mRNA_Ecto-sp13_S_contig13053.2505.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13053.2505.1
Unique NamemRNA_Ecto-sp13_S_contig13053.2505.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13053.2505.1 vs. uniprot
Match: A0A6H5JFR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR6_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 2.200e-65
Identity = 144/170 (84.71%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:    1 ALRKSTAGMLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALAGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAETAXXXXXXXXGPEASTPREEAVSSATTXXXXXXXXXXXXXXXXXXXXXPRKKGRGRRSGGQ 510
            ALRKSTAGMLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGK L+GEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAE  XXXXXXXX           VS+AT XXXXXXXXXXXXXX       PR+KGRGRRSGG+
Sbjct:  334 ALRKSTAGMLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKTLSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAEAXXXXXXXXXXXXXXXXXXXXVSAATXXXXXXXXXXXXXXXEGVPAAAPRRKGRGRRSGGK 503
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BLAST of mRNA_Ecto-sp13_S_contig13053.2505.1 vs. uniprot
Match: D7FWZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ9_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 3.890e-63
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 ALRKSTAGMLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALAGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAETA 333
            ALRKSTAGMLRSGARPVAVAPTE+GLELVWETLTDDLKAVQAGKLSLVV EEPAGIRIVRVAGPGQPQGKAL+GEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAE A
Sbjct:  136 ALRKSTAGMLRSGARPVAVAPTESGLELVWETLTDDLKAVQAGKLSLVVTEEPAGIRIVRVAGPGQPQGKALSGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAAEAA 246
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BLAST of mRNA_Ecto-sp13_S_contig13053.2505.1 vs. uniprot
Match: A0A7S3XU61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU61_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 1.410e-15
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   28 LRSGARPVAVAPT-ETGLELVWETL-TDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALAGEEEIVQSLLEGINTVAYPKSFVKRKAP 303
            +R+GARP +V P  E G  + WETL    ++ V  G+L + V  EPAG+ + R  G G P    L GEEEI+QSL+EG+NTVA+P+ +V + AP
Sbjct:  304 IRTGARPTSVQPLGELGAAVQWETLDARTMEVVYPGRLEIQV--EPAGLTVTRTDGKGGPLSSILPGEEEIIQSLIEGLNTVAFPRGYVMKNAP 395
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BLAST of mRNA_Ecto-sp13_S_contig13053.2505.1 vs. uniprot
Match: A0A7S2UTP4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTP4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.210e-13
Identity = 38/99 (38.38%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   25 MLRSGARPVAV--APTETGLELVWETLTDDLKAVQAGKLSLV--VNEEPAGI-RIVRVAGPGQPQGKALAGEEEIVQSLLEGINTVAYPKSFVKRKAPK 306
            M RSG RPV +  AP++    +VWE+L +DL+A++ G L ++  V ++ +G+ R+VR  G G  +   L GEEE++ + +EG+NT+A+ K F++++  K
Sbjct:  351 MTRSGERPVRMITAPSKDQSSIVWESLDEDLRAIRTGTLDVIIEVEDDKSGVLRVVRTDGSGNARTTPLKGEEEVLSAFIEGVNTMAFGKGFLRKQKAK 449
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BLAST of mRNA_Ecto-sp13_S_contig13053.2505.1 vs. uniprot
Match: A0A7S2GEE9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GEE9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.710e-12
