mRNA_Ecto-sp13_S_contig13133.2549.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13133.2549.1
Unique NamemRNA_Ecto-sp13_S_contig13133.2549.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13133.2549.1 vs. uniprot
Match: D8LT44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT44_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.260e-9
Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 1 
Query:    1 KPSSVVPEHRKRAICVWSSILLAVFLYTIWQVIVLINQQEHPSTAFNVSNDRFAFPYVSVCLEDGFGCYHPDGSTEDCVQS----------AIQYSDAEYE----GETIEAIADEQYPNCVGFDLSQ---FEVPEGEREGPQQSVLLVMYW 402
            KP  VVP H++RA+ +W+++++ +  Y+ + +   + ++E P T F +SN+ + +P + VCL   +GC   +   E+CV S          A+ Y   EYE    GE I  ++ ++   CV ++ S    F   E E       +LL M W
Sbjct:    3 KPEEVVPRHKRRAVLLWTTLIVGIISYSTYTLYRGLKRREDPGTTFKLSNNIYQYPDLWVCLYVNYGCDEME-LQEECVNSSNATEGGETLAVFYPGGEYEQVIPGEQI--LSKDKGFFCVEYETSTITTFLGQEPETGEYLDHILLDMSW 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13133.2549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT44_ECTSI6.260e-929.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13133contigEcto-sp13_S_contig13133:21..3262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size669
Hectar predicted targeting categorysignal anchor
Exons7
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_002290.1
Cds size669
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13133.2549.1prot_Ecto-sp13_S_contig13133.2549.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13133 21..3262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.285189-CDS-Ecto-sp13_S_contig13133:20..1341681462703.285189-CDS-Ecto-sp13_S_contig13133:20..134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13133 21..134 -
1681462703.2962375-CDS-Ecto-sp13_S_contig13133:394..5091681462703.2962375-CDS-Ecto-sp13_S_contig13133:394..509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13133 395..509 -
1681462703.306502-CDS-Ecto-sp13_S_contig13133:895..9421681462703.306502-CDS-Ecto-sp13_S_contig13133:895..942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13133 896..942 -
1681462703.3160212-CDS-Ecto-sp13_S_contig13133:1457..15441681462703.3160212-CDS-Ecto-sp13_S_contig13133:1457..1544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13133 1458..1544 -
1681462703.324524-CDS-Ecto-sp13_S_contig13133:1854..20131681462703.324524-CDS-Ecto-sp13_S_contig13133:1854..2013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13133 1855..2013 -
1681462703.3333857-CDS-Ecto-sp13_S_contig13133:2318..23861681462703.3333857-CDS-Ecto-sp13_S_contig13133:2318..2386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13133 2319..2386 -
1681462703.343518-CDS-Ecto-sp13_S_contig13133:3183..32621681462703.343518-CDS-Ecto-sp13_S_contig13133:3183..3262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13133 3184..3262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13133.2549.1

>prot_Ecto-sp13_S_contig13133.2549.1 ID=prot_Ecto-sp13_S_contig13133.2549.1|Name=mRNA_Ecto-sp13_S_contig13133.2549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
KPSSVVPEHRKRAICVWSSILLAVFLYTIWQVIVLINQQEHPSTAFNVSN
DRFAFPYVSVCLEDGFGCYHPDGSTEDCVQSAIQYSDAEYEGETIEAIAD
EQYPNCVGFDLSQFEVPEGEREGPQQSVLLVMYWTASEDPTAETEYSESV
EVVLGGPDDNEEITTVPYSRNLESSTEEIYAISAMTIGKTHRTFLDKDPV
TSYPALTVSTTKYVVPEVSSLSE
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mRNA from alignment at Ecto-sp13_S_contig13133:21..3262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13133.2549.1 ID=mRNA_Ecto-sp13_S_contig13133.2549.1|Name=mRNA_Ecto-sp13_S_contig13133.2549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13133:21..3262- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACCGTCAAGCGTGGTCCCGGAACACCGCAAACGGGCTATCTGTGTCTG
GTCGAGCATCCTGCTGGCAGTCTTCCTTTGTAAGTGGGATGCATGCGTGC
GCATTGAGTTTCATGTGGTGCCCCAATGGTTGCGTTGCATGAAACAATAA
AGCCTGCAACCTCGTCTCAAGCCCATTTCCCTTGTTCGAGGCCCCATCGC
GAGAGAGTCGAGCTACCGTGGTCAACAGACACGACGGGTATCGTCGTCTA
GCCGATGATTCGTCATCATCCAAGATTCGCTGTTTGATACAGACGACAAG
GGCGAACAGATCCTCTTGCGCTCGGGATTTTTCCCTTTGGTGGTCTCGTG
TTTGCTGAGAGAGTGTTCAGCTTTCGTTCTTGTGTGGAGCTTCTAAAATA
AAGGCCAAGAGGAGACCTAGAGCAGTACTCCTCATGTACACCCGGCGAGC
GTGTGTGAGGAGTGGAAGCATAGATTTATCCCTACAGAAGAACCAGGCTC
AACTTTCCGAAGATTCAAAAGTTCAATGACATCCGGTTTGGTATCTCTGG
GAACGACAGGTTCGTTTCTCCAGCTCGAAACTCAAGTACGATGAACGAGG
AGGCTGAAACATTGGAACTCACGACTCTTACGCACGATCTTGATGGAGTT
ATTCCAGTCCTGGTGTCTCTTGGAAACCCTCGGCAAAGAACACAAACTAT
TCGCTAGCACATTATGTGCGGTACGGGCGAAACCTCTCGTCGCCCCAGAC
TGCGACTTCGGCGCGAACCTGTCCTATCCCTGCTGGAATGTCAACCCCAG
GACCATCTGAACATAACTCAAGTTTCGGCTAACTCTTTCTTTCGAATCTA
ATTGCTTTTCGGACGGATCATCGCAGACACGATATGGCAGGTCATTGTGT
TGATCAACCAGCAAGAGCATCCCAGCACGGCGTTCAACGTATCGGTAAGA
TGCGCATTTGCCGGATAGCTTGTACCTCGGGAAAAAAATGCGATAGCCTC
CACCGTATCCGTCAACAGGTCTTGTCCTGTATCGTCAAAACCTTTACGCG
GATGCTATCTTTCTTTCAAAACTCCTCCTCCTCGAACGTTAGTTTTGAGT
ACCCGCCTGCGTGGGCGGTACCCGCGGTGGCACACACGCATACGGCGCGC
TCGTGATGTCTTGTGTTTCTCATTGTGTAAGGAACGTCCACCTTCGTTTC
CGGTACAGTTGTCCGTGGTGCCACCTCTTTTCGGCTTGCTGCCGGCCAGA
ACGACAGGTTCGCGTTTCCCTATGTGTCGGTGTGCCTGGAGGACGGGTTC
GGCTGCTATCACCCAGACGGGTCCACGGAGGATTGCGTCCAGTCTGCGAT
ACAGTACTCCGATGCCGAGTATGAGGGCGAAACGATCGAAGCCATCGCTG
ACGAACAGGTCGGGGGGGGTTCTGTGTGCTCTTGCACACGCTTATTGTCA
GGGGGCGTTGAACTCCAACCTTGGCCGTGACTGCAACGAAAAGAAGTCCG
TGATCACTCTTGAAGTCGTTGGCAATGCGCGTAAGAACACACCGAAACGA
GCATGCACGCAAGAACACAACAGAACAACGCATTTGTGGCCCTTTCCGAT
AAACGGGTGCACCGCACAATCAAGGCATGCGCCCTGGCCTTACCAACGAA
CGTCAACTCTTCGCCATAACCCCCCTGCTTCCCTAACCCCCGTGCTGCGC
CCCCCCTTTCCGCCCCAGTACCCAAACTGTGTGGGATTCGACCTGTCCCA
GTTCGAAGTGCCCGAAGGTGAACGAGAGGGGCCGCAGCAGTCGGTACTGC
TTGTGGTAAGTCCGGGAGTCTGTTGCGGTGGCGTGGAAGGTTGACTGCCA
AGCATCGCCGATGGATTTCAGGATCAAAGGAACATGATTGCCTAGTTTCG
AATGCAACCGCCAGACCGACTTGCGGAGTCCGTCACGTTAGAGTCGTTGT
GTAACTTCCCGTTGGCCTTCCACGCTGCTCACATCGGGCGGGGGTAGCTC
GACTGTGCCCGGGACAAAGTCCCTGCGGTTCTCGACGCGTTTGTTTCATC
GTGTACTCTAGATCTTCTAGGAGCAGCACAAGATTCGGTGACCCATAACG
CGAATAGTTCTACGCATGTAGCTCCGATGTATCAACAGTTAGTTGTGGGT
TGCTTTCGTACCAAGCGCGAATACCATAGGTACTGCCTTCCTCCTGGAGT
CATCTAGTCCGCTTGGGCTGTGCATGCGAAGAACCCAAACTCCCAGCACG
TCGCTTCGCTCCGTTCCGATGACAATCACCCTTGTGCGTTCTTTCGACCG
CCGAACCGAGGGGGGTGAAGATGTACTGGACTGCGAGCGAGGACCCTACC
GCCGAGACAGAATACAGGTGAGAGAGAAAGTCCATAGAGGATGCCTGAAA
AGCTGCTCACAGATGATCCCCGGCCGACCTGAGTTTCGGGGACGTCCGGC
ACTACACAGGCGGATGCCCGCAGACACAAACAGTTTGTCGGGAGAACCCC
GCCTTCTTTTCTTTACCACTGGGGACAATGCCATGGACACTGCTGGTGGC
GCGCTCACAGCGTCACTGCCGAGAAGGAGTTGGCAGAGGAAGTCCCGAGA
AGAAGAAGAAGAGGAAGAAGAAGCATGGTAGTCCAACACCTCCCACACAT
TGCCCCACGCATCCCAAGAGTTGATACCACCCAGCGTGCTGTACCGCATC
ACGAGGTGTGTGTGATTGCCTGATGCCCTCGCCAATTGGACCCTTCCCCG
CAGCGAATCGGTCGAGGTCGTTCTAGGGGGACCCGATGACAACGAGGAGA
TTACGACGGTGCCCTACAGTCGTAACCTGGAATCGTCGACCGAGGAGATA
TACGCCATTTCCGCCATGGTGAGGCGTTTTCGACTTTGGGTCCAGGCTAG
GAAGGGCATGTCGCCTCCGCTGCTCAACTGACCGGAAAATGTTGGCGGCT
CGGATGTGTTGAGCCTTGAGATCGGCACCCTGTGCAACACCTCATCGGCC
TTGTGAGGGTCTGAACGTAAGGATAGCAGCGTCTGTCTCTCTTTTTGGCC
TGACGAATCCTGGCCATTTGTGTATGGCAAGGCTCTACCCTCTCCGCGCT
GATCCCCGCACTTGGTGCTGCTCTCCAGACGATTGGCAAGACTCACCGAA
CTTTCCTAGACAAAGATCCCGTCACCAGCTACCCTGCGCTGACGGTTTCG
ACCACGAAGTACGTCGTGCCGGAGGTGAGCTCCCTCTCGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13133:21..3262-

>mRNA_Ecto-sp13_S_contig13133.2549.1 ID=mRNA_Ecto-sp13_S_contig13133.2549.1|Name=mRNA_Ecto-sp13_S_contig13133.2549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13133:21..3262- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACCGTCAAGCGTGGTCCCGGAACACCGCAAACGGGCTATCTGTGTCTG
GTCGAGCATCCTGCTGGCAGTCTTCCTTTACACGATATGGCAGGTCATTG
TGTTGATCAACCAGCAAGAGCATCCCAGCACGGCGTTCAACGTATCGAAC
GACAGGTTCGCGTTTCCCTATGTGTCGGTGTGCCTGGAGGACGGGTTCGG
CTGCTATCACCCAGACGGGTCCACGGAGGATTGCGTCCAGTCTGCGATAC
AGTACTCCGATGCCGAGTATGAGGGCGAAACGATCGAAGCCATCGCTGAC
GAACAGTACCCAAACTGTGTGGGATTCGACCTGTCCCAGTTCGAAGTGCC
CGAAGGTGAACGAGAGGGGCCGCAGCAGTCGGTACTGCTTGTGATGTACT
GGACTGCGAGCGAGGACCCTACCGCCGAGACAGAATACAGCGAATCGGTC
GAGGTCGTTCTAGGGGGACCCGATGACAACGAGGAGATTACGACGGTGCC
CTACAGTCGTAACCTGGAATCGTCGACCGAGGAGATATACGCCATTTCCG
CCATGACGATTGGCAAGACTCACCGAACTTTCCTAGACAAAGATCCCGTC
ACCAGCTACCCTGCGCTGACGGTTTCGACCACGAAGTACGTCGTGCCGGA
GGTGAGCTCCCTCTCGGAA
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