mRNA_Ecto-sp13_S_contig13189.2585.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13189.2585.1
Unique NamemRNA_Ecto-sp13_S_contig13189.2585.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13189.2585.1 vs. uniprot
Match: A0A6H5KX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX21_9PHAE)

HSP 1 Score: 553 bits (1424), Expect = 6.650e-189
Identity = 337/376 (89.63%), Postives = 344/376 (91.49%), Query Frame = 1 
Query:    1 MASVAALAFCSAAAPSHVSFLGATGSLGTSHWAAAFPTNSRAXXXXXXSTSSLRPKEYVNVKHGGRSRRRPLLSLTRAGPWSPPPPLPASALRDSAPRERHREXXXXXXXXXXXXXXXXXXRTLLRRVRGARAPPXRTXXXXXXXXXXXXXAGAERPPAKLKHAGLVLVPWLWRPFQQPVVAKSAGGAAAGPVLEVGARTMSATTRVTKPALSFVQLQVRREAILSALILVVAPLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRVAAARSLWTWSDLGRGLIKTPGWLHASVAWWRGAATLLAGAGAVARILVLLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP 1128
            MASVAALAFCSAAAPSHVS +G+TG+L TSHWAAAFPTNS  XXXXXX TSSLRPKEYVNVKHGGRSRRRP LSLTRAGPWS PPPLPASALRDSAPRERHRE XXXXXXXXXXXXXXXXX              X  XXXXXXXXXXXX AGAERPPA+LKHAGLVLVPWLW PFQQPVVAKSAGGAAAGPVLEVGARTMSATTRVTK ALSFVQLQVRREAILSALIL+VAPL+LRWWARREAEHHDTLECRNVVQTYLIASSGW CAVLAAVAGKPISAVVLQAAWR AAARSLWTWSDLGRGL KTPGWLHASVAWWRGAATL+AGAGAVARILVLLIA TGTWTATTAAGALCAP LDFLPAGLVRWASTP
Sbjct:    1 MASVAALAFCSAAAPSHVSCMGSTGALSTSHWAAAFPTNSXXXXXXXXXTSSLRPKEYVNVKHGGRSRRRPPLSLTRAGPWSTPPPLPASALRDSAPRERHREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGAERPPAQLKHAGLVLVPWLWWPFQQPVVAKSAGGAAAGPVLEVGARTMSATTRVTKSALSFVQLQVRREAILSALILIVAPLVLRWWARREAEHHDTLECRNVVQTYLIASSGWVCAVLAAVAGKPISAVVLQAAWRAAAARSLWTWSDLGRGLTKTPGWLHASVAWWRGAATLVAGAGAVARILVLLIATTGTWTATTAAGALCAPILDFLPAGLVRWASTP 376
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BLAST of mRNA_Ecto-sp13_S_contig13189.2585.1 vs. uniprot
Match: D7FN96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN96_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 3.080e-103
Identity = 170/176 (96.59%), Postives = 171/176 (97.16%), Query Frame = 1 
Query:  601 MSATTRVTKPALSFVQLQVRREAILSALILVVAPLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRVAAARSLWTWSDLGRGLIKTPGWLHASVAWWRGAATLLAGAGAVARILVLLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP 1128
            MSATTR TKPALSFVQLQVRREAILSALILV APLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWR AAARSLWTWSDLGRGLI+TPGWLHASVAWWRGAATLLAGAGAV RIL LLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP
