mRNA_Ecto-sp13_S_contig12911.2396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12911.2396.1
Unique NamemRNA_Ecto-sp13_S_contig12911.2396.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Match: D7FS57_ECTSI (Chloride channel protein EriC n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS57_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 2.940e-110
Identity = 203/231 (87.88%), Postives = 208/231 (90.04%), Query Frame = 1 
Query:  232 MSMARKRHAAVAFGRTLLLRRGSTFFQRGTTDTEHSSSSRRSPSVRVNSAVDDSASAFPAFPSERVGVAAXXXXXXXXXASTRPPLQTLATDAAQSRSPSGSVAAAAAPTLSLEWGSEKLQKLRQYVFELPEDTAEESRFLIMAALLGVITGTAVTVFKTLIGAVKKFSYDDLIGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWSPRR 924
            M+ ARKRHAA AFGRTLLL RGS FFQRGTTDTEHSSS  RSPSVRVN AVDDSASAFPAFPSER+ V A XXXXXXXX   RPP Q  AT+AAQS+SPSG VA  AA TLSLEWGSEKLQKLRQYVFELPEDTAEESRFLIMAALLGVITGTAVT+FKTLIGAVKKFSYDDLIGRVPPGAAST IGA IPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPW PRR
Sbjct:    1 MTSARKRHAAFAFGRTLLLGRGSPFFQRGTTDTEHSSSIGRSPSVRVNGAVDDSASAFPAFPSERISVEAAXXXXXXXX--XRPPWQAPATEAAQSQSPSGGVAXXAATTLSLEWGSEKLQKLRQYVFELPEDTAEESRFLIMAALLGVITGTAVTIFKTLIGAVKKFSYDDLIGRVPPGAASTCIGAFIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWRPRR 229
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BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Match: A0A836CI00_9STRA (Chloride channel (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI00_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.550e-14
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:  634 AEESRFLIMAALLGVITGTAVTVFKTLIGAVKKFSYDDLIGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWSPRR 924
            A E  FL+++AL+G  TG  VT+FK  IG VKK+ Y D +G  P    S  + A IP+LGAIGVV+       + +GPGLGGL EEVD     +P R
Sbjct:    2 AREFNFLLLSALIGASTGGCVTLFKLAIGLVKKYLYGDFVGNFPI-EYSQLVVALIPILGAIGVVAARACTPKQDFGPGLGGLIEEVDNGTAANPLR 97
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BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Match: A0A836C8J5_9STRA (Chloride channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.240e-7
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:  718 GAVKKFSYDDLIGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWSPRR 924
            G VK F Y D +GR P    S  + A IP+LG I VV++   L  + +GPGLGGL EEVD   P  P R
Sbjct:  197 GLVKNFLYGDFVGRFPM-MYSQLVVALIPILGGIAVVAIRSLLPKRDFGPGLGGLIEEVDNGTPVKPGR 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS57_ECTSI2.940e-11087.88Chloride channel protein EriC n=2 Tax=Ectocarpus T... [more]
A0A836CI00_9STRA4.550e-1447.42Chloride channel (Fragment) n=1 Tax=Tribonema minu... [more]
A0A836C8J5_9STRA7.240e-747.83Chloride channel n=1 Tax=Tribonema minus TaxID=303... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12911contigEcto-sp13_S_contig12911:2901..4659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score355.9
Seed ortholog evalue1.9e-95
Seed eggNOG ortholog2880.D7FS57
Model size927
KEGG rclassRC00311,RC00313
KEGG koko:K01637
KEGG ReactionR00479
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200
KEGG ModuleM00012
Hectar predicted targeting categorymitochondrion
Exons2
