mRNA_Ecto-sp13_S_contig13062.2507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13062.2507.1
Unique NamemRNA_Ecto-sp13_S_contig13062.2507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.850e-46
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    4 IPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ 282
            IPFT+LSQ+LPFILVGIGVDDMFVIVAAYD+TDP LAVEERVALGVKRCGVS+TYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDF LQ
Sbjct:  344 IPFTSLSQILPFILVGIGVDDMFVIVAAYDHTDPSLAVEERVALGVKRCGVSVTYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFFLQ 436
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 6.680e-46
Identity = 84/93 (90.32%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    4 IPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ 282
            IPFT+LSQ+LPFIL+GIGVDDMFVIVAAYD+TDP LAVEER+ALGVKRCGVS+TYTSLTNFFAFLLGS+TSLPAVEYFCLYAATAILFDF LQ
Sbjct:  372 IPFTSLSQILPFILIGIGVDDMFVIVAAYDHTDPSLAVEERIALGVKRCGVSVTYTSLTNFFAFLLGSMTSLPAVEYFCLYAATAILFDFFLQ 464
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 8.710e-44
Identity = 80/93 (86.02%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    4 IPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ 282
            IPFT LS++LPFIL+GIGVDDMFVIVAAYD+TDP LAVEER+ALGVKRCGVS+TYTSLTNFFAF+LGS++SLPAVEYFCLYA TAILFDF LQ
Sbjct:  321 IPFTPLSRILPFILIGIGVDDMFVIVAAYDHTDPSLAVEERIALGVKRCGVSVTYTSLTNFFAFMLGSMSSLPAVEYFCLYAGTAILFDFFLQ 413
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.000e-42
Identity = 79/94 (84.04%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 GIPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ 282
            G+PFT+LSQ+LPFIL+GIGVDDMFVIVAAYD+TD  L VEERVALGVKRCG+S+TYTSLTNFFAFLLG+ +SLPAV+YFCLYAATAILFDF LQ
Sbjct:  223 GVPFTSLSQILPFILIGIGVDDMFVIVAAYDHTDRALPVEERVALGVKRCGLSVTYTSLTNFFAFLLGAQSSLPAVQYFCLYAATAILFDFFLQ 316
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: D8LCK9_ECTSI (Similar to Patched domain-containing protein 3, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 8.370e-28
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 GIPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYF 237
            G+PFTTLSQ+LPFILVGIGVDDM VIV+++D+TDP L VE R+A  +KRCGVSITYTS+TN  AF+LGS TSLPAV  F
Sbjct:  336 GVPFTTLSQVLPFILVGIGVDDMIVIVSSFDHTDPALPVERRIADALKRCGVSITYTSMTNVAAFMLGSTTSLPAVTAF 414
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: A0A835YJJ3_9STRA (Patched family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.450e-27
Identity = 51/94 (54.26%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 GIPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ 282
            G+PFT+L Q+LPF+L+GIG+DD F++  A D  +P L   ER+A  + RCG+S+ YTS+ NF  F+LG+ ++LPA+EYFC+YA  A+LFDF+LQ
Sbjct:  365 GVPFTSLQQVLPFLLIGIGLDDAFIMAGALDLVNPDLPTAERIAEAMGRCGLSVFYTSIINFMVFMLGANSTLPAIEYFCIYAGVAVLFDFLLQ 458
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: A0A7S2WB13_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB13_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.010e-26
Identity = 53/94 (56.38%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    1 GIPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ 282
            G+ F ++ Q+LPFI+VGIGVDD+ +IV+A+D+TD  L+ E R++L ++RCGVSITYT+LT+  AF LG+ ++LPA++ FC+YAA AILF+F+ Q
Sbjct:  340 GVIFVSIHQVLPFIIVGIGVDDLLIIVSAFDSTDERLSSENRLSLALRRCGVSITYTTLTDVSAFFLGATSALPAIQAFCIYAAFAILFNFLFQ 433
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: D7FY88_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY88_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 4.200e-25
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 GIPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSIT 165
            G+PFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALG+KRCGVSIT
Sbjct:  335 GVPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGIKRCGVSIT 389
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: K8EQV0_9CHLO (RND family transporter: Niemann-Pick type C1 disease protein-like protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EQV0_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 2.730e-24
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 GIPFTTLSQMLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ 282
            G+ ++ L  +LPF+L+GIGVDDMFV+V AYDNT+P L++ ER+   +   G+SIT TS T+ FAFL+GS TSLPA+  FC YAA  I FD++ Q
Sbjct:  432 GLFYSPLMNVLPFLLLGIGVDDMFVLVNAYDNTNPYLSIAERLGNAMSTAGMSITVTSFTDIFAFLIGSTTSLPALRNFCFYAALGIFFDYLYQ 525
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BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.190e-24
Identity = 56/79 (70.89%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   76 IVAAYDNTDPLLAVEERVALGVKRCGVSIT-----------YTSLTNFFAFLLGSLTSLPAVEYFCLYAATAILFDFIL 279
            IVAAYD+TDP L +EERVA GVKRCGVS+T           YTSLTNFFAF+LG ++SLPAVEYFCLYA TAILFDF L
Sbjct:   14 IVAAYDHTDPSLTMEERVAFGVKRCGVSVTALRRSATYLSEYTSLTNFFAFMLGRVSSLPAVEYFCLYAGTAILFDFFL 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13062.2507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY89_ECTSI1.850e-4693.55Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
D7FY95_ECTSI6.680e-4690.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY98_ECTSI8.710e-4486.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCK4_ECTSI1.000e-4284.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCK9_ECTSI8.370e-2873.42Similar to Patched domain-containing protein 3, pa... [more]
A0A835YJJ3_9STRA5.450e-2754.26Patched family-domain-containing protein n=1 Tax=T... [more]
A0A7S2WB13_9STRA1.010e-2656.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FY88_ECTSI4.200e-2596.36SSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
K8EQV0_9CHLO2.730e-2455.32RND family transporter: Niemann-Pick type C1 disea... [more]
A0A6H5JGQ4_9PHAE3.190e-2470.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13062contigEcto-sp13_S_contig13062:1741..2830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score155.2
Seed ortholog evalue1.3e-35
Seed eggNOG ortholog2880.D7FY89
Model size282
KEGG koko:K07752
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.molting cycle, collagen and cuticulin-based cuticle
EggNOG OGsKOG1934@1,KOG1934@2759
EC3.4.17.22
Cds size255
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.6173522-UTR-Ecto-sp13_S_contig13062:1740..17671681462699.6173522-UTR-Ecto-sp13_S_contig13062:1740..1767Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13062 1741..1767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.6349275-CDS-Ecto-sp13_S_contig13062:1767..18091681462699.6349275-CDS-Ecto-sp13_S_contig13062:1767..1809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13062 1768..1809 +
1681462699.645876-CDS-Ecto-sp13_S_contig13062:2208..23051681462699.645876-CDS-Ecto-sp13_S_contig13062:2208..2305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13062 2209..2305 +
1681462699.6539948-CDS-Ecto-sp13_S_contig13062:2714..28301681462699.6539948-CDS-Ecto-sp13_S_contig13062:2714..2830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13062 2715..2830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13062.2507.1prot_Ecto-sp13_S_contig13062.2507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13062 1768..2830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13062.2507.1

>prot_Ecto-sp13_S_contig13062.2507.1 ID=prot_Ecto-sp13_S_contig13062.2507.1|Name=mRNA_Ecto-sp13_S_contig13062.2507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MLPFILVGIGVDDMFVIVAAYDNTDPLLAVEERVALGVKRCGVSITYTSL
TNFFAFLLGSLTSLPAVEYFCLYAATAILFDFILQ
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mRNA from alignment at Ecto-sp13_S_contig13062:1741..2830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13062.2507.1 ID=mRNA_Ecto-sp13_S_contig13062.2507.1|Name=mRNA_Ecto-sp13_S_contig13062.2507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13062:1741..2830+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATCCCCTTCACGACGCTGTCGCAGATGCTCCCGTTCATTCTCGTCGG
CATCGGCGTGGACGACATGGTAAGTGCGTGCAGGCAGGTAGCCGGGCAGG
CCCTACTTTTATGAAGGAGGGAGAGTTGTTTTTTCAGTTTCGGTTGTTCG
CCACAAGCTCTCTACTCCCGGTTTTCCGGCGAGACACTTTTTTTCATTCC
ACCTCTGTTGGCGGTGTCACGTGTATCTGGACGCCTATTTCCCCTCATCC
CCTGCACTCTCATTTTGTCACCGCGGAAACCAGACAACTCTTTGAATATC
GCTACCACGGCATGTATTGTGCCTGCTGTCGATCTCGGACCTACCTCCAC
CAATCTGTCTTGTATATTTCGTCTGTCTGTCTGTGTGTGTCTCTGTCTAT
CTCTCTCTCCGTCTCTCTCTCCCCCCACTCCACCGTCACATGTCATGAAC
TATCTACTCTGCTCGCAGTTTGTCATCGTCGCGGCGTACGACAACACCGA
CCCCTTGCTGGCGGTGGAGGAAAGAGTCGCCCTCGGAGTCAAGCGCTGCG
GGGTGTCCATCACCTGTAAGTTGTACTAGCAATTTTGTTCATGTGTATGG
AAAGCATTTGGCTTATTCCAACGATCGTGTAGTTCCACCCGTAGGGTGCG
GCAACCCGACGAGGGCCCACAGTGCACGATGAAAGGGACATTCCCATGCT
GCATTCAACAAACTAATGGTGTAGTTCGGCCAACGAGAAATATTGTACGT
GGTCTCATGAACGATATCGCACTCGTTAGTGTTCCCAAGACGACCTCAAA
GCGTGGGCAGTGCTTCATTCACGGGTGTCGTACCCATATGTTAGCATAGG
GTGATCAGTACTTGTGCGACGGCCCCCTTGTCCGCCATCGAAGGCTATGT
TGTTGCTGTTGGACCTACCTCATGAATTCCCCCCCCCCTCCTCCTCCCCC
CCGCCTTGGTTTTTACCGTCACAGACACGTCGCTGACGAACTTCTTCGCC
TTCCTCCTGGGCAGCTTGACGTCCCTTCCTGCGGTGGAGTACTTCTGCCT
CTACGCCGCCACTGCCATCTTGTTTGACTTCATCCTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13062:1741..2830+

>mRNA_Ecto-sp13_S_contig13062.2507.1 ID=mRNA_Ecto-sp13_S_contig13062.2507.1|Name=mRNA_Ecto-sp13_S_contig13062.2507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13062:1741..2830+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCGTTCATTCTCGTCGGCATCGGCGTGGACGACATGTTTGTCAT
CGTCGCGGCGTACGACAACACCGACCCCTTGCTGGCGGTGGAGGAAAGAG
TCGCCCTCGGAGTCAAGCGCTGCGGGGTGTCCATCACCTACACGTCGCTG
ACGAACTTCTTCGCCTTCCTCCTGGGCAGCTTGACGTCCCTTCCTGCGGT
GGAGTACTTCTGCCTCTACGCCGCCACTGCCATCTTGTTTGACTTCATCC
TCCAG
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