mRNA_Ecto-sp13_S_contig10219.243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10219.243.1
Unique NamemRNA_Ecto-sp13_S_contig10219.243.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Match: A0A6H5K431_9PHAE (GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K431_9PHAE)

HSP 1 Score: 627 bits (1617), Expect = 2.220e-217
Identity = 341/402 (84.83%), Postives = 348/402 (86.57%), Query Frame = 1 
Query:    1 MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAAAAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSSDPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFERLVPRDKQQXXXXXXXXXXXXXXXXXXXXXXXDAGAGPLRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQGQS 1206
            MRLAPL LVPPS+TPTAAV WPC NNHRHA APTVR T  AHRLRTT AAAAAAQD PDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQ ELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNN+DLHEGLAALCVDSGNPEEAAALYRR L LHATA  E SGRI SFSSS+PSAAGDLSS+ETTEAAAAARKDRWS    VALFKCNASLCQWDDWNGEALALRTAVRRRG R RGRTRG GSGGRLSS+EDDGDLVHRLLLGYED DFER VPRDKQQ                        AGAGP RPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGG+ GPRGRDE+ERT G EGV GVQGQS
Sbjct:    1 MRLAPLCLVPPSLTPTAAVVWPCVNNHRHACAPTVRGTTIAHRLRTTYAAAAAAQDGPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNVDLHEGLAALCVDSGNPEEAAALYRRLLGLHATATAEGSGRIRSFSSSNPSAAGDLSSKETTEAAAAARKDRWS----VALFKCNASLCQWDDWNGEALALRTAVRRRGWRRRGRTRGEGSGGRLSSMEDDGDLVHRLLLGYEDDDFERFVPRDKQQSQGNNVGDSNNGGVDGG-------AGAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGDGGPRGRDEDERTSGGEGVGGVQGQS 391
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BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Match: D7FH04_ECTSI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH04_ECTSI)

HSP 1 Score: 626 bits (1615), Expect = 2.960e-216
Identity = 338/402 (84.08%), Postives = 343/402 (85.32%), Query Frame = 1 
Query:    1 MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAAAAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSSDPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFERLVPRDKQQXXXXXXXXXXXXXXXXXXXXXXXDAGAGPLRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQGQS 1206
            MRLAPLYLVPPSV PTAAV WPCANNHRHAYAPT RAT TAHRLRTTCAAAAAAQD PDNGANTERLLALGRQ TQAGDLESAVYQFE+AASQAPRSAVCQ ELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCL LHA A+ E  GR PSFSSSDPSAAG LSS+E TEAAAAARKDRWS    VALFKCNASLCQWDDWNGEAL LRTAVRRR          GG GGRLSSVEDDGDLVHRLLLGYED DFERLVPRDKQQ                       DAGAGP RPALHPFDSLSAPLSIGDCLAVAQQQT GVL+EARGGNSGPRGRDEE+R LGEEGV GVQGQS
