mRNA_Ecto-sp13_S_contig12977.2442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12977.2442.1
Unique NamemRNA_Ecto-sp13_S_contig12977.2442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: D7G7G0_ECTSI (Alpha-SNAP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7G0_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 6.910e-38
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLVARI 219
            PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQ GLCLLAQGDTVAARNKQSDFTS DYTF DSREYR + ++
Sbjct:  176 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQAGLCLLAQGDTVAARNKQSDFTSADYTFDDSREYRFLDQL 248
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A6T8LLA3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8LLA3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.710e-16
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLVA 213
            P+L   AEIYE LGR C+E  LL  NAKGY+LQ+ LC LA GD +AA    S F S+D+TF +SRE + V+
Sbjct:  188 PDLLKGAEIYENLGRECLENNLLKYNAKGYFLQSCLCHLANGDAIAASQSLSRFESLDFTFGESREGKFVS 258
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A7S2IBT3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBT3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.690e-15
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLVARI 219
            P+L  AA++YE+LGR C+E  LL  NAKGY+LQ+ +C LA GD + A    S F  +DYTF DSRE +   ++
Sbjct:  190 PDLLRAAQLYEELGRHCLETNLLKFNAKGYFLQSVMCHLANGDAIGAGQGLSKFEGLDYTFADSREGKFAKQL 262
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A7S4TA13_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TA13_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.240e-15
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLVARIFRT 228
            P+L  AA++YE+LGR C+E  LL  NAKGY+LQ+ +C LA GD +      S F  +DYTF DSRE +   ++  T
Sbjct:  217 PDLLRAAQLYEELGRHCLETNLLKFNAKGYFLQSVMCHLANGDAIGGGQGLSKFEGLDYTFADSREGKFARQLVET 292
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A1Z5JPI2_FISSO (Alpha-soluble NSF attachment protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPI2_FISSO)

HSP 1 Score: 75.9 bits (185), Expect = 1.310e-14
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLVARI 219
            P+L  A+++YE LGR+C++  LL  NAKGY+LQ  LC LA  D V  R   S F  +DYTF DSRE +   ++
Sbjct:  186 PDLLRASQLYEDLGRNCLDSNLLKFNAKGYFLQAVLCHLANNDAVGGREALSRFEGLDYTFSDSREGKFATQL 258
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A836CLW2_9STRA (Alpha-SNAP n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-14
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLV 210
            P+   AA+I+E LGRSC   +LL MNAKGY+ Q  LCL+A  D+VAAR K  +F SVD+TF  SRE +  
Sbjct:  179 PDYMGAAKIFEDLGRSCTSTRLLQMNAKGYFQQAVLCLMAANDSVAARLKLDEFKSVDFTFGASRECKFA 248
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A7S1CZ61_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZ61_CYCTE)

HSP 1 Score: 73.9 bits (180), Expect = 7.240e-14
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLVARI 219
            P+LT AA++Y+ LGR C++  LL  NAKGY+LQ   C LAQGD VA       + ++DYTF  SRE +  +++
Sbjct:  196 PDLTRAAQLYDDLGRRCLDSNLLKFNAKGYFLQAIFCHLAQGDAVAVTQSIQRYEALDYTFGGSREGKFASQL 268
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A7S2WGN8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGN8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.280e-13
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSRE 198
            P+L  AAEIYE LG+ C++  LL  NAKGY+LQ  LC L  GD++AA      + + DYTF DSRE
Sbjct:  183 PDLIRAAEIYEDLGKQCLDNNLLKYNAKGYFLQAILCHLGNGDSIAATQATQRYEAWDYTFGDSRE 248
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A7S3P3Z3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P3Z3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.450e-13
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSRE 198
            P+L  A +IY++LGR+C++  LL  NAKGY+LQ+ LC LA  D + A      +  VDYTF +SRE
Sbjct:  183 PDLLKAGQIYDELGRNCLDSNLLKFNAKGYFLQSILCQLANSDAIGAEQALQRYEGVDYTFSESRE 248
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BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Match: A0A7S1YCT5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YCT5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.500e-13
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNKQSDFTSVDYTFHDSREYRLVARI 219
            P+L  AA +Y+ LGRS ++  +L  +AKGY+LQT LC LA GD++A R   + + ++DYTF  SRE +  A++
Sbjct:  184 PDLLRAAGLYDSLGRSSLDSNMLKFHAKGYFLQTILCHLANGDSIAGRQAVTRYEALDYTFGTSREGKFAAQL 256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12977.2442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G7G0_ECTSI6.910e-3889.04Alpha-SNAP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A6T8LLA3_9STRA2.710e-1654.93Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2IBT3_9STRA3.690e-1549.32Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4TA13_9STRA6.240e-1547.37Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A1Z5JPI2_FISSO1.310e-1447.95Alpha-soluble NSF attachment protein n=2 Tax=Fistu... [more]
A0A836CLW2_9STRA1.710e-1454.29Alpha-SNAP n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S1CZ61_CYCTE7.240e-1446.58Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2WGN8_9STRA1.280e-1353.03Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3P3Z3_9STRA6.450e-1348.48Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1YCT5_9STRA6.500e-1345.21Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12977contigEcto-sp13_S_contig12977:142..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score135.6
Seed ortholog evalue9.8e-30
Seed eggNOG ortholog2880.D7G7G0
Preferred nameNAPB
Model size228
KEGG koko:K15296
KEGG Pathwayko04138,ko04721,map04138,map04721
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0000278,GO:0000281,GO:0000910,GO:0001505,GO:0001654,GO:0001671,GO:0001745,GO:0002009,GO:0002090,GO:0002165,GO:0003674,GO:0005483,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007274,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010646,GO:0010807,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019222,GO:0019898,GO:0019905,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030054,GO:0030100,GO:0030154,GO:0030182,GO:0030234,GO:0030424,GO:0031090,GO:0031201,GO:0031323,GO:0031410,GO:0031629,GO:0031982,GO:0032386,GO:0032501,GO:0032502,GO:0032781,GO:0032879,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033267,GO:0034214,GO:0034613,GO:0034622,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035249,GO:0035295,GO:0035494,GO:0036465,GO:0040007,GO:0042144,GO:0042886,GO:0042995,GO:0043005,GO:0043085,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043462,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044248,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045026,GO:0045055,GO:0045176,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0046928,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048259,GO:0048280,GO:0048284,GO:0048488,GO:0048489,GO:0048513,GO:0048526,GO:0048563,GO:0048569,GO:0048589,GO:0048592,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050804,GO:0051046,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051301,GO:0051336,GO:0051345,GO:0051588,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055044,GO:0060255,GO:0060322,GO:0060341,GO:0060429,GO:0060560,GO:0060562,GO:0060589,GO:0060590,GO:0060627,GO:0061024,GO:0061025,GO:0061640,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070044,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0090596,GO:0097458,GO:0097479,GO:0097480,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098772,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099177,GO:0099500,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0150034,GO:1902803,GO:1903047,GO:1903305,GO:1903530,GO:2000300
Exons2
EggNOG free text desc.SNARE complex disassembly
EggNOG OGsKOG1586@1,KOG1586@2759
Cds size228
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.301422-CDS-Ecto-sp13_S_contig12977:141..2591681462694.301422-CDS-Ecto-sp13_S_contig12977:141..259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12977 142..259 +
1681462694.3135655-CDS-Ecto-sp13_S_contig12977:812..9221681462694.3135655-CDS-Ecto-sp13_S_contig12977:812..922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12977 813..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12977.2442.1prot_Ecto-sp13_S_contig12977.2442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12977 142..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12977.2442.1

