mRNA_Ecto-sp13_S_contig13033.2490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13033.2490.1
Unique NamemRNA_Ecto-sp13_S_contig13033.2490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13033.2490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13033contigEcto-sp13_S_contig13033:2593..3134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size542
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.3769271-UTR-Ecto-sp13_S_contig13033:2592..27901681462698.3769271-UTR-Ecto-sp13_S_contig13033:2592..2790Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13033 2593..2790 +
1681462698.3960652-UTR-Ecto-sp13_S_contig13033:3099..31341681462698.3960652-UTR-Ecto-sp13_S_contig13033:3099..3134Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13033 3100..3134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.3883777-CDS-Ecto-sp13_S_contig13033:2790..30991681462698.3883777-CDS-Ecto-sp13_S_contig13033:2790..3099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13033 2791..3099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13033.2490.1prot_Ecto-sp13_S_contig13033.2490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13033 2791..3099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13033.2490.1

>prot_Ecto-sp13_S_contig13033.2490.1 ID=prot_Ecto-sp13_S_contig13033.2490.1|Name=mRNA_Ecto-sp13_S_contig13033.2490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MELQRKLVLLRDSVTALRHYRQIGYFVRPASTTERGKSEWEQRERRSGRS
VSSSRLSSTPTYSRRSLYLRFGDGVQISAFSVSRQGLSPRDDRFSNAYPK
GW*
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mRNA from alignment at Ecto-sp13_S_contig13033:2593..3134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13033.2490.1 ID=mRNA_Ecto-sp13_S_contig13033.2490.1|Name=mRNA_Ecto-sp13_S_contig13033.2490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=542bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13033:2593..3134+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTAACCTTGAGCATCAGCTACGCTCCTCCGGTCACCGCAAAGGCCTGCA
GCAGCTCTCCACGAGCAGCGTTTCAAGAGTCCGACACACTGCCTTCTGCT
GTGTACTAGCAATATACGTTCGTATACGGAAACCACCACGCCCAGCACGC
AGCTGGCTCTCTGTGCTTGTCAGGTTATTGAGTTGAAGTACAACCGCCAT
GGAGCTCCAGCGCAAACTCGTTTTATTGAGAGATTCGGTCACAGCTCTGA
GACATTACCGACAGATCGGGTACTTCGTTAGACCGGCGTCCACGACGGAA
CGAGGCAAGAGCGAATGGGAGCAACGGGAGCGGCGGAGTGGAAGAAGCGT
ATCGTCATCCAGATTATCCTCTACACCAACATACAGCAGACGCTCACTGT
ATCTCCGCTTTGGCGACGGTGTGCAAATCTCCGCTTTTTCGGTGAGCCGA
CAAGGCCTCTCACCTCGCGACGACCGTTTCTCCAACGCTTACCCGAAGGG
TTGGTGAGCCTTGGCCGCTCGCCACCCTGAGACAGCGACAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13033:2593..3134+

>mRNA_Ecto-sp13_S_contig13033.2490.1 ID=mRNA_Ecto-sp13_S_contig13033.2490.1|Name=mRNA_Ecto-sp13_S_contig13033.2490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13033:2593..3134+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTCCAGCGCAAACTCGTTTTATTGAGAGATTCGGTCACAGCTCT
GAGACATTACCGACAGATCGGGTACTTCGTTAGACCGGCGTCCACGACGG
AACGAGGCAAGAGCGAATGGGAGCAACGGGAGCGGCGGAGTGGAAGAAGC
GTATCGTCATCCAGATTATCCTCTACACCAACATACAGCAGACGCTCACT
GTATCTCCGCTTTGGCGACGGTGTGCAAATCTCCGCTTTTTCGGTGAGCC
GACAAGGCCTCTCACCTCGCGACGACCGTTTCTCCAACGCTTACCCGAAG
GGTTGGTGA
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