACCACACTGCTGCCGCTGCCTCTGCTCCTGAATGTCTGCCATCTGTTGG ATCGTTGGAAGGTACGGGAGGTCTGGCGAGCTGTCTCGAGTGGCCATCGT GGACATCGACATACACCACGGCAACGGCACGGAGGAGATCGTACGGTAAG CAACGCGAGAGACGAAAGGAAAGACAAATAATTTACGACAGCAGTCGCAG CCACAGCCGTAGCAGCAGAAGCAGCACAAGAAGCAGCGGCAGTAGCAGTA GCTCACAAGGCTTTGCTTCGTGAAACTCCGATATCTCTATCGGGTGATCG ATATGTCGATCTTAGACAGAGACAGTAGAGAATTTGTCGTTCTTTCGACG CCGTTAAAACGTAGCTCCGATTGCCGTCCATGTTGTTATTTAGGTGCCCG GTTAATAAACCAGCAGCATCAGCAGCGATAGGAAAGACGTCGGTGGCAGG TTCGAGGCTCCACGCAAGTGCCGGCCATTCGCACCATAGATTACCGTTCG CACTGGTAGATGTTGGCCCCTAATCCTCCTTCGGCCATGTTGCACCGCCA CGCCTAAGATGATACTGTTGTTTACTTCAAAATCCCTTGGTTATTGCCGC ACCGAGCGGAAAATTAAGTAGATTCCAGGTGTCGGTCTACTCGCAAGGCA GCCACCAAAAGCAGCACAGACGGTGGGGTCGGTTGCTTCAACGACAACCG CTCTTAAGTGCCGCTTCGGTTGTGTCATCGTGGTCGTCTAGGTGCCTGCG GCCTATGACCACGCGGTTGCCGCTGCCCCCGAGCTGGCCGCCCATGACGA AGACCGTGTACAAGCCTTGGCTGGACGATGGCGACGCGGACAACGTCTTC TTCGGGTCGGTCAGCCTCCAGGACAAAGACATGTTCTACCCGGCATCGGG CAAGTGTCTTCCTGTTGCTGTTGTTGCTGTTGTTGCTGCTGCTACTGGTA AGCTGCTGCTGATGCGCTTTCGCAACAAACAAGTGTTGTCTTGTGACCGA AATCGGGCCTCGGTCTTTTGAGTTGGTCTGGCATGGGTGCGGGAGGGGGA GGCCGAGGAGGTTGTTGGAGGACGCAGACTCGCATCCTTCATCGTGCCAG TTGCTGCGTTTCTGCGTATCTCCTCTCATTCTGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1319:2395..10429+

>mRNA_Ecto-sp13_S_contig1319.2586.1 ID=mRNA_Ecto-sp13_S_contig1319.2586.1|Name=mRNA_Ecto-sp13_S_contig1319.2586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1319:2395..10429+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTTGTCGTCCTCTCCGTCGATCCGCCGCTCGTCTTCCCCCACTCG
CCGGACGTCCGCCATGTCCCGCCGCTCGTCCTCCTCGTCGTCCCCTTCCC
GCCGCCGCCGAGCGAGCGCCGCCGCCGCCACCGCTGCGGCCGCTGTCGAC
CGCAAGAACCGGGCGGCGTCACACACTACGCCCAGCCGCGGTGGCGGCGG
CAGCGATGGGGGCGTGAATGCCAACGCGGGCACCGGGTCCGTCGAGGGCT
GGATGAGCAGAAAACGGCGGGAATTTCCCTGCGCAAGCAGCAGCCGCAGC
AGCGGCAGCGGCGGCAACGGCGGCGGCAGCGGGCAGAAGCAGGCCACGGG
CGCGATGGACATGGAGGTGGAGGAAAGGGACGGGGGGGAAGAGAGGAGGA
GGGGCGTCGATATCGCGTCGTTTTCTCCGTACGCGGCTCGCCTCGGCTGG
GGCGGCAGCGGCAGCACCAACAGCCCGGGGGATGAAGTGGGGCGCGCTAC
GGCCAGGCTTGCAGGCCTGCAATTCGAGCACGGGGACGGGGATGACGGGG
ACGACCAGGAATGGGCGATGGAGTCCCCCGCGAAGAAGCACCACCACGAC
CACGACATCTACCGTAAAGACGGCGCATCGCCCGCCCCCACCGGAGGGGT
CAGCGGTGGTATTTACTTCAGGATGCACTTCTTCAAGGAAGAGGATGCGC
CCCCGTCCCTGCCGCCGCCGCCTCCCCCGCCAGCGGCGACTACGGTCGAA
CGATCTCCCGAGATCACCGCCGCCGCGAGAGCGGGAACGTCAGCGGCAAG
AGCGGCAGCAGCGGCAGCAGCAGCAGCGGTCATACCCGTGGAAAATATGA
TTGTTGAGGGCACGCCCGCCCAAAACATGGCCATCACGGGCGCTCCCTCC
TCTTGCGTTGGCGGCCTGCGCCAGGAGGGAGGGGACGAATCGATGGCGTC
CCCGCCCTCGAAGGCGGCGGCGACGGAGAGGCGCACTCTGGTAGTTTACC
CACCGGAGTGCCTCCTGCACATGGGGGTCGAGGACCGCGAGAACCACCAG
GAGAAGCCCAAGCGACTCGAGCTGCTGTGCGGGGAGCAAGGCGCCCTACG
CAGGACTGCCTTCCAAGGAGGACTGGAGTGGGTGGACCCGTCTTTCATCG
AACCCGCGCTCATCACCGATCTGCTGAGGGTGCACGAGTACGACTACCTC
GTGCACATACAGGCGAGTTGGTCGTGGGGTCGTACGTTCTGCGAGCGTTG
CGCAGGAGCGCCCCCGTCCAGCACCCCGCTTGGTCCACGCACTGCCGCAG
TTGACCACCACCACGGCCATCACGGCCACAACCAGCTCCCGCCGCAGCTG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCCGAGCAAGAAGGA
GGAACAAGCTGCGGGTGACGGCAGAGGCGGCTTCGGGCAAAGATTCGAGG
CCGACGTCGGGTATGTGGACGTGGACACGAGGGTCTCGAGGGAGTCGTAC
GGGGCGGCGACGACGGCTGCCGGGGCGGTCATCCTGGCGGTGGACCGAGT
GGTTCAGGGCAAGAACCCGAACGCTTTCGTCGCCATCAGACCCCCCGGAC
ACCACGCCGGGCCTTCCGGGTCCGTCCCGGCCTCGTCCTTCTGGAAGAAC
CCCGGCATGAACAGCAGTGGCTTCTGCCTGCTCAACAACGCGGCCATCGG
AGCGGCGTACGCCAGATGCAGGTACGGGAGGTCTGGCGAGCTGTCTCGAG
TGGCCATCGTGGACATCGACATACACCACGGCAACGGCACGGAGGAGATC
GTACGGTGCCTGCGGCCTATGACCACGCGGTTGCCGCTGCCCCCGAGCTG
GCCGCCCATGACGAAGACCGTGTACAAGCCTTGGCTGGACGATGGCGACG
CGGACAACGTCTTCTTCGGGTCGGTCAGCCTCCAGGACAAAGACATGTTC
TACCCGGCATCGGGCAAGTGTCTTCCTGTTGCTGTTGTTGCTGTTGTTGC
TGCTGCTACTGGTAAGCTGCTGCTGATGCGCTTTCGCAACAAACAAGTGT
TGTCTTGTGACCGAAATCGGGCCTCGGTCTTTTGA
back to top