EggNOG free text desc.voltage-gated chloride channel activity
EggNOG OGsCOG0038@1,KOG0475@2759
Ec32 ortholog descriptionChloride channel protein EriC
Ec32 orthologEc-01_000640.1
EC4.1.3.1
Cds size927
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.9268775-CDS-Ecto-sp13_S_contig12911:2900..35941681462690.9268775-CDS-Ecto-sp13_S_contig12911:2900..3594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12911 2901..3594 +
1681462690.9394536-CDS-Ecto-sp13_S_contig12911:4426..46591681462690.9394536-CDS-Ecto-sp13_S_contig12911:4426..4659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12911 4427..4659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12911.2396.1prot_Ecto-sp13_S_contig12911.2396.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12911 2901..4659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12911.2396.1

>prot_Ecto-sp13_S_contig12911.2396.1 ID=prot_Ecto-sp13_S_contig12911.2396.1|Name=mRNA_Ecto-sp13_S_contig12911.2396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MWLKSARGRGMKTGAQRTTSASASATILLMQTYVVSISALATIATSRAHP
AGALCTPTTPAFGRCCLISRRPSSAVVMSMARKRHAAVAFGRTLLLRRGS
TFFQRGTTDTEHSSSSRRSPSVRVNSAVDDSASAFPAFPSERVGVAAAAA
AAAAAGASTRPPLQTLATDAAQSRSPSGSVAAAAAPTLSLEWGSEKLQKL
RQYVFELPEDTAEESRFLIMAALLGVITGTAVTVFKTLIGAVKKFSYDDL
IGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDR
QVPWSPRR*
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mRNA from alignment at Ecto-sp13_S_contig12911:2901..4659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12911.2396.1 ID=mRNA_Ecto-sp13_S_contig12911.2396.1|Name=mRNA_Ecto-sp13_S_contig12911.2396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12911:2901..4659+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTGAAATCAGCTAGAGGGAGAGGAATGAAGACCGGCGCCCAAAG
AACGACGAGTGCATCAGCATCAGCAACCATCCTGCTGATGCAAACGTACG
TCGTATCCATATCGGCTCTCGCCACCATCGCCACTAGCAGAGCACATCCA
GCGGGCGCTTTGTGCACCCCAACCACACCCGCCTTTGGCCGGTGTTGCTT
GATTTCTCGGCGACCGTCCTCCGCAGTGGTCATGTCTATGGCAAGAAAAC
GGCACGCGGCCGTCGCGTTCGGTCGTACATTGCTGCTGCGGCGAGGCTCC
ACGTTCTTCCAGCGAGGTACAACAGACACGGAGCACAGCAGTAGCAGTAG
AAGAAGCCCGTCGGTGCGAGTAAACAGCGCGGTGGATGACTCCGCGTCAG
CGTTCCCGGCCTTCCCATCCGAGCGAGTCGGTGTGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCCGGGGCGTCTACCAGACCCCCCTTGCAAACCCTAGC
AACAGATGCGGCGCAATCTCGATCTCCAAGCGGGAGTGTTGCCGCCGCCG
CTGCCCCGACGTTGTCGCTGGAGTGGGGCTCAGAGAAGCTGCAGAAGCTC
CGACAGTACGTGTTCGAGCTCCCCGAGGACACGGCCGAGGAGTCGAGGTT
TCTGATCATGGCTGCCCTCCTCGGCGTTATCACCGGTACCGCAGGTATGC
AAAACATGTCGTCTCCCTTGCGTGGAAACGCTCATCTTCCGTGTTTCGTC
ATGATCTTTACACAGGTAGCACAAGGGTTGTTGACAGATGATCATGCCAC
GTATCACCACGACCTCGATGTGCCAAAGCCGAGCCAGCGGGCTCGGAGTA
CCCAGCACTAGCCTCGACGTTTATCACGAAACGCCCGAGTTCGAAGAGCG
ATGAAGGCGCTGGTACAAAGCAAGCTTTTCGCCTTGACTTCATGTGCATA
CATGCCGCATCCGGGCACCACGTTGTTCGGGGTTGCTGTTCATGTAGCCT
ACTTGGTGCGTAGTCCATCCGGCCAGCAGCAGAAGCACCAGCAGAAGCAC
CAGCAACACCGTCAGCAGCAATGCAGTGGGCATGCATCTGTATGCTATGC
TGATTCGGTTGCCTACCAACGAAAACAGCAGCAAAGCTCATGTCGGTCTT
CGGGGCCTTGATTTCTGAATTTGACGAAGGCTTGGGTGTACTCCTGCCTG
TAACAAGACACACGTGGATAACGATCTAGAATGGAGGGCAGACCCCATGT
GCCCGGACAGTACTGCTGTCGGGAACATGTGAGCCAGCCAGATAACTCCT
CCGCGCAGATTGCACGGCTCGGTTCCTACGCGTATGACAGCTGCCACGAT
TGTGCCAACCCCTCCGTACCTCACGTGGCACCCCCAGAGCTTTGCATTCC
AGCAATGTACAAATