mRNA_Ecto-sp13_S_contig13146.2557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13146.2557.1
Unique NamemRNA_Ecto-sp13_S_contig13146.2557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: D8LGI2_ECTSI (Histone deacetylase superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI2_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.460e-59
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 AAHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            AAHG+ERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGP+FYPGTGFDDITGVQSNIVNVSMGDGEGSGGFR AY+EKILPALEGFRPGLIVISAG
Sbjct:   42 AAHGIERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPEFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRTAYTEKILPALEGFRPGLIVISAG 138
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: A0A6H5KT92_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT92_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 8.260e-55
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 AAHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            AAHGVERVAVVDIDVHHGNGTQALFEEDPTT YASTHQGP+FYPGTGFDDITGV SNI NVSMGDGEGS GFRAAYSEKILPALEGFRPGLIVISAG
Sbjct:  256 AAHGVERVAVVDIDVHHGNGTQALFEEDPTTLYASTHQGPNFYPGTGFDDITGVHSNIFNVSMGDGEGSRGFRAAYSEKILPALEGFRPGLIVISAG 352
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: A0A522VAA4_9PROT (Histone deacetylase family protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A522VAA4_9PROT)

HSP 1 Score: 132 bits (333), Expect = 5.960e-36
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 AAHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            A HG++RVAVVD DVHHGNGTQ L E+DP  FYASTHQ P  YPGTG+ D TGV  N+VNV +  G GS GFRAA++ ++LPALE F+PGLI+ISAG
Sbjct:  149 AVHGIQRVAVVDWDVHHGNGTQHLMEDDPDFFYASTHQSP-LYPGTGWADETGVAGNVVNVPLPPGTGSQGFRAAFATRVLPALEEFQPGLILISAG 244
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: UPI001A909BF9 (histone deacetylase family protein n=1 Tax=Sneathiella sedimenti TaxID=2816034 RepID=UPI001A909BF9)

HSP 1 Score: 124 bits (310), Expect = 1.550e-32
Identity = 64/95 (67.37%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    7 HGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            +G+ER+AVVD DVHHGNGTQA+FE DP  FYASTHQ P FYPGTG    TGV  NIVNV +  G GS  FR AY   ILPALE FRP L++ISAG
Sbjct:  151 YGLERIAVVDFDVHHGNGTQAIFERDPGMFYASTHQAP-FYPGTGDASETGV-GNIVNVPLAAGSGSRAFREAYDTVILPALEAFRPELVIISAG 243
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: A0A7U6Y8G6_9PROT (Histone deacetylase superfamily n=1 Tax=Rhodospirillaceae bacterium LM-1 TaxID=2682548 RepID=A0A7U6Y8G6_9PROT)

HSP 1 Score: 124 bits (310), Expect = 1.580e-32
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    4 AHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            AHG++R+AVVD DVHHGNG+Q L E+DP  FYASTHQ P  YPGTG+ D TGV  N+VNV +  G    GFRAA++ +ILPALE F+P LI+ISAG
Sbjct:  150 AHGLKRIAVVDWDVHHGNGSQHLMEDDPDFFYASTHQSP-LYPGTGWADETGVAGNVVNVPLPPGTDGQGFRAAFANRILPALEAFQPELILISAG 244
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: UPI00146E0C3A (histone deacetylase family protein n=1 Tax=Sneathiella limimaris TaxID=1964213 RepID=UPI00146E0C3A)

HSP 1 Score: 123 bits (309), Expect = 2.230e-32
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    7 HGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            +G+ R+AV+D DVHHGNGTQ +FE+DP  FY STHQ P FYPGTG+ + TGV  NIVNV + +G GS  FR AY + +LPALE F P L++ISAG
Sbjct:  151 YGLTRIAVIDFDVHHGNGTQHIFEKDPDLFYGSTHQSPPFYPGTGYANETGV-GNIVNVPLVEGSGSKAFRDAYKDTVLPALESFNPELLIISAG 244
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: UPI00200B742A (histone deacetylase family protein n=1 Tax=Roseomonas sp. NAR14 TaxID=2937791 RepID=UPI00200B742A)

HSP 1 Score: 121 bits (303), Expect = 1.770e-31
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 AAHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            AAHG+ RVAVVD DVHHGNGTQA+FE DPT FYAS+HQ P  YPGTG +D TGV  NIVN ++  G     FRAA+++++LPALE F P L+V+SAG
Sbjct:  151 AAHGLGRVAVVDFDVHHGNGTQAIFERDPTLFYASSHQYP-CYPGTGLEDETGV-GNIVNATLPPGATGVEFRAAWADRLLPALEAFAPELLVVSAG 245
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: A0A317EBB5_9PROT (Acetoin utilization protein n=1 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317EBB5_9PROT)

