mRNA_Ecto-sp13_S_contig10228.253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10228.253.1
Unique NamemRNA_Ecto-sp13_S_contig10228.253.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10228.253.1 vs. uniprot
Match: D7G1P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P3_ECTSI)

HSP 1 Score: 497 bits (1279), Expect = 3.520e-171
Identity = 301/391 (76.98%), Postives = 318/391 (81.33%), Query Frame = 3 
Query:   51 ISFWSQRFTAERRQDQEHISGLVQDANAVEAALLKEQQPLQGRNKSLARDDPCAAASRGDNASSEGGGDAGGAVNTGGVEGSVGVRRIFSTKSNAYMEPAEPKDDSNFISLDQMRFMKYVYSHIEGRKGAKAHTRRMTNVVREEKQLAVKPDAHEQXXXXXXXXXXXXXXXRMFAANDAGSRRAGPVAGSSAAPLLGKGGEGGRNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSTNAYVAG-NGRRRGGDRSSRQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPHTSSLIKKSSAMLPSSSTGRKAELPMPPAVPPDNGTSAFLARGGRWGGESRRRSWRRDSVITASSASYATYCKRDRVQDRELGISRRHAAVPALPV 1220
            +++  +RFTAERRQDQ HISGLVQDANAVEAALLKEQQPLQGRN S  RDDPCAAASRGDNASS+GGGDAGGAVNTGGVEGSVGVRRIFSTKSNAY+E AEPKDDS FISLDQMRFMKYVYSHI+G+K AKAHTR MT+VVREEKQ+A +P+AHEQXXXXXXXXXXXXXX RMFA+N AGSRRAGPVAGSS  P++ K GEGG NSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSS NA VA  NGRRRGGD +SRQS                            S P  S L   S AMLPSS+T   A LPMPP VPPDN TSAFLARGGRWGGESRR SWR DSV TASSASYATYCKRDR Q R LGISRR  AVPALPV
Sbjct:   43 LAYLQKRFTAERRQDQAHISGLVQDANAVEAALLKEQQPLQGRN-SQGRDDPCAAASRGDNASSQGGGDAGGAVNTGGVEGSVGVRRIFSTKSNAYVETAEPKDDSKFISLDQMRFMKYVYSHIDGQKAAKAHTRLMTDVVREEKQMAARPNAHEQXXXXXXXXXXXXXXKRMFASNGAGSRRAGPVAGSSVPPVISKAGEGGCNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSANANVAAENGRRRGGDHNSRQSRPSHASVSTSSSLFTPKGEKSGRNTRSGSCPDISGLTNNSPAMLPSSATRPTAALPMPPTVPPDNVTSAFLARGGRWGGESRRGSWRCDSVTTASSASYATYCKRDRDQGRVLGISRRPPAVPALPV 432
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BLAST of mRNA_Ecto-sp13_S_contig10228.253.1 vs. uniprot
Match: A0A6H5L4T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T8_9PHAE)

HSP 1 Score: 489 bits (1258), Expect = 5.770e-168
Identity = 300/393 (76.34%), Postives = 314/393 (79.90%), Query Frame = 3 
Query:   51 ISFWSQRFTAERRQDQEHISGLVQDANAVEAALLKEQQPLQGRNKSLARDDPCAAASRGDNASSEGGGDAGGA---VNTGGVEGSVGVRRIFSTKSNAYMEPAEPKDDSNFISLDQMRFMKYVYSHIEGRKGAKAHTRRMTNVVREEKQLAVKPDAHEQXXXXXXXXXXXXXXXRMFAANDAGSRRAGPVAGSSAAPLLGKGGEGGRNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSTNAYVAGNGRRRGGDRSSRQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPHTSSLIKKSSAMLPSSSTGRKAELPMPPAVPPDNGTSAFLARGGRWGGESRRRSWRRDSVITASSASYATYCKRDRVQDRELGISRRHAAVPALPV 1220