>prot_Ecto-sp13_S_contig12977.2442.1 ID=prot_Ecto-sp13_S_contig12977.2442.1|Name=mRNA_Ecto-sp13_S_contig12977.2442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
PNLTLAAEIYEKLGRSCMEKKLLAMNAKGYWLQTGLCLLAQGDTVAARNK
QSDFTSVDYTFHDSREYRLVARIFRT
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mRNA from alignment at Ecto-sp13_S_contig12977:142..922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12977.2442.1 ID=mRNA_Ecto-sp13_S_contig12977.2442.1|Name=mRNA_Ecto-sp13_S_contig12977.2442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=781bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12977:142..922+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAACCTAACCCTCGCTGCGGAGATCTACGAGAAGCTGGGGCGGTCGTG
CATGGAAAAGAAGCTTCTTGCGATGAACGCTAAGGGCTACTGGCTGCAGA
CGGGGCTGTGCCTCCTAGGTGAGCACAGCAATAGAGTGTACCTGTTGATC
CCACATGATATACTCTTGACAGCAGAGTATTGGAGTTCAACATCTGTACG
CAGGTACGGTGTCCGTTGTCGTTGATGCCGTTTCCTGGATGTGTTGGTGG
TGGGATGTTCTCCGGTGCGCCGGGTTGTTAGCGAATGTCTCGTGCCCATA
CTCCGCGGCGTCTACACGTGCACAGTAGTACCGGCCCGCTCAACCAATAC
TCAAGAGCAGGCTCTGCTTGGTTTTCTCAAGTTTGGCGAAGGTTGAGCAT
GAACTCTTTGTATCGGAATTTGAGTTGGGCTCGGCGCAGATGCTCCATAG
GTTCTCTTGTGATGTATTTTCAGCACCTCAGCGAGCCTGATTTTGTTACG
GCCTCGTTTTTCGTGAGCGGACCGCTACTGCTGTGTTGCCAACTTATTTC
GATCACGGACCAATTAATTGCAATGCGGCCTTTGCTCATCCGAGTCTCTT
GTCGCTGCCCGCTTGTCCTGTGGGCCATGCACATGTTGCCCGCTTGCTTT
GCTTCATCTCATCTGACACAGCACAAGGGGACACTGTGGCCGCCCGAAAT
AAGCAGAGCGACTTCACCTCAGTGGACTACACTTTCCACGACTCGAGAGA
GTACAGGTTGGTCGCGAGGATATTCCGCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12977:142..922+

>mRNA_Ecto-sp13_S_contig12977.2442.1 ID=mRNA_Ecto-sp13_S_contig12977.2442.1|Name=mRNA_Ecto-sp13_S_contig12977.2442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12977:142..922+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAACCTAACCCTCGCTGCGGAGATCTACGAGAAGCTGGGGCGGTCGTG
CATGGAAAAGAAGCTTCTTGCGATGAACGCTAAGGGCTACTGGCTGCAGA
CGGGGCTGTGCCTCCTAGCACAAGGGGACACTGTGGCCGCCCGAAATAAG
CAGAGCGACTTCACCTCAGTGGACTACACTTTCCACGACTCGAGAGAGTA
CAGGTTGGTCGCGAGGATATTCCGCACG
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