Sbjct:    1 MSATTRATKPALSFVQLQVRREAILSALILVAAPLLLRWWARREAEHHDTLECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRAAAARSLWTWSDLGRGLIRTPGWLHASVAWWRGAATLLAGAGAVTRILGLLIAMTGTWTATTAAGALCAPTLDFLPAGLVRWASTP 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13189.2585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX21_9PHAE6.650e-18989.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN96_ECTSI3.080e-10396.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13189contigEcto-sp13_S_contig13189:2..3278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1128
Hectar predicted targeting categorychloroplast
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003470.1
Cds size1128
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462706.0438411-CDS-Ecto-sp13_S_contig13189:1..221681462706.0438411-CDS-Ecto-sp13_S_contig13189:1..22Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13189 2..22 -
1681462706.053421-CDS-Ecto-sp13_S_contig13189:603..6961681462706.053421-CDS-Ecto-sp13_S_contig13189:603..696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13189 604..696 -
1681462706.062059-CDS-Ecto-sp13_S_contig13189:883..10391681462706.062059-CDS-Ecto-sp13_S_contig13189:883..1039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13189 884..1039 -
1681462706.0705185-CDS-Ecto-sp13_S_contig13189:1580..17901681462706.0705185-CDS-Ecto-sp13_S_contig13189:1580..1790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13189 1581..1790 -
1681462706.0788302-CDS-Ecto-sp13_S_contig13189:2630..32781681462706.0788302-CDS-Ecto-sp13_S_contig13189:2630..3278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13189 2631..3278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13189.2585.1prot_Ecto-sp13_S_contig13189.2585.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13189 2..3278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13189.2585.1

>prot_Ecto-sp13_S_contig13189.2585.1 ID=prot_Ecto-sp13_S_contig13189.2585.1|Name=mRNA_Ecto-sp13_S_contig13189.2585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
MASVAALAFCSAAAPSHVSFLGATGSLGTSHWAAAFPTNSRATAFPTGST
SSLRPKEYVNVKHGGRSRRRPLLSLTRAGPWSPPPPLPASALRDSAPRER
HREEQLQQQQPLPSSTLLAAARTLLRRVRGARAPPPRTPRPAAAAAVAAA
GAGAERPPAKLKHAGLVLVPWLWRPFQQPVVAKSAGGAAAGPVLEVGART
MSATTRVTKPALSFVQLQVRREAILSALILVVAPLLLRWWARREAEHHDT
LECRNVVQTYLIASSGWACAVLAAVAGKPISAVVLQAAWRVAAARSLWTW
SDLGRGLIKTPGWLHASVAWWRGAATLLAGAGAVARILVLLIAMTGTWTA
TTAAGALCAPTLDFLPAGLVRWASTP
