mRNA_Ecto-sp13_S_contig1307.2513.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A6H5J8A4_9PHAE (AAA_12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE) HSP 1 Score: 270 bits (690), Expect = 7.230e-84 Identity = 154/199 (77.39%), Postives = 157/199 (78.89%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRG----------------------SGVVRVGVITPYRGQVHCIQQELSGGGGGRRLKGGV---------STVDGFQGKEVDVVLFSCVRAPSYGGGXXXG---IGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKSCERL 495
PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASG+RSGRG SGVVRVG+ITPYRGQVHCIQQELSGGGGGRRLKGGV STVDGFQGKEVDVVLFSCVRAPS G XXX IGFLADQRRMNVALTRAR SLI+LGNVGRLSSD TW ALVDHSKS ERL
Sbjct: 54 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXXXRDREKSGVVRVGIITPYRGQVHCIQQELSGGGGGRRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXXXXXIGFLADQRRMNVALTRARCSLIILGNVGRLSSDATWNALVDHSKSRERL 252
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI) HSP 1 Score: 264 bits (674), Expect = 4.740e-79 Identity = 152/198 (76.77%), Postives = 155/198 (78.28%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRG---------------------SGVVRVGVITPYRGQVHCIQQELSGGGGGR---RLKGGV---------STVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKSCERL 495
PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASG+RSGRG SGVVRVGVITPYRGQVHCIQQELSG RLKGGV STVDGFQGKEVDVVLFSCVRAPS G XXX IGFLADQRRMNVALTRARRSL+VLGNVGRLSSDGTWKALVDHSKS +RL
Sbjct: 530 PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXGQDREKSGVVRVGVITPYRGQVHCIQQELSGXXXXXXXXRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXXXIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDGTWKALVDHSKSRDRL 727
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A2P6VIA2_9CHLO (ATP-dependent helicase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIA2_9CHLO) HSP 1 Score: 124 bits (312), Expect = 5.720e-30 Identity = 80/168 (47.62%), Postives = 98/168 (58.33%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERR--AGSSYQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELSGGGGGRRL-KGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKSCERL 495
PCFPP D G ER AGSS N EA A A L A R G V V V+TPY+ Q+ +++ GGG L + +TVDGFQG+E DVV+FSCVRA + GGG +GFLAD RRMNVALTRARRSL ++G+ L+S W L+ H + RL
Sbjct: 2386 PCFPPLAFWDCKEGRERGGGAGSSVSNAEEAEVAYALWAGLAA---HFSRDMGDV-VAVLTPYKAQLGLLRRTFQQRGGGAALDRVQFATVDGFQGREADVVIFSCVRAHAAGGGG--SVGFLADVRRMNVALTRARRSLWIVGHHDTLASCQPWLELMQHCRRQRRL 2547
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A7S1AKL9_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AKL9_NOCSC) HSP 1 Score: 117 bits (292), Expect = 7.250e-30 Identity = 71/157 (45.22%), Postives = 94/157 (59.87%), Query Frame = 1
Query: 7 FPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRGSGVVR-VGVITPYRGQVHCIQQELSGGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDH 474
FPP L D+ S S +RA S++N E SA +A L + S VVR VG++TPYR Q ++QE GG V TVD +QG+E +V+LFS VRAP G GIGFLAD+RR NVALTRA+ LIV+G+ L+ + +W+A + H
Sbjct: 27 FPPLLFFDLQS-SAQRANGSWKNALEVRMCSAIIACLKEASTEE--ESDVVRDVGILTPYRAQQDALRQEFRGGYN-------VQTVDAYQGRECEVILFSTVRAPDVSG--CQGIGFLADERRFNVALTRAKSLLIVVGHAATLAQNTSWRAFLQH 171
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A7I8LI74_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LI74_SPIIN) HSP 1 Score: 122 bits (306), Expect = 3.520e-29 Identity = 74/169 (43.79%), Postives = 100/169 (59.17%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAG--SSYQNPREASFVSAF---LARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELS---GGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 483
P P+L D+S G E G +SYQN EA F A L R++ +G + +G V VG+ITPY+ Q+ C+Q+E G+ L ++TVD FQG+E DV++ SCVRA + G+GF+AD RRMNVALTRARR+L V+GN L W AL+ +KS
Sbjct: 1078 PLLKPYLFFDISHGRESHRGGSASYQNLHEARFCRAIYDHLHRVLKAGSAAAAATGRVSVGIITPYKLQLRCLQREFEPVISSEQGKDLY--INTVDAFQGQERDVIIMSCVRASGH------GVGFVADVRRMNVALTRARRALWVVGNANALVQSEDWAALIADAKS 1238
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A4D9A8N9_SALSN (Senataxin n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9A8N9_SALSN) HSP 1 Score: 122 bits (306), Expect = 3.530e-29 Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAGSS--YQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELS---GGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 483
P P++ D+S G E GSS YQN +EA F L S ++S G G V VG+ITPY+ Q+ C+Q+E G+ + ++TVD FQG+E DV++ SCVRA S+ G+GF+AD RRMNVALTRARR+L V+GN L W AL+D SK+
Sbjct: 1097 PLLRPYIFFDISHGRESHRGSSVSYQNTQEAQFCIRLYEHLQKS-VKS-LGIGKVSVGIITPYKLQLKCLQREFKDVLNSDEGKDIY--INTVDAFQGQERDVIIMSCVRASSH------GVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAALIDDSKA 1252
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A2K1IXN6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IXN6_PHYPA) HSP 1 Score: 122 bits (305), Expect = 4.660e-29 Identity = 76/166 (45.78%), Postives = 98/166 (59.04%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAGS-SYQNPREASFVSAFLARLVASGMRSGRGSGV---VRVGVITPYRGQVHCIQQELSGGGGGRRLKGGV--STVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSK 480
P P+L D+S G E AGS SYQN EA V+ L + + + G G V VG+ITPY+ Q+ C+++E G GV +TVD FQG+E DV++ SCVRA SY G+GF+AD RRMNVALTRARRSL V+GN L+ W AL+ +K
Sbjct: 684 PLLQPYLFFDISLGRESHAGSVSYQNKMEAQ-VAVHLYQHLQKTLADEAGGGPPANVSVGIITPYKQQLQCLEKEFVALIGSNAASNGVYINTVDAFQGQERDVIMMSCVRASSY------GVGFVADIRRMNVALTRARRSLWVIGNASALAQSEDWAALLADAK 842
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A7I4BMU9_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4BMU9_PHYPA) HSP 1 Score: 122 bits (305), Expect = 4.850e-29 Identity = 76/166 (45.78%), Postives = 98/166 (59.04%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAGS-SYQNPREASFVSAFLARLVASGMRSGRGSGV---VRVGVITPYRGQVHCIQQELSGGGGGRRLKGGV--STVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSK 480
P P+L D+S G E AGS SYQN EA V+ L + + + G G V VG+ITPY+ Q+ C+++E G GV +TVD FQG+E DV++ SCVRA SY G+GF+AD RRMNVALTRARRSL V+GN L+ W AL+ +K
Sbjct: 1225 PLLQPYLFFDISLGRESHAGSVSYQNKMEAQ-VAVHLYQHLQKTLADEAGGGPPANVSVGIITPYKQQLQCLEKEFVALIGSNAASNGVYINTVDAFQGQERDVIMMSCVRASSY------GVGFVADIRRMNVALTRARRSLWVIGNASALAQSEDWAALLADAK 1383
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: A0A4D9B9J8_SALSN (Senataxin n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9B9J8_SALSN) HSP 1 Score: 120 bits (301), Expect = 1.670e-28 Identity = 74/166 (44.58%), Postives = 99/166 (59.64%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAGSS--YQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELS---GGGGGRRLKGGVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 483
P P++ D+S G E GSS YQN +EA F L S ++S G G V VG+ITPY+ Q+ C+Q+E G+ + ++TVD FQG+E DV++ SCVRA S+ G+GF+AD RRMNVALTRARR+L V+GN L W L+D SK+
Sbjct: 1112 PLLRPYIFFDISHGRESHRGSSVSYQNTQEAQFCVRLYEHLQKS-IKS-LGIGKVSVGIITPYKLQLKCLQREFKDVLNSDEGKDIY--INTVDAFQGQERDVIIMSCVRASSH------GVGFVADIRRMNVALTRARRALWVMGNANALVQSDDWAELIDDSKA 1267
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Match: UPI00053C221B (uncharacterized ATP-dependent helicase C29A10.10c-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C221B) HSP 1 Score: 120 bits (300), Expect = 2.260e-28 Identity = 71/164 (43.29%), Postives = 99/164 (60.37%), Query Frame = 1
Query: 1 PCFPPFLLVDVSSGSERRAGSS--YQNPREASFVSAFLARLVASGMRSGRGSGVVRVGVITPYRGQVHCIQQELSGGGGGRRLKG-GVSTVDGFQGKEVDVVLFSCVRAPSYGGGXXXGIGFLADQRRMNVALTRARRSLIVLGNVGRLSSDGTWKALVDHSKS 483
P P+L D+S G E G S Y+N EA F L + ++S G+G V VG+ITPY+ Q+ C++QE G +K ++TVD FQG+E DV++ SCVRA S+ G+GF+AD RRMNVALTRARR+L ++GN L W AL++ ++S
Sbjct: 1076 PILRPYLFFDISHGRESHRGGSVSYENVDEARFCIGLYMHLQKT-LKS-MGAGKVSVGIITPYKLQLKCLRQEFGNALGQEEMKELYINTVDAFQGQERDVIIMSCVRASSH------GVGFVADIRRMNVALTRARRALWIMGNAAALVKSEDWGALINDARS 1231 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1307.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1307.2513.1 >prot_Ecto-sp13_S_contig1307.2513.1 ID=prot_Ecto-sp13_S_contig1307.2513.1|Name=mRNA_Ecto-sp13_S_contig1307.2513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp PCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGMRSGRGSback to top mRNA from alignment at Ecto-sp13_S_contig1307:15155..16226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1307.2513.1 ID=mRNA_Ecto-sp13_S_contig1307.2513.1|Name=mRNA_Ecto-sp13_S_contig1307.2513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1307:15155..16226- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1307:15155..16226- >mRNA_Ecto-sp13_S_contig1307.2513.1 ID=mRNA_Ecto-sp13_S_contig1307.2513.1|Name=mRNA_Ecto-sp13_S_contig1307.2513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1307:15155..16226- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |