mRNA_Ecto-sp13_S_contig13007.2472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13007.2472.1
Unique NamemRNA_Ecto-sp13_S_contig13007.2472.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13007.2472.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.580e-35
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 2 
Query:    2 AAAGPSMRSDPSFITPERSPLSMADGKGEAFPELLPGPAERRSVVTALRGAARIVGGDSEGGLEAMVTTAAXXVA-AAQRPSV 247
            AAAGPSMRSDP FITPERSPLSMADGKGEAFPELLPGPAERRSVVTALRGAAR+VGGDSEGGLEA VTTAA  VA AAQRPSV
Sbjct: 4601 AAAGPSMRSDPCFITPERSPLSMADGKGEAFPELLPGPAERRSVVTALRGAARVVGGDSEGGLEATVTTAAAGVAVAAQRPSV 4683
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13007.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE1.580e-3592.77FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13007contigEcto-sp13_S_contig13007:2349..2691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size345
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.2305083-UTR-Ecto-sp13_S_contig13007:2348..23671681462697.2305083-UTR-Ecto-sp13_S_contig13007:2348..2367Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13007 2349..2367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.2404387-CDS-Ecto-sp13_S_contig13007:2367..26911681462697.2404387-CDS-Ecto-sp13_S_contig13007:2367..2691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13007 2368..2691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13007.2472.1prot_Ecto-sp13_S_contig13007.2472.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13007 2368..2691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13007.2472.1

>prot_Ecto-sp13_S_contig13007.2472.1 ID=prot_Ecto-sp13_S_contig13007.2472.1|Name=mRNA_Ecto-sp13_S_contig13007.2472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MRSDPSFITPERSPLSMADGKGEAFPELLPGPAERRSVVTALRGAARIVG
GDSEGGLEAMVTTAAAAVAAAQRPSVLPADGDAGEEEGGGVQEEEDGVGA
KHGEEGAA
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mRNA from alignment at Ecto-sp13_S_contig13007:2349..2691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13007.2472.1 ID=mRNA_Ecto-sp13_S_contig13007.2472.1|Name=mRNA_Ecto-sp13_S_contig13007.2472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13007:2349..2691+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGCCGCCGGCCCTTCGATGCGGAGTGACCCGAGCTTCATCACCCCGG
AGCGCAGCCCGCTGAGCATGGCGGACGGCAAGGGGGAGGCGTTCCCGGAG
CTCCTCCCCGGCCCGGCGGAGAGGAGGTCGGTCGTTACCGCCCTCCGTGG
GGCAGCGAGGATCGTCGGGGGAGACTCAGAAGGAGGGCTGGAGGCGATGG
TGACGACAGCGGCGGCGGCGGTGGCGGCGGCGCAACGACCTAGTGTTCTC
CCCGCTGATGGTGATGCCGGAGAGGAAGAAGGAGGAGGGGTTCAGGAAGA
GGAGGACGGCGTGGGTGCCAAGCACGGGGAGGAGGGGGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13007:2349..2691+

>mRNA_Ecto-sp13_S_contig13007.2472.1 ID=mRNA_Ecto-sp13_S_contig13007.2472.1|Name=mRNA_Ecto-sp13_S_contig13007.2472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13007:2349..2691+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGTGACCCGAGCTTCATCACCCCGGAGCGCAGCCCGCTGAGCAT
GGCGGACGGCAAGGGGGAGGCGTTCCCGGAGCTCCTCCCCGGCCCGGCGG
AGAGGAGGTCGGTCGTTACCGCCCTCCGTGGGGCAGCGAGGATCGTCGGG
GGAGACTCAGAAGGAGGGCTGGAGGCGATGGTGACGACAGCGGCGGCGGC
GGTGGCGGCGGCGCAACGACCTAGTGTTCTCCCCGCTGATGGTGATGCCG
GAGAGGAAGAAGGAGGAGGGGTTCAGGAAGAGGAGGACGGCGTGGGTGCC
AAGCACGGGGAGGAGGGGGCGGCG
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