mRNA_Ecto-sp13_S_contig13107.2535.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13107.2535.1
Unique NamemRNA_Ecto-sp13_S_contig13107.2535.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 3.450e-47
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
Query:   13 GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ
Sbjct:   93 GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 174          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.130e-31
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    4 LNA--GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVY 255
            LNA  GV+AV+ DALDLKGVE  LDGCDAAITTLGG+       RVDY GNRNVIESAGILG+TRV++VTSVGCG SR AISDQVY
Sbjct:   80 LNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGS---SGENRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVY 162          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A6U3NUE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUE1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.850e-26
Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   13 GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            GV+A++ DA + K VE  +DGCDAAITTLG    G++ KRVDY GN NVIE+AGILG+TRV+++TS+GCGSS+EA    V++
Sbjct:   96 GVTAILGDAFEYKNVEGAMDGCDAAITTLGQGTAGEDGKRVDYEGNSNVIEAAGILGVTRVILITSIGCGSSKEAAPPSVFE 177          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A1Z5JK00_FISSO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JK00_FISSO)

HSP 1 Score: 106 bits (264), Expect = 2.670e-26
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 LLNA--GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            LLNA  G +A+V DA D K VE  +DGCDAAITTLGG+   D+ +R+DY GN NVIESAGILG+TRV++VTS+GCGSS+EA    V++
Sbjct:   75 LLNALEGCTAIVGDAFDQKTVENAMDGCDAAITTLGGSTA-DQGQRIDYDGNNNVIESAGILGVTRVILVTSIGCGSSKEAAPPNVFE 161          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.400e-26
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 1
Query:   13 GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            GV+A+V DA D K VE  +DGCDAAITTLGG+ + D   R+DYAGN NVIESAGILG+ R+++VTSVGCGSS+EA  + V++
Sbjct:   84 GVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQ-DTGARIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFE 164          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC)

HSP 1 Score: 105 bits (261), Expect = 8.230e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    4 LNA--GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            LNA  GV+A+  DA + K VE  +DGCDAAITTLGGA   D  KRVDY GN NVIESAGILG+TRV++VTSVGCGSS+EA    V++
Sbjct:   83 LNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATS-DGGKRVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFE 168          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.490e-25
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    4 LNA--GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            LNA  GV+AV+ DA D K VE  +DGCDAA++TLGG    +  +RVDY GN NVIE+AGILG+TRVV++TS+GCGSS+EA    V++
Sbjct:   93 LNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFE 179          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A7S3DY81_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DY81_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.310e-25
Identity = 51/87 (58.62%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    7 NAGVSAVVCDALDLKGVEAVLDGCDAAITTLGGA---PEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            +A ++A+V DA+D K VE  +DGCDAAITTLGG    P+G  ++RVDY GN NVIESAGILG+ R+++VT++GCG+S+EA  DQ Y+
Sbjct:   97 DAPITAIVGDAMDQKTVENAMDGCDAAITTLGGTTTLPDGT-NERVDYTGNSNVIESAGILGVVRIILVTTIGCGNSKEATPDQTYE 182          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.110e-25
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   13 GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            GV+A++ DAL  K VE  +DGCDAA+TTLG AP  ++  +VDY GN NVIE+AGILG+TR ++VTSVGCG S+EA+S   Y+
Sbjct:  110 GVTAILGDALVQKDVEGAMDGCDAAVTTLGSAPTDEQRWKVDYDGNVNVIEAAGILGVTRCILVTSVGCGDSKEAVSPDAYE 191          
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Match: A0A1Z5KS36_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS36_FISSO)

HSP 1 Score: 106 bits (264), Expect = 7.820e-25
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 LLNA--GVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ 258
            LLNA  G +A+V DA D K VE  +DGCDAAITTLGG+   D+ +R+DY GN NVIESAGILG+TRV++VTS+GCGSS+EA    V++
Sbjct: 1141 LLNALEGCTAIVGDAFDQKTVENAMDGCDAAITTLGGSTA-DQGQRIDYDGNNNVIESAGILGVTRVILVTSIGCGSSKEAAPPNVFE 1227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13107.2535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ06_ECTSI3.450e-47100.00Epimerase/dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
A0A835Z825_9STRA1.130e-3175.58Epimerase/dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
A0A6U3NUE1_9STRA1.850e-2659.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JK00_FISSO2.670e-2662.50NAD(P)-bd_dom domain-containing protein n=1 Tax=Fi... [more]
A0A7S3L6R6_9STRA5.400e-2663.41Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7FVE3_PHATC8.230e-2665.52Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2UDM5_9STRA1.490e-2559.77Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3DY81_9STRA4.310e-2558.62Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2V5P0_9STRA5.110e-2559.76Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1Z5KS36_FISSO7.820e-2562.50Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13107contigEcto-sp13_S_contig13107:1053..1310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score161.0
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog2880.D7FJ06
Model size258
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Ec32 ortholog descriptionepimerase/dehydrogenase
Ec32 orthologEc-07_004910.2
Cds size258
COG Functional cat.GM
BiGG ReactioniRC1080.CRv4_Au5_s6_g13409_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462702.0447824-CDS-Ecto-sp13_S_contig13107:1052..13101681462702.0447824-CDS-Ecto-sp13_S_contig13107:1052..1310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13107 1053..1310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13107.2535.1prot_Ecto-sp13_S_contig13107.2535.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13107 1053..1310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13107.2535.1

>prot_Ecto-sp13_S_contig13107.2535.1 ID=prot_Ecto-sp13_S_contig13107.2535.1|Name=mRNA_Ecto-sp13_S_contig13107.2535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
LLNAGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGN
RNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQ
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mRNA from alignment at Ecto-sp13_S_contig13107:1053..1310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13107.2535.1 ID=mRNA_Ecto-sp13_S_contig13107.2535.1|Name=mRNA_Ecto-sp13_S_contig13107.2535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13107:1053..1310+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACTCAATGCAGGCGTTTCTGCGGTGGTCTGTGACGCGTTGGACCTGAA GGGGGTTGAAGCGGTTTTGGACGGCTGCGACGCTGCAATCACTACCCTTG GAGGAGCCCCTGAAGGCGACGAGAGTAAACGGGTAGACTATGCGGGGAAC AGAAACGTGATCGAATCTGCGGGCATTCTCGGCATTACTCGGGTCGTGAT GGTGACGAGCGTTGGGTGCGGCAGCAGCCGTGAGGCAATTAGTGACCAAG TTTACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13107:1053..1310+

>mRNA_Ecto-sp13_S_contig13107.2535.1 ID=mRNA_Ecto-sp13_S_contig13107.2535.1|Name=mRNA_Ecto-sp13_S_contig13107.2535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13107:1053..1310+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACTCAATGCAGGCGTTTCTGCGGTGGTCTGTGACGCGTTGGACCTGAA
GGGGGTTGAAGCGGTTTTGGACGGCTGCGACGCTGCAATCACTACCCTTG
GAGGAGCCCCTGAAGGCGACGAGAGTAAACGGGTAGACTATGCGGGGAAC
AGAAACGTGATCGAATCTGCGGGCATTCTCGGCATTACTCGGGTCGTGAT
GGTGACGAGCGTTGGGTGCGGCAGCAGCCGTGAGGCAATTAGTGACCAAG
TTTACCAG
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