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mRNA from alignment at Ecto-sp13_S_contig13189:2..3278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13189.2585.1 ID=mRNA_Ecto-sp13_S_contig13189.2585.1|Name=mRNA_Ecto-sp13_S_contig13189.2585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3277bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13189:2..3278- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGCGTTGCGGCCCTCGCCTTCTGTTCCGCTGCTGCTCCATCCCA
TGTGAGCTTCCTGGGAGCCACTGGTTCGTTGGGCACCAGCCACTGGGCGG
CAGCGTTCCCAACCAACAGCAGGGCAACAGCGTTCCCGACCGGCAGCACC
AGCAGCCTGCGGCCGAAGGAATACGTCAACGTCAAGCACGGCGGCCGGAG
CAGACGAAGACCGCTGTTGTCATTGACCCGGGCGGGGCCGTGGTCGCCGC
CACCGCCACTGCCTGCGAGCGCGTTGCGTGACAGTGCTCCGCGGGAGAGA
CATCGCGAGGAGCAGCTTCAGCAACAACAACCGCTACCTTCCTCCACGCT
GCTCGCGGCTGCGCGTACGTTGTTGCGCCGCGTCCGTGGAGCCAGAGCAC
CGCCACCACGAACACCAAGACCAGCCGCCGCCGCGGCGGTGGCGGCGGCG
GGGGCGGGGGCAGAGCGTCCACCCGCTAAACTTAAGCACGCGGGGCTTGT
GCTGGTGCCGTGGCTGTGGCGGCCCTTCCAGCAGCCAGTCGTCGCAAAGT
CCGCCGGAGGTGCGGCGGCGGGGCCGGTTCTGGAAGTTGGGGCGAGGACG
ATGTCGGCGACGACTCGCGTAACCAAGCCGGCCCTCTCCTTTGTTCAGGT
TAGCACACATGCCCCCCTGAAGATCTTCGACTCATTGTCTCGTTGCACAA
AGCTATTGCTTCGGTTGTATGCGTAGCAATTGTTTTTTGGTAAATGTATA
TGCGTACCCGCGATGACTTTCGATACATACTAGGTGTGCGACGGCGAACC
ATCGATTCAGGCACTGGCTGCTTCATGCTCACTCGTCTTCATGAATGCTT
CACTGATGCATCACGCGCGGGCGAACGACCCTTGTACGTACCCCAGCAGG
GAATCTGGGTTTACACTTGCTGGGGGGAGTATAGGCTTTGTAATTTCTCT
CACAGACAAATACACACACACACGCACATGAGCTAGACCGCGTTTTGCCA
TGTGATCATCGGGGAAAGGAGGTGTCCTCTTGATTACACGCGCCTGTTTC
TCGCTGTCGCAGCTCGTTTCTCGTGTGCAGTCCAGAGGTTGCACCGCAAG
ATGTAAAACGAGCCTTACAGAGCTGCAAAAAGGAAAGCAAATAAAAGCTA
GGTCGCTGATAATCGCACGTGATCCCTGCCTTTTTTTATTGCGGGGCAGG
CGCCTATTCGTCCATGCATCTTGATGAGCGCGTCCTCTGTTCCCCGCCCC
CCTTGCCTGTCAACGACATCGCGCGAGACTTGCGCTACACGACATGTCGC
CCCCAACGTGCTTCGCACTCGATGCGCTTGCCGGCAGAGTGGCGGGCAAG
CCCCCACCCAAAACCCGCGCCCAGCCTTCATAGGAACCGTAGTACCCTCC
GCCTTTGGAACGTAGTGTACGCATAGACGACAAAGCGGAGCTCACCTCAC
CCCGTGCCGCCGCGCGCCGCCCGTGTGACAACCTACAGCTCCAAGTGCGG
CGTGAGGCCATCCTGTCCGCGCTTATTCTAGTCGTGGCCCCTCTTCTGCT
ACGGTGGTGGGCGAGGAGGGAGGCAGAGCACCACGACACGCTGGAGTGCC
GCAACGTTGTGCAGACGTACCTTATTGCATCCAGCGGGTGGGCGTGCGCG
GTGCTAGCAGCGGTAGCGGGCAAGCCAATATCTGCCGTTGTGCTTCAGGT
ATTTTTCTTTCAATTCTTGATGGAGAGGGGCGCGCGTATTCATGTTTGTT
CATTCCTTGGCGTAACCATGCGTCATCGAGAGGACAGGACATTGTTTCCC
GCAGGACCGTGATATAGGGGGTGCAAACAGCATGTAAATAGCCCACAAGG
CGAGAAGAAGCGGCACATCGGGTCTGGTGTTCGTGTGTGTTCACTGTACG
TGGAGCGCCGTGCGCATACAAGGAGCGTGCGACCATCACGTTGTTGTGTC
CGTGGCGAAGCGCCCAGCAGTATGAAGCCCTCACAGCATCCTGTGCTTGA
AATTCAATCCGTGGGAGCCTTTGCCACAAGCTGATCTGAAGGTAGTTCGC
ACCTTCATTTTTCCGGTCCTATCTCCTGCGTCTTCGGAAGGCAGACAAGA
CGGCACGACCGTTGGCAGAGGAGATGAGATCAATGTAACTCACACTCACC
CATGTGTACCATTCTTTTGGAGCGATTTTATTTGTTTCTCTATCTGGGAA
ATCATGAAAATAACATGGCGGCGACGGCGACGACGCAAGGCGGCGTGGAG
GGTGGCGGCGGCGCGGTCGCTCTGGACGTGGTCTGACCTGGGGAGGGGGC
TGATCAAGACCCCCGGCTGGCTTCACGCCTCCGTGGCATGGTGGCGGGGA
GCAGCAACCCTTCTCGCCGGCGCCGGCGCAGTGGCTAGGATCCTGGTGGG
TGTCGCGGAGCCCCCCCCCCGCCCTTGTTGTATTTTCCTACGTCTTCTGT
GCATTGATCGGATGCGCGCCGTTATGGGCACGGATATGACGGACAACCCT
TACCCCCTCTTGAGTTGTTTGGGCATCTGCTTTAGCTCCCTTTTCGTCTT
CAAGCTTTTTTTTTATGTTTTCGACGAAACAGGTGCTCCTCATCGCCATG
ACGGGGACTTGGACAGCGACGACTGCGGCGGGCGCATTGTGTGCCCCGAC
CCTTGACTTTCTTCCCGCTGGGCTGGTGAGTCGACGGAGGGTACCAGCTC
GTGCAGTAGTCTACGTCATCGTAGGAGTAGGAAGTGGTGTGTGCTTTCGG
CCCGTCTGGCGCCACTTCATACACGCTGCTGTGACATATCTGTTTTACGT
ATATCAGACCATCAGACGAGGTCACAATACACACACACCAGAAGAGAAGA
CGAGGTCACACAAGGGAAACGTCTTACAGGAGCTTGTTTCAGTCGTGTAA
TAGAACTAGAAATTGTGAAGGAGTTGTACTGAGGAGTAGTAGTGGTAGTG
GTGGTGGTGCATTGAGAGGGCAGGTTAAGTTGCACGTTTTGTCTCCGACG
TGGGAGTCATTCCTTGTCGAGCGTGCTGGCTTGGGGAAAATCGTGAGGGT
TTAAGGTGCTTGTCACGCACCTTTTTGCGTGGTGCAAGAATAACCTCAGC
GGAAACCAACAGGTGATGGGGGTATTATTTGCCGCGGTTGGCCACGATCC
AATGAAATGACGACCGGAACGCACATGAACGCCGAGTGTTTTTTTTTATG
TTTCATCCCCCCTTTCGGCGTGATACGTTGAACGTCGTCGCGACAAACGA
GAACAGGTGAGATGGGCATCTACGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13189:2..3278-

>mRNA_Ecto-sp13_S_contig13189.2585.1 ID=mRNA_Ecto-sp13_S_contig13189.2585.1|Name=mRNA_Ecto-sp13_S_contig13189.2585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13189:2..3278- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGCGTTGCGGCCCTCGCCTTCTGTTCCGCTGCTGCTCCATCCCA
TGTGAGCTTCCTGGGAGCCACTGGTTCGTTGGGCACCAGCCACTGGGCGG
CAGCGTTCCCAACCAACAGCAGGGCAACAGCGTTCCCGACCGGCAGCACC
AGCAGCCTGCGGCCGAAGGAATACGTCAACGTCAAGCACGGCGGCCGGAG
CAGACGAAGACCGCTGTTGTCATTGACCCGGGCGGGGCCGTGGTCGCCGC
CACCGCCACTGCCTGCGAGCGCGTTGCGTGACAGTGCTCCGCGGGAGAGA
CATCGCGAGGAGCAGCTTCAGCAACAACAACCGCTACCTTCCTCCACGCT
GCTCGCGGCTGCGCGTACGTTGTTGCGCCGCGTCCGTGGAGCCAGAGCAC
CGCCACCACGAACACCAAGACCAGCCGCCGCCGCGGCGGTGGCGGCGGCG
GGGGCGGGGGCAGAGCGTCCACCCGCTAAACTTAAGCACGCGGGGCTTGT
GCTGGTGCCGTGGCTGTGGCGGCCCTTCCAGCAGCCAGTCGTCGCAAAGT
CCGCCGGAGGTGCGGCGGCGGGGCCGGTTCTGGAAGTTGGGGCGAGGACG
ATGTCGGCGACGACTCGCGTAACCAAGCCGGCCCTCTCCTTTGTTCAGCT
CCAAGTGCGGCGTGAGGCCATCCTGTCCGCGCTTATTCTAGTCGTGGCCC
CTCTTCTGCTACGGTGGTGGGCGAGGAGGGAGGCAGAGCACCACGACACG
CTGGAGTGCCGCAACGTTGTGCAGACGTACCTTATTGCATCCAGCGGGTG
GGCGTGCGCGGTGCTAGCAGCGGTAGCGGGCAAGCCAATATCTGCCGTTG
TGCTTCAGGCGGCGTGGAGGGTGGCGGCGGCGCGGTCGCTCTGGACGTGG
TCTGACCTGGGGAGGGGGCTGATCAAGACCCCCGGCTGGCTTCACGCCTC
CGTGGCATGGTGGCGGGGAGCAGCAACCCTTCTCGCCGGCGCCGGCGCAG
TGGCTAGGATCCTGGTGCTCCTCATCGCCATGACGGGGACTTGGACAGCG
ACGACTGCGGCGGGCGCATTGTGTGCCCCGACCCTTGACTTTCTTCCCGC
TGGGCTGGTGAGATGGGCATCTACGCCG
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