mRNA_Ecto-sp13_S_contig13063.2509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13063.2509.1
Unique NamemRNA_Ecto-sp13_S_contig13063.2509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13063.2509.1 vs. uniprot
Match: A0A6H5JFN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN8_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 4.340e-60
Identity = 163/215 (75.81%), Postives = 163/215 (75.81%), Query Frame = 1 
Query:  127 GSCAAPPRGPSASGGRHDINEAFLGGRGATRAGTGASSSSHSSGGVHLLGGLGGGASGSGSRACPGALSLGAGGSVDGGVCDPGAGGXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXR------REELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAASRTTSGMGQAAAGGNERLAAAVSAPESSGPVTKRARRGGGVES 753
            GSC APPRGPSASGGRHDINEA LG RGATRAGTGASSSSHSSGGVH LGG GGGASGSGSRACPGA SLGAGGS  GGVC PGAGG         A     XXXXXXXXXXXXXXXXXXXX       REELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAASRTTSGMGQ                   G   KRARRGGGVES
Sbjct:  153 GSCVAPPRGPSASGGRHDINEAILGRRGATRAGTGASSSSHSSGGVHRLGGFGGGASGSGSRACPGAQSLGAGGSAVGGVCHPGAGGAGSVAGVMGAGVVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXREELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAASRTTSGMGQXXXXXXXXXXXXXXXXXXXGKQAKRARRGGGVES 367
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BLAST of mRNA_Ecto-sp13_S_contig13063.2509.1 vs. uniprot
Match: D8LKR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR7_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 7.950e-54
Identity = 260/362 (71.82%), Postives = 266/362 (73.48%), Query Frame = 1 
Query:    1 MQTGPPASTAPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSCAAPPRGPSASGGRHDINEAFLGGRGATRAGTGASSSSHSSGGVHLLGGLGGGASGSGSRACPGALSLGAGGSVDGGVCDPGAGGXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXR-------REELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAASRTTSGMGQAAAGGNERLAAAVSAPESSGPVTKRARRGGGVESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAASGGGAGAPAV----GAAAGAKVKAETKGAAGGDEGGGTD 1053
            MQTGPPAS AP       XXXXXXX                  SCA  PRGPSASG RHDINEA LG +GATRAGTGASSSS SSGGVH LGG GGGASGSGSRAC GA SL         VCD GA G         A XXXXXXXXXXXXXXXXXXXXXXXX        REELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAA RTTSGMGQA           V+APESSG  TKRARRGGGVESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+ ASG GAGAPA          +KVKAETK A GG++  GTD
Sbjct:    1 MQTGPPASAAPX------XXXXXXXTGASSSNRQGSSSAMVSASCA--PRGPSASGSRHDINEAILGRKGATRAGTGASSSSRSSGGVHRLGGFGGGASGSGSRACLGAQSLXXXXXXXXXVCDLGARGAGSDAGVVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAALRTTSGMGQAXXXXXXXXXXXVAAPESSGKETKRARRGGGVESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERKVASGRGAGAPAAVXXXXXXXXSKVKAETKRAGGGNDEAGTD 354
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13063.2509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFN8_9PHAE4.340e-6075.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKR7_ECTSI7.950e-5471.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13063contigEcto-sp13_S_contig13063:3290..4696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1065
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004520.1
Cds size1065
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.683581-CDS-Ecto-sp13_S_contig13063:3289..33961681462699.683581-CDS-Ecto-sp13_S_contig13063:3289..3396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13063 3290..3396 +
1681462699.6926389-CDS-Ecto-sp13_S_contig13063:3738..46961681462699.6926389-CDS-Ecto-sp13_S_contig13063:3738..4696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13063 3739..4696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13063.2509.1prot_Ecto-sp13_S_contig13063.2509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13063 3290..4696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13063.2509.1

>prot_Ecto-sp13_S_contig13063.2509.1 ID=prot_Ecto-sp13_S_contig13063.2509.1|Name=mRNA_Ecto-sp13_S_contig13063.2509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp
MQTGPPASTAPAPAAGAAGASSSNRQGSSSAMVSASSGSASAGSCAAPPR
GPSASGGRHDINEAFLGGRGATRAGTGASSSSHSSGGVHLLGGLGGGASG
SGSRACPGALSLGAGGSVDGGVCDPGAGGAGSGAGVEGAGGGGGTGQGQE
GGGGSGSGRSRTKRRREELSTESREPREDGLRRSARNVKDVQVRRSSRIK
ERDEKAAASRTTSGMGQAAAGGNERLAAAVSAPESSGPVTKRARRGGGVE
SGGRKRSAAAVAAAESSGPVTKRARRGGRVESGGRKRSAAAVAAAESSSP
VTKRARRGGRVEREAASGGGAGAPAVGAAAGAKVKAETKGAAGGDEGGGT
DQVL*
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mRNA from alignment at Ecto-sp13_S_contig13063:3290..4696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13063.2509.1 ID=mRNA_Ecto-sp13_S_contig13063.2509.1|Name=mRNA_Ecto-sp13_S_contig13063.2509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1407bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13063:3290..4696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGACGGGGCCGCCGGCAAGCACAGCGCCGGCGCCGGCGGCGGGTGC
GGCGGGAGCGTCAAGCTCAAACCGCCAAGGCTCATCATCGGCGATGGTGT
CCGCGTCGTTTGCACGACACGCATTGGGCGGCGGTTTTGGGCTCCGCGCA
TCGAATCAATCTGCGGCGAGGGCAGCGTCAGGATCATCGAGCTCCAGCAA
CTCCAGCTCCGCGGGTGGGTACGGCATCGGCGGTGCCAGCAGCAGCAGTG
CCAGCAGCATGGGGTGGGGTGGGTATGGCATGGACGGCGGTGCCAGCAGC
AGCGGTGGCGGCAGCCGCTTGTCCGGAGCAAGGGCGGCGTCCCGCGCGGG
CAGCAACAGCAGCAGCGGTGGCGGTAGCGCCTCGTACGCGCCGCCGGTTC
AGGGAGCGCGGATGCCGCCTGGGATGATGCCGATCGGAGCGACAGCGAGG
TCGGGGTCGGCGTCGGCGGGATCGTGCGCAGCACCACCGAGGGGGCCGTC
TGCATCTGGTGGCAGGCACGATATCAACGAAGCTTTCTTGGGGGGCAGGG
GAGCGACGAGGGCCGGGACAGGAGCCTCGAGCTCAAGCCACAGCTCCGGG
GGTGTACACCTCCTCGGCGGCCTCGGTGGCGGTGCCAGCGGAAGCGGTTC
ACGAGCGTGCCCCGGGGCACTGTCCCTAGGCGCTGGGGGGTCCGTGGATG
GAGGGGTGTGCGACCCGGGAGCAGGCGGTGCGGGGAGCGGCGCCGGCGTA
GAGGGGGCCGGAGGAGGAGGAGGGACGGGGCAGGGTCAGGAGGGAGGCGG
AGGATCAGGGTCAGGGAGGTCCAGGACCAAGCGCCGCAGGGAGGAGCTCT
CCACGGAGTCTCGCGAGCCGCGCGAGGACGGCCTTCGGCGCAGCGCGCGC
AATGTGAAGGATGTACAGGTGCGGAGGAGCTCGCGCATCAAGGAGAGGGA
CGAGAAGGCCGCCGCGTCGAGGACGACGAGCGGCATGGGGCAGGCGGCGG
CCGGAGGGAATGAGCGATTGGCAGCGGCGGTATCGGCGCCAGAGTCGTCC
GGCCCAGTGACGAAGAGGGCCCGCCGCGGCGGAGGGGTGGAGAGCGGAGG
GAGGAAGCGATCGGCAGCGGCGGTAGCGGCGGCAGAATCGTCCGGCCCAG
TGACGAAGAGGGCCCGCCGCGGCGGAAGGGTGGAGAGCGGAGGGAGAAAG
CGATCGGCAGCGGCGGTAGCGGCGGCAGAATCGTCCAGCCCAGTGACGAA
GAGGGCCCGCCGCGGCGGAAGGGTGGAGAGGGAGGCCGCTTCGGGAGGAG
GGGCGGGAGCGCCGGCGGTGGGGGCGGCGGCGGGGGCCAAGGTGAAGGCG
GAGACGAAGGGAGCCGCAGGCGGGGACGAGGGAGGGGGAACGGACCAGGT
ATTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13063:3290..4696+

>mRNA_Ecto-sp13_S_contig13063.2509.1 ID=mRNA_Ecto-sp13_S_contig13063.2509.1|Name=mRNA_Ecto-sp13_S_contig13063.2509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13063:3290..4696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGACGGGGCCGCCGGCAAGCACAGCGCCGGCGCCGGCGGCGGGTGC
GGCGGGAGCGTCAAGCTCAAACCGCCAAGGCTCATCATCGGCGATGGTGT
CCGCGTCGTCGGGGTCGGCGTCGGCGGGATCGTGCGCAGCACCACCGAGG
GGGCCGTCTGCATCTGGTGGCAGGCACGATATCAACGAAGCTTTCTTGGG
GGGCAGGGGAGCGACGAGGGCCGGGACAGGAGCCTCGAGCTCAAGCCACA
GCTCCGGGGGTGTACACCTCCTCGGCGGCCTCGGTGGCGGTGCCAGCGGA
AGCGGTTCACGAGCGTGCCCCGGGGCACTGTCCCTAGGCGCTGGGGGGTC
CGTGGATGGAGGGGTGTGCGACCCGGGAGCAGGCGGTGCGGGGAGCGGCG
CCGGCGTAGAGGGGGCCGGAGGAGGAGGAGGGACGGGGCAGGGTCAGGAG
GGAGGCGGAGGATCAGGGTCAGGGAGGTCCAGGACCAAGCGCCGCAGGGA
GGAGCTCTCCACGGAGTCTCGCGAGCCGCGCGAGGACGGCCTTCGGCGCA
GCGCGCGCAATGTGAAGGATGTACAGGTGCGGAGGAGCTCGCGCATCAAG
GAGAGGGACGAGAAGGCCGCCGCGTCGAGGACGACGAGCGGCATGGGGCA
GGCGGCGGCCGGAGGGAATGAGCGATTGGCAGCGGCGGTATCGGCGCCAG
AGTCGTCCGGCCCAGTGACGAAGAGGGCCCGCCGCGGCGGAGGGGTGGAG
AGCGGAGGGAGGAAGCGATCGGCAGCGGCGGTAGCGGCGGCAGAATCGTC
CGGCCCAGTGACGAAGAGGGCCCGCCGCGGCGGAAGGGTGGAGAGCGGAG
GGAGAAAGCGATCGGCAGCGGCGGTAGCGGCGGCAGAATCGTCCAGCCCA
GTGACGAAGAGGGCCCGCCGCGGCGGAAGGGTGGAGAGGGAGGCCGCTTC
GGGAGGAGGGGCGGGAGCGCCGGCGGTGGGGGCGGCGGCGGGGGCCAAGG
TGAAGGCGGAGACGAAGGGAGCCGCAGGCGGGGACGAGGGAGGGGGAACG
GACCAGGTATTGTAG
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