            +++  +RF AERRQDQ HIS LVQDANAVEAALLKEQQPLQG N SLARDDPCAAASR  NA SEGGGDAGGA   V+TGGVEGSVGVRRI STKSNAYMEPA+PKDDSNFISLDQMRFMKY+YSHIEG+ GAKAHTR  TNVVREEKQ+AVKP+AH+Q XXXXXXXXXXXXXX            AGPVAGSSA PLL KGGEGGRNSGSRERQLLERKRGILLEMKGVV+RQAEALDRLVQSS NA VAGNGRRRGGDR+SR+S                            S PH SS IKKS AMLPS  T  KAELPMPP VP DNGTSAFLARGGRWGGESRRRSWRRDSV TASSASYATYCKRDR Q   LGI RR AAVPALPV
Sbjct:   43 LAYLQKRFIAERRQDQAHISELVQDANAVEAALLKEQQPLQGGNTSLARDDPCAAASRAYNAPSEGGGDAGGAAGAVDTGGVEGSVGVRRILSTKSNAYMEPADPKDDSNFISLDQMRFMKYMYSHIEGQNGAKAHTRLTTNVVREEKQIAVKPNAHKQRXXXXXXXXXXXXXXXXXXXXXXXXXXAGPVAGSSAPPLLSKGGEGGRNSGSRERQLLERKRGILLEMKGVVNRQAEALDRLVQSSANANVAGNGRRRGGDRNSRKSRPSQASVSTSSSLFTPNGATSGQNTRSGSCPHISSHIKKSPAMLPSPLTRPKAELPMPPTVPQDNGTSAFLARGGRWGGESRRRSWRRDSVTTASSASYATYCKRDRDQGM-LGIGRRPAAVPALPV 434
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10228.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1P3_ECTSI3.520e-17176.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4T8_9PHAE5.770e-16876.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10228contigEcto-sp13_S_contig10228:3135..5773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1410
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000500.1
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.9693801-UTR-Ecto-sp13_S_contig10228:3134..33211681462516.9693801-UTR-Ecto-sp13_S_contig10228:3134..3321Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10228 3135..3321 -
1681462517.00618-UTR-Ecto-sp13_S_contig10228:4502..47701681462517.00618-UTR-Ecto-sp13_S_contig10228:4502..4770Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10228 4503..4770 -
1681462517.0203598-UTR-Ecto-sp13_S_contig10228:5703..57731681462517.0203598-UTR-Ecto-sp13_S_contig10228:5703..5773Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10228 5704..5773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.982303-CDS-Ecto-sp13_S_contig10228:3321..41551681462516.982303-CDS-Ecto-sp13_S_contig10228:3321..4155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10228 3322..4155 -
1681462516.9915497-CDS-Ecto-sp13_S_contig10228:4451..45021681462516.9915497-CDS-Ecto-sp13_S_contig10228:4451..4502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10228 4452..4502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10228.253.1prot_Ecto-sp13_S_contig10228.253.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10228 3322..4502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10228.253.1

>prot_Ecto-sp13_S_contig10228.253.1 ID=prot_Ecto-sp13_S_contig10228.253.1|Name=mRNA_Ecto-sp13_S_contig10228.253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MEPAEPKDDSNFISLDQMRFMKYVYSHIEGRKGAKAHTRRMTNVVREEKQ
LAVKPDAHEQRRRRRSSSSSSGGDKRMFAANDAGSRRAGPVAGSSAAPLL
GKGGEGGRNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSTNAY
VAGNGRRRGGDRSSRQSRSSQASVSTSSSLFTPKGATSGRNTRSGSYPHT
SSLIKKSSAMLPSSSTGRKAELPMPPAVPPDNGTSAFLARGGRWGGESRR
RSWRRDSVITASSASYATYCKRDRVQDRELGISRRHAAVPALPV*
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mRNA from alignment at Ecto-sp13_S_contig10228:3135..5773-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10228.253.1 ID=mRNA_Ecto-sp13_S_contig10228.253.1|Name=mRNA_Ecto-sp13_S_contig10228.253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10228:3135..5773- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTTCTTCTTCCTCAGAAGCGAGCAGATCGTCAATCGGCGCCATATAG
ATCTCGTTCTGGTCCCAAAGGTGTGCTTAGTAGGCTTCCCGGACAACAAG
TTTTGGGGCCCCTGTATCGCGCGGCGCAACTTTGGCCGATACATACATCC
TTTTTTTCCCTCCTGGGGACGAAGGGAAAAATGTCGCCCGCATCGCTCGC
TCCGCTCGCTCCGCGTCTCATTATAACCTCGAGATCATCTCGCAACACCT
CGGGGCCTTCGTGTACAACTTGTTTTGGTGGAGGAACATAAGCTAGACAG
CAGGGTTTGATGACATGGGGCGTACTTCTTTGAGTTAAAACGACTTCGAA
TGTACGAAATCGTGGCCAACTTCCACCGGTTCCGGGGAGGAAATTTGTGC
AATACGTGTGTGAACCAAGGATGTACGTTACCGGTATACCGGTAATTTAC
CGGTTAAGGGTTGGGGTCGGTAAAGTAAAAATTTGCGGTAGTTCTCGACA
GTCTCGTGCTACCCCCCGCCCTCCTCATTAGCGGGCCCCCCTCAGCCTCT
GCCTTGCGAAGGGAAAAACGACAAAACAGCTGCTGCACAGCTTCCGCACT
CACCACATTGAGTCCCTCCCGAGGTCAGAGCATAGCTTATCTACAGCAGA
CCACCGCCACATAGGCACTGGAAGACGACAATGAATTCTTGGGGCTCGCT
TTCGAGCACCCCCGTGACAGTGATAGAGGAAAGTGTTGAAGACCACCAAC
CCCTTCTTGCGTTCGTAGACGTCTGGAAAACCCGGGGACAGTCGTTTTCC
ATCCACGCTTTCCGCGGTAATAACCGGTCGGTAACACCGATTGCTGGTTT
GCGGTAAATTACCGGTCGGTAAAGGGGTCTGACCTGGGAAACGTACATCC
CTGGTGTAAACTGCAGGAGCAATTACGCATCGAAAACTTGTTTAGTCCTC
ACCATATGTGGAACGATTATTCACATGCCAACTTTCAATTCGTCTGGCAC
CAGGTTCACCGCGGAGAGACGGCAAGATCAGGAACACATCTCCGGGCTCG
TGCAAGACGCGAATGCCGTGGAAGCCGCCCTCCTGAAGGAGCAGCAACCA
TTGCAAGGGCGCAACAAAAGCCTGGCCCGTGATGATCCTTGCGCAGCGGC
TTCCAGAGGCGATAATGCTTCTTCCGAAGGCGGCGGCGATGCCGGTGGTG
CTGTTAACACTGGTGGGGTGGAGGGTTCCGTGGGGGTCAGAAGAATCTTC
TCGACCAAGTCGAATGCCTACATGGAGCCGGCAGAGCCGAAAGACGACTC
AAACTTTATCTCTCTCGATCAGGTAATTTTCTCAAGTGGAACAAAGCTGG
CTCTACGGAGTGCATGCCGTTTGCTTTCTTCTGTTTATCGGGATAACATC
CTTGTTTTGTCTGTGTGGGACTGTGTGGGCAGGAATAAAGTTCCCAACTC
TCCGAGATCAAGCAGGCATGGATTTGCCTAGGTGGTGGATATTTCTTGTC
TATCCATGTCACAAGACATTGCTACTTCGGCGACGTCTGACTGGTTGCGG
ACACCAAGGCATCGTATTTAATCCTCGTTGCTTCACGTTGCTGCCGCACT
CCTTCCTGTTCCACTCAGATGCGTTTCATGAAATACGTGTACTCACACAT
CGAGGGACGAAAGGGGGCAAAGGCGCACACACGCCGCATGACCAACGTAG
TCCGCGAAGAAAAACAATTAGCGGTCAAGCCCGACGCACATGAACAGCGA
CGCCGCCGCCGAAGCAGCAGCAGTAGCAGCGGTGGGGACAAGAGGATGTT
CGCCGCCAACGACGCTGGCTCAAGGAGAGCGGGACCTGTAGCGGGGTCGA
GTGCTGCACCGCTGCTGGGCAAGGGCGGGGAAGGCGGTCGCAACTCCGGC
AGCAGAGAGCGGCAGCTTTTGGAGCGAAAGCGAGGGATTCTGCTGGAGAT
GAAGGGGGTCGTAAGCCGGCAAGCGGAGGCGCTAGACCGACTTGTCCAAA
GCAGCACCAACGCTTACGTAGCGGGAAATGGGCGAAGGAGAGGTGGTGAC
CGCAGCAGCAGACAAAGCCGGTCTTCCCAAGCAAGTGTCTCGACTTCAAG
CAGTCTGTTTACCCCCAAGGGAGCAACGAGTGGCCGAAACACCAGGAGCG
GGTCATACCCACATACCTCCAGCCTTATCAAAAAGTCTTCGGCCATGCTA
CCCTCTTCTTCGACAGGACGAAAAGCGGAGCTACCGATGCCTCCCGCGGT
GCCGCCAGACAACGGCACGTCTGCCTTTTTGGCCCGCGGGGGACGGTGGG
GTGGAGAGAGCCGGCGGCGGTCGTGGAGGCGCGATTCCGTCATAACAGCA
TCTTCGGCGTCGTACGCGACCTATTGCAAACGGGATCGTGTTCAGGATAG
GGAGCTCGGTATCAGCCGACGCCACGCGGCCGTCCCTGCGCTGCCGGTGT
AGGCTATTGGGGTGGAGCGCGGTAGGCGGCGTTCCGCGTTTCCGGTGCAC
CGTACCGCGTTCGCCAGCAACCGACGGAAGCGTATAGTTGACGGTTGTTG
TTGTTTTTGTTTTGGTTCTTCTGTAATCGAACCTTCGTGGTCTTGTTGTC
AAAGCGTTTTCTCCCTGTCCTTCCTCCAGTTAAGCCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10228:3135..5773-

>mRNA_Ecto-sp13_S_contig10228.253.1 ID=mRNA_Ecto-sp13_S_contig10228.253.1|Name=mRNA_Ecto-sp13_S_contig10228.253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10228:3135..5773- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCGGCAGAGCCGAAAGACGACTCAAACTTTATCTCTCTCGATCA
GATGCGTTTCATGAAATACGTGTACTCACACATCGAGGGACGAAAGGGGG
CAAAGGCGCACACACGCCGCATGACCAACGTAGTCCGCGAAGAAAAACAA
TTAGCGGTCAAGCCCGACGCACATGAACAGCGACGCCGCCGCCGAAGCAG
CAGCAGTAGCAGCGGTGGGGACAAGAGGATGTTCGCCGCCAACGACGCTG
GCTCAAGGAGAGCGGGACCTGTAGCGGGGTCGAGTGCTGCACCGCTGCTG
GGCAAGGGCGGGGAAGGCGGTCGCAACTCCGGCAGCAGAGAGCGGCAGCT
TTTGGAGCGAAAGCGAGGGATTCTGCTGGAGATGAAGGGGGTCGTAAGCC
GGCAAGCGGAGGCGCTAGACCGACTTGTCCAAAGCAGCACCAACGCTTAC
GTAGCGGGAAATGGGCGAAGGAGAGGTGGTGACCGCAGCAGCAGACAAAG
CCGGTCTTCCCAAGCAAGTGTCTCGACTTCAAGCAGTCTGTTTACCCCCA
AGGGAGCAACGAGTGGCCGAAACACCAGGAGCGGGTCATACCCACATACC
TCCAGCCTTATCAAAAAGTCTTCGGCCATGCTACCCTCTTCTTCGACAGG
ACGAAAAGCGGAGCTACCGATGCCTCCCGCGGTGCCGCCAGACAACGGCA
CGTCTGCCTTTTTGGCCCGCGGGGGACGGTGGGGTGGAGAGAGCCGGCGG
CGGTCGTGGAGGCGCGATTCCGTCATAACAGCATCTTCGGCGTCGTACGC
GACCTATTGCAAACGGGATCGTGTTCAGGATAGGGAGCTCGGTATCAGCC
GACGCCACGCGGCCGTCCCTGCGCTGCCGGTGTAG
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