mRNA_Ecto-sp13_S_contig102243.249.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig102243.249.1
Unique NamemRNA_Ecto-sp13_S_contig102243.249.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig102243.249.1 vs. uniprot
Match: D7G8Z2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 3.030e-23
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 DMWQLCGADPERRFTWDMANNDNLVFGGGFQPRARYDRY 117
            DMWQLCGADPERRFTWDMANNDNLVFGGGFQPRARYDRY
Sbjct:  159 DMWQLCGADPERRFTWDMANNDNLVFGGGFQPRARYDRY 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102243.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Z2_ECTSI3.030e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102243contigEcto-sp13_S_contig102243:260..388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.8
Seed ortholog evalue4e-17
Seed eggNOG ortholog2880.D7G8Z2
Preferred nameTDP2
Model size129
KEGG koko:K19619
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000287,GO:0002009,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003712,GO:0003714,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0008081,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010648,GO:0016234,GO:0016235,GO:0016604,GO:0016605,GO:0016787,GO:0016788,GO:0017015,GO:0019219,GO:0019222,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030145,GO:0030154,GO:0030182,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0036317,GO:0042578,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060026,GO:0060027,GO:0060255,GO:0060429,GO:0065007,GO:0070013,GO:0070259,GO:0070260,GO:0071704,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2001141
Exons1
EggNOG free text desc.5'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2756@1,KOG2756@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-15_002530.1
Cds size126
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.755039-CDS-Ecto-sp13_S_contig102243:259..3851681462516.755039-CDS-Ecto-sp13_S_contig102243:259..385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102243 260..385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.766446-UTR-Ecto-sp13_S_contig102243:385..3881681462516.766446-UTR-Ecto-sp13_S_contig102243:385..388Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig102243 386..388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102243.249.1prot_Ecto-sp13_S_contig102243.249.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig102243 260..385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig102243.249.1

>prot_Ecto-sp13_S_contig102243.249.1 ID=prot_Ecto-sp13_S_contig102243.249.1|Name=mRNA_Ecto-sp13_S_contig102243.249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MWQLCGADPERRFTWDMANNDNLVFGGGFQPRARYDRYCTAS
back to top

mRNA from alignment at Ecto-sp13_S_contig102243:260..388-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig102243.249.1 ID=mRNA_Ecto-sp13_S_contig102243.249.1|Name=mRNA_Ecto-sp13_S_contig102243.249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102243:260..388- (Ectocarpus species13 EcNAP12_S_4_19m)
GACATGTGGCAACTTTGCGGTGCGGATCCTGAGCGTCGTTTCACTTGGGA
CATGGCCAACAACGACAACCTCGTCTTCGGCGGAGGGTTCCAGCCTAGGG
CCAGATACGACAGGTATTGTACCGCATCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102243:260..388-

>mRNA_Ecto-sp13_S_contig102243.249.1 ID=mRNA_Ecto-sp13_S_contig102243.249.1|Name=mRNA_Ecto-sp13_S_contig102243.249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102243:260..388- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGCAACTTTGCGGTGCGGATCCTGAGCGTCGTTTCACTTGGGACAT
GGCCAACAACGACAACCTCGTCTTCGGCGGAGGGTTCCAGCCTAGGGCCA
GATACGACAGGTATTGTACCGCATCC
back to top