Identity = 36/98 (36.73%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    1 ALRKSTAGMLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRIVRVAGPGQPQGKALAGEEEIVQSLLEGINTVAYPKSFVKR 294
            AL+  +  + R+GARPV V  T+TG  + WE +  + +    G+L + +++    +R+VR    G+P G +L GE+E++Q LLEGI T  Y K++  R
Sbjct:  291 ALQTMSTYIRRTGARPVVVRATDTGAAVRWENMNSNFEMDFVGQLQIEISDSD--LRLVRADASGRPLGTSLPGEDELLQRLLEGIETTVYAKNYATR 386
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BLAST of mRNA_Ecto-sp13_S_contig13053.2505.1 vs. uniprot
Match: A0A835YZQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZQ9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.580e-10
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:   40 ARPVAVAPTETGLELVWETLTDDLKAVQAGKLS-------------------LVVNEEP--AGIRIVRVAGPGQPQGKALAGEEEIVQSLLEGINTVAYPKSFVKRK 297
            A P +      G E++WE  T +L+    G+L                    +++ +EP  AG+R+VR  G G PQ   L GE+EIVQSLLEGIN VAY + +V RK
Sbjct:  310 AAPASAYAPGGGAEVIWEAPTRNLEVEVTGRLQPKAAAAQQQALIASRRSTQVLLRDEPGSAGMRVVRCDGAGAPQIVPLVGEDEIVQSLLEGINAVAYARGYVTRK 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13053.2505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JFR6_9PHAE2.200e-6584.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWZ9_ECTSI3.890e-6396.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XU61_HETAK1.410e-1546.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UTP4_9STRA4.210e-1338.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GEE9_9STRA8.710e-1236.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YZQ9_9STRA6.580e-1038.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13053contigEcto-sp13_S_contig13053:2621..4526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score192.2
Seed ortholog evalue2e-46
Seed eggNOG ortholog2880.D7FWZ9
Model size537
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2BY4X@1,2SKQ1@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003740.1
Cds size513
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.4925504-CDS-Ecto-sp13_S_contig13053:2620..27991681462699.4925504-CDS-Ecto-sp13_S_contig13053:2620..2799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13053 2621..2799 -
1681462699.5091283-CDS-Ecto-sp13_S_contig13053:3918..41061681462699.5091283-CDS-Ecto-sp13_S_contig13053:3918..4106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13053 3919..4106 -
1681462699.5187132-CDS-Ecto-sp13_S_contig13053:4356..45021681462699.5187132-CDS-Ecto-sp13_S_contig13053:4356..4502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13053 4357..4502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462699.5343227-UTR-Ecto-sp13_S_contig13053:4502..45261681462699.5343227-UTR-Ecto-sp13_S_contig13053:4502..4526Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13053 4503..4526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13053.2505.1prot_Ecto-sp13_S_contig13053.2505.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13053 2621..4502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13053.2505.1

>prot_Ecto-sp13_S_contig13053.2505.1 ID=prot_Ecto-sp13_S_contig13053.2505.1|Name=mRNA_Ecto-sp13_S_contig13053.2505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MLRSGARPVAVAPTETGLELVWETLTDDLKAVQAGKLSLVVNEEPAGIRI
VRVAGPGQPQGKALAGEEEIVQSLLEGINTVAYPKSFVKRKAPKVSRAAA
ETAMAAAASATGPEASTPREEAVSSATTRAPAAEAAAATAAAEGVPAAAP
RKKGRGRRSGGQAQFLLFFG*
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mRNA from alignment at Ecto-sp13_S_contig13053:2621..4526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13053.2505.1 ID=mRNA_Ecto-sp13_S_contig13053.2505.1|Name=mRNA_Ecto-sp13_S_contig13053.2505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13053:2621..4526- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCTGCGCAAGTCCACTGCGGGAATGCTCCGCAGCGGGGCGCGGCCTGT
GGCTGTGGCGCCGACCGAGACGGGCCTTGAGCTGGTGTGGGAGACGCTGA
CGGACGACCTCAAGGCCGTGCAGGCCGGGAAGCTGTCGCTCGTCGTCAAC
GAGGAACCCGCGGGGATAAGGTGGGTGTACCACGTTTCGGTAGCCTCGGC
GGATTATTATTAACGCTCGGCCTTGGTTTTCTCTGTGAAAAAACTGCAGT
GGCGGGCGTTTTGCTGTTTGGTGTCAGGCTTGATTTCTCGCTCGCTCGCT
CTCATTTTTTGAATACGTACTCCCGATCACAGAATGAATATACCCAGTTT
TCAGTAGATAACACCATAGTTAAAACGATTTTTTATATGTGTGGGGCGGT
TTCTTGTTCCTTCTTGACAGGATTGTTCGAGTGGCAGGTCCGGGGCAGCC
GCAGGGCAAGGCCCTCGCGGGGGAGGAGGAGATCGTGCAGAGCCTGCTGG
AGGGGATTAACACGGTGGCCTACCCCAAGTCGTTCGTGAAGCGGAAGGCG
CCCAAGGTCTCCCGCGCGGCGGCGGAGACGGCCATGGCGGCGGCGGCTTC
GGCGACAGGTCGGAATTAAATTTGTGCCCCCTTTCCCATCCTGTGGCGGG
CGTACAGTAGTAGTCCCGGTAAAGTGTCGGTAGGTGGCAGCCCCTTGATC
TTGCATTGTTTGCGGGCAACTGGCACTCTTCAGAGCATGAAACGACTTGA
ATATTCCATCTGTGCCGGACGATTCCGTCGGCATTGTACCGGGCAACCGG
CAGTGTTTAACCAGCATTATAGCGAGACCACCACTGTTTCTGGTTTGGCA
CAACAAAGACAAGGATGATGCCGACCAGCTTGTGGGACGATCCTTGTGAA
ACGTGGTGTAGCCTGGGCCGGCGAAAACCCGGCATATCGCTCCTCCTTCC
CGGCTTGCGAGGTCAACGGTCTAACGACCACGGCATGCGTTTGTACATCT
TCCCGTTCGCCCTCAAAATGGAGCTGGGTTGTTTTGTTTCGGCGGTTCAA
AATCGGTTGCGAGGCCTCCGCGCAAAGTTAACGGCCATTTTGAGTACCCG
CTCCGCTTCCCGGCGGATGCCTCGTAAGAGAAGTACTCGGCCCATCGGGT
ACATCGACGTCGGAATCAAGGAACTACCGCTGTGTACGCGTAGAAGGACT
CTCCCTGTTTTCACTTGCGAGCTGCTTTTACAAGGGCGGAATGAGATGAC
GGCGATGTCGGAAAGCACTGCTTCCGTCGAATTCTCCCACCAGCTTTGTA
CAGCAGCGGGCTGAAGGTTTGGCGGGGAAAAGCCAGCCTCTCGCCGCTCG
CGCTGGTTCCCGCGTGGCTTGTCATGCCAACGCGCCTCGAGCACTCAATG
TGCAGCTTCATATGCTTCCTTTGAGTTCCCCCCCCACCATGGTGCACAGG
CTATACGCCATGCACAATAGTGAGTTTCCCCCCGAACATGGGACCGCCTT
CTCGAGGAACTAAGTTTACGACGAAATGAACAGGGAGGGGGTATGCAGAC
CTGATCCCTAACCTAACCCTGACCCAACTTCCGCGATTGCATTCTTTATC
CATCATGATTATCTTATACTAGAAAAAGTCCTACGAAGGCTACTTACTGC
AAACACGAGTGTGGCCCCTTTTGGGCGCGCGTGATACGGAGCCCCCCCCC
CCCCCTTCCAATAAAACCGTCGACCAGGCCCGGAGGCATCAACTCCGCGG
GAAGAGGCCGTCTCCTCGGCAACAACAAGAGCACCGGCTGCGGAAGCAGC
GGCAGCAACAGCGGCGGCGGAAGGTGTGCCGGCGGCGGCCCCTCGAAAAA
AGGGCCGCGGAAGGCGATCGGGGGGGCAAGCCCAGTTCCTCCTATTTTTT
GGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13053:2621..4526-

>mRNA_Ecto-sp13_S_contig13053.2505.1 ID=mRNA_Ecto-sp13_S_contig13053.2505.1|Name=mRNA_Ecto-sp13_S_contig13053.2505.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13053:2621..4526- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCGCAGCGGGGCGCGGCCTGTGGCTGTGGCGCCGACCGAGACGGG
CCTTGAGCTGGTGTGGGAGACGCTGACGGACGACCTCAAGGCCGTGCAGG
CCGGGAAGCTGTCGCTCGTCGTCAACGAGGAACCCGCGGGGATAAGGATT
GTTCGAGTGGCAGGTCCGGGGCAGCCGCAGGGCAAGGCCCTCGCGGGGGA
GGAGGAGATCGTGCAGAGCCTGCTGGAGGGGATTAACACGGTGGCCTACC
CCAAGTCGTTCGTGAAGCGGAAGGCGCCCAAGGTCTCCCGCGCGGCGGCG
GAGACGGCCATGGCGGCGGCGGCTTCGGCGACAGGCCCGGAGGCATCAAC
TCCGCGGGAAGAGGCCGTCTCCTCGGCAACAACAAGAGCACCGGCTGCGG
AAGCAGCGGCAGCAACAGCGGCGGCGGAAGGTGTGCCGGCGGCGGCCCCT
CGAAAAAAGGGCCGCGGAAGGCGATCGGGGGGGCAAGCCCAGTTCCTCCT
ATTTTTTGGGTGA
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