Sbjct:    1 MRLAPLYLVPPSVAPTAAVVWPCANNHRHAYAPTARATTTAHRLRTTCAAAAAAQDGPDNGANTERLLALGRQHTQAGDLESAVYQFEQAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLGLHAAASAEGGGRTPSFSSSDPSAAGHLSSKEATEAAAAARKDRWS----VALFKCNASLCQWDDWNGEALTLRTAVRRREXXXXXXXXXGGVGGRLSSVEDDGDLVHRLLLGYEDDDFERLVPRDKQQRQGNNVGDSDNGGVNG-------DAGAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTSGVLSEARGGNSGPRGRDEEKRILGEEGVGGVQGQS 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K431_9PHAE2.220e-21784.83GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FH04_ECTSI2.960e-21684.08UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10219contigEcto-sp13_S_contig10219:4300..5943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score632.5
Seed ortholog evalue1.4e-178
Seed eggNOG ortholog2880.D7FH04
Model size1206
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41
Ec32 orthologEc-26_002990.1
EC2.4.1.255
Cds size1206
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.3259764-CDS-Ecto-sp13_S_contig10219:4299..47401681462516.3259764-CDS-Ecto-sp13_S_contig10219:4299..4740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10219 4300..4740 +
1681462516.342968-CDS-Ecto-sp13_S_contig10219:5099..53361681462516.342968-CDS-Ecto-sp13_S_contig10219:5099..5336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10219 5100..5336 +
1681462516.3514824-CDS-Ecto-sp13_S_contig10219:5415..59431681462516.3514824-CDS-Ecto-sp13_S_contig10219:5415..5943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10219 5416..5943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10219.243.1prot_Ecto-sp13_S_contig10219.243.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10219 4300..5943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10219.243.1

>prot_Ecto-sp13_S_contig10219.243.1 ID=prot_Ecto-sp13_S_contig10219.243.1|Name=mRNA_Ecto-sp13_S_contig10219.243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAA
AAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVC
QIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADP
NNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSS
DPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEA
LALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFE
RLVPRDKQQVPRDKQQEQGNNVRDSDNGGVDGDAGAGPLRPALHPFDSLS
APLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQG
QS
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mRNA from alignment at Ecto-sp13_S_contig10219:4300..5943+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10219.243.1 ID=mRNA_Ecto-sp13_S_contig10219.243.1|Name=mRNA_Ecto-sp13_S_contig10219.243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1644bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10219:4300..5943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCTAGCTCCTCTCTACCTTGTACCTCCGAGCGTCACCCCAACTGC
AGCCGTGGCATGGCCATGTGCTAACAACCATCGCCATGCCTATGCCCCAA
CCGTAAGAGCTACCATCACCGCCCACCGCCTGCGAACGACGTGCGCAGCA
GCAGCGGCGGCACAAGATCGACCCGACAACGGCGCGAACACCGAGCGACT
GCTCGCCCTCGGCCGGCAACAGACCCAGGCGGGCGATCTAGAGTCCGCCG
TCTACCAGTTCGAGCGGGCCGCTAGCCAGGCCCCGCGGTCGGCGGTGTGT
CAGATAGAGCTTGGCCGAGCTCTCGTCCGATTGGGCAGAGGCCAGGAAGG
GTTCAACTGCCTCGTGGCTGCCTTCGGGATCGATTCTCTGTGTCCGGGCG