HSP 1 Score: 121 bits (303), Expect = 1.800e-31
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    4 AHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            AHG+ER+AVVD DVHHGNGTQA+FE+DP  FYASTHQ P  YPGTG    TGV  NIVN  +  G     FR +++E + PALE FRP LI++SAG
Sbjct:  152 AHGLERIAVVDFDVHHGNGTQAMFEKDPGLFYASTHQAP-LYPGTGAAGDTGVADNIVNAPLPPGADGPAFRKSFAEHVFPALEAFRPELILVSAG 246
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: A0A521QTH9_9HYPH (Histone deacetylase family protein n=2 Tax=Reyranella TaxID=445219 RepID=A0A521QTH9_9HYPH)

HSP 1 Score: 121 bits (303), Expect = 1.840e-31
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 AAHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            AA  VERVA++D DVHHG GTQA+ E +PT FYASTHQ P  YPGTGF    G+  N+VNV +  G GS  FR A+ E+ILPAL+GF P L+++SAG
Sbjct:  149 AAFAVERVAIIDFDVHHGQGTQAVVEPEPTLFYASTHQYP-LYPGTGFPRERGIAGNVVNVPLAAGSGSAEFRTAWGERILPALDGFAPELVIVSAG 244
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BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Match: A0A845QC43_9HYPH (Histone deacetylase family protein n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QC43_9HYPH)

HSP 1 Score: 120 bits (301), Expect = 3.430e-31
Identity = 61/97 (62.89%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 AAHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDDITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG 291
            A HG+ERVAVVD DVHHGNGT+A F  +PT FYASTHQ P  YPGTG  D+TGV  NI+NV +         RAAY EKILPAL+ F P L++ISAG
Sbjct:  149 AVHGLERVAVVDFDVHHGNGTEAAFFHEPTLFYASTHQHP-LYPGTGAADVTGVADNILNVPLPPHADGAMMRAAYEEKILPALDRFAPQLLIISAG 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13146.2557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI2_ECTSI2.460e-5995.88Histone deacetylase superfamily protein n=1 Tax=Ec... [more]
A0A6H5KT92_9PHAE8.260e-5594.85Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A522VAA4_9PROT5.960e-3667.01Histone deacetylase family protein n=1 Tax=Rhodosp... [more]
UPI001A909BF91.550e-3267.37histone deacetylase family protein n=1 Tax=Sneathi... [more]
A0A7U6Y8G6_9PROT1.580e-3263.54Histone deacetylase superfamily n=1 Tax=Rhodospiri... [more]
UPI00146E0C3A2.230e-3261.05histone deacetylase family protein n=1 Tax=Sneathi... [more]
UPI00200B742A1.770e-3163.92histone deacetylase family protein n=1 Tax=Roseomo... [more]
A0A317EBB5_9PROT1.800e-3161.46Acetoin utilization protein n=1 Tax=Zavarzinia aqu... [more]
A0A521QTH9_9HYPH1.840e-3159.79Histone deacetylase family protein n=2 Tax=Reyrane... [more]
A0A845QC43_9HYPH3.430e-3162.89Histone deacetylase family protein n=1 Tax=Pyruvat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13146contigEcto-sp13_S_contig13146:3438..4815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score196.4
Seed ortholog evalue6e-48
Seed eggNOG ortholog2880.D8LGI2
Model size291
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006476,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0015631,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0033558,GO:0035601,GO:0036211,GO:0042903,GO:0043014,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043621,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048487,GO:0051721,GO:0071704,GO:0090042,GO:0098732,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
Cds size291
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.835643-CDS-Ecto-sp13_S_contig13146:3437..35511681462703.835643-CDS-Ecto-sp13_S_contig13146:3437..3551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13146 3438..3551 +
1681462703.8471577-CDS-Ecto-sp13_S_contig13146:4638..48151681462703.8471577-CDS-Ecto-sp13_S_contig13146:4638..4815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13146 4639..4815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13146.2557.1prot_Ecto-sp13_S_contig13146.2557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13146 3438..4815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13146.2557.1

>prot_Ecto-sp13_S_contig13146.2557.1 ID=prot_Ecto-sp13_S_contig13146.2557.1|Name=mRNA_Ecto-sp13_S_contig13146.2557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
AAHGVERVAVVDIDVHHGNGTQALFEEDPTTFYASTHQGPDFYPGTGFDD
ITGVQSNIVNVSMGDGEGSGGFRAAYSEKILPALEGFRPGLIVISAG
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mRNA from alignment at Ecto-sp13_S_contig13146:3438..4815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13146.2557.1 ID=mRNA_Ecto-sp13_S_contig13146.2557.1|Name=mRNA_Ecto-sp13_S_contig13146.2557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13146:3438..4815+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGCACGGCGTCGAGCGCGTTGCGGTAGTCGACATCGACGTTCACCA
CGGGAACGGTACCCAGGCGCTGTTCGAGGAGGACCCCACGACGTTCTACG
CCTCCACCCACCAGGTAGGTGCATGTTGTGTGCGACTTCGTCGTCGGCAT
CGACCGCGCTAAATTGACTGGTTGAGCAATGAAAATACGTCAGTCTCGGT
GCGGCTGAAAACAGACAGAAGCGTCTCTGTGACCCCGCGATGGGGCGTCA
TGGGAGTGTTTGTATGTAGGTGTGTATATATGTAGGTGTGTAGGTGTGTA
TGTGTATGTATGTGTGTATGTATGTATGTATGCATGTATGTATGCATGTA
TGTATGTATGTTTGTATGTATGTGTGCAAGAAAGATGCCGTCACGGAGAC
TTGAGGCAACGAGGCTCCTGGTGTTTTGTTTGCAAGGTGTTCGGTGTTCA
TTGGTGGCCGGTACCCTTGGTCGCCAGGATTGGAGGCCCTGCCACCCGTC
GAGACTCGAAAGCCTCGTCATGTCAGCAAAGCTGAGTACCGGCGTTTGGT
TGGGGTGCACGTAGTAGCGCGCGCGCGCCTGCGCCCGAGCGTAGAAAAGT
CGACGATCGTCGAAGAAGGTCGAGAAAGATGTTCCTCGGCTTATTACACA
AGTTTTACGTCTCATGAGTGGGCAGAAACTCATGCTACCGTTCATGTTTC
AGTCTTCAAGTCTTTCGTCTTGTGTATCTGACAATCTGTAGGTGTGTGTT
GGTGAGTTTCGACGTGTTTGTTTTTTCTGTGTTGGCGAGTGGGCCGGCGG
CGCTGGTGCACAATAACAGCTGTCTTACGACACTACTGTCATCGTGGTTC
CTTGGGATGAAACAGCAGAGTGACGGTCCTCCACCGAACGATAGTGAGGG
TACAGGCAGGCGTTCGCTTGTCTAGTCCTGCAACCCAACCCGTAGCCCTA
GCCCCGCTAAGGTTGCCGCTTTCCCTCTATGACATCACCGACAGCGAAAG
CAGCCAAGTTGCTGCAACCAACAACCATGACCCCTCCATCCAGCGTCACT
CCGCATTCGTTCGTCCCTGCTGCGCCTGCTGGAGTTGCAACTGCTGCCGA
GAGTGACCCCCGCATTTTGTAATAAATTGCTTCTTTTTGTCAAGTCTCGC
GTTGTCTCAAGCGCACCCCTCCCCCTCCCCGACCCCTCCTCCGCTCTACA
GGGCCCCGACTTTTATCCCGGTACCGGGTTCGACGACATCACGGGGGTTC
AGAGCAACATTGTCAACGTCAGCATGGGAGACGGGGAAGGTTCCGGTGGG
TTCCGCGCGGCGTACTCGGAGAAGATTCTGCCCGCTCTGGAAGGGTTTCG
ACCAGGCCTGATCGTGATTTCTGCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13146:3438..4815+

>mRNA_Ecto-sp13_S_contig13146.2557.1 ID=mRNA_Ecto-sp13_S_contig13146.2557.1|Name=mRNA_Ecto-sp13_S_contig13146.2557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13146:3438..4815+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGCACGGCGTCGAGCGCGTTGCGGTAGTCGACATCGACGTTCACCA
CGGGAACGGTACCCAGGCGCTGTTCGAGGAGGACCCCACGACGTTCTACG
CCTCCACCCACCAGGGCCCCGACTTTTATCCCGGTACCGGGTTCGACGAC
ATCACGGGGGTTCAGAGCAACATTGTCAACGTCAGCATGGGAGACGGGGA
AGGTTCCGGTGGGTTCCGCGCGGCGTACTCGGAGAAGATTCTGCCCGCTC
TGGAAGGGTTTCGACCAGGCCTGATCGTGATTTCTGCAGGT
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