TGAAGGACGGCTTCCGCGAGTACTACAGGGCTGAGATTGAGGTTAGGTCC
GTGGTGTATGTTGCCCTTTTGTTGCTGACGCGAGAGTGCTACTTCTGCTG
TGTGCTCCCTGGACGAAAGGATTAGGACGCCGACGAGGACACGTACATAT
CACGAGTCTCTGGTAGGATTTTCATGTAGGAGATTCCGGAGATTGATCCC
TGTTTTCTATTTTCGAACGACTTGTTGACGACTTCCGGACTCCCGAGCCT
GAAGTGCAGTGTTGCAAGCGGAGGATATGCGTCTGCTGTGGTGGTGTGCC
CTGCTGCAAACCATGATACACATGTTTTCACCTTCGAAATATACTCGCCC
CCTCCTCCCTGCTCGATCGAATCTGTCCCATGCGGACCCGCGGGAGTCAG
GCCGACCCGAACAACATCGACCTCCATGAAGGCCTGGCGGCGCTCTGCGT
CGACTCCGGCAATCCCGAAGAGGCTGCCGCTCTCTACCGCCGCTGCCTCG
TACTGCACGCGACTGCAGCAGTAGAGCGAAGTGGAAGAATACCAAGCTTT
TCCTCGTCGGACCCTTCCGCAGCAGGTGATCTCTCGTCCGAGGAGACCAC
AGAAGCGGCGGCCGCGGCTCGAAAGGACCGGTGGTCAGTGGCGCTCTTCA
AGTGCAACGCTTCGCTCTGCCAGTGGGACGACTGGGACCACAGAAGCGGC
GGCCGCGGCTCGAAAGGACCGGTGGTCAGTGGCGCTCTTCAAGTGCAACG
CTTCGCTCTGCCAGTGGGACGACTGGAACGGCGAAGCTCTCGCCCTGAGG
ACTGCCGTTCGGCGGCGGGGGCGGCGGTGGCGAGGGCGAACAAGAGGAGG
AGGGTCTGGGGGGCGGTTGTCGTCGGTGGAGGACGATGGCGATCTGGTAC
ATAGACTGTTGCTCGGATACGAAGACTACGACTTCGAACGGTTGGTGCCT
CGAGACAAGCAGCAAGTGCCTCGAGACAAGCAGCAAGAACAGGGCAACAA
TGTTCGTGACAGCGACAACGGTGGCGTTGATGGAGACGCCGGCGCTGGCC
CTTTGCGACCAGCCCTACACCCTTTCGACTCTCTGAGCGCTCCTCTGTCC
ATCGGCGACTGCCTGGCAGTCGCGCAGCAGCAGACCAGAGGGGTGCTGGC
AGAGGCAAGGGGCGGTAACAGCGGGCCTCGAGGCAGAGACGAAGAAGAAA
GAACGTTGGGAGAAGAGGGCGTGGAGGGGGTGCAGGGCCAATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10219:4300..5943+

>mRNA_Ecto-sp13_S_contig10219.243.1 ID=mRNA_Ecto-sp13_S_contig10219.243.1|Name=mRNA_Ecto-sp13_S_contig10219.243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10219:4300..5943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCTAGCTCCTCTCTACCTTGTACCTCCGAGCGTCACCCCAACTGC
AGCCGTGGCATGGCCATGTGCTAACAACCATCGCCATGCCTATGCCCCAA
CCGTAAGAGCTACCATCACCGCCCACCGCCTGCGAACGACGTGCGCAGCA
GCAGCGGCGGCACAAGATCGACCCGACAACGGCGCGAACACCGAGCGACT
GCTCGCCCTCGGCCGGCAACAGACCCAGGCGGGCGATCTAGAGTCCGCCG
TCTACCAGTTCGAGCGGGCCGCTAGCCAGGCCCCGCGGTCGGCGGTGTGT
CAGATAGAGCTTGGCCGAGCTCTCGTCCGATTGGGCAGAGGCCAGGAAGG
GTTCAACTGCCTCGTGGCTGCCTTCGGGATCGATTCTCTGTGTCCGGGCG
TGAAGGACGGCTTCCGCGAGTACTACAGGGCTGAGATTGAGGCCGACCCG
AACAACATCGACCTCCATGAAGGCCTGGCGGCGCTCTGCGTCGACTCCGG
CAATCCCGAAGAGGCTGCCGCTCTCTACCGCCGCTGCCTCGTACTGCACG
CGACTGCAGCAGTAGAGCGAAGTGGAAGAATACCAAGCTTTTCCTCGTCG
GACCCTTCCGCAGCAGGTGATCTCTCGTCCGAGGAGACCACAGAAGCGGC
GGCCGCGGCTCGAAAGGACCGGTGGTCAGACCGGTGGTCAGTGGCGCTCT
TCAAGTGCAACGCTTCGCTCTGCCAGTGGGACGACTGGAACGGCGAAGCT
CTCGCCCTGAGGACTGCCGTTCGGCGGCGGGGGCGGCGGTGGCGAGGGCG
AACAAGAGGAGGAGGGTCTGGGGGGCGGTTGTCGTCGGTGGAGGACGATG
GCGATCTGGTACATAGACTGTTGCTCGGATACGAAGACTACGACTTCGAA
CGGTTGGTGCCTCGAGACAAGCAGCAAGTGCCTCGAGACAAGCAGCAAGA
ACAGGGCAACAATGTTCGTGACAGCGACAACGGTGGCGTTGATGGAGACG
CCGGCGCTGGCCCTTTGCGACCAGCCCTACACCCTTTCGACTCTCTGAGC
GCTCCTCTGTCCATCGGCGACTGCCTGGCAGTCGCGCAGCAGCAGACCAG
AGGGGTGCTGGCAGAGGCAAGGGGCGGTAACAGCGGGCCTCGAGGCAGAG
ACGAAGAAGAAAGAACGTTGGGAGAAGAGGGCGTGGAGGGGGTGCAGGGC
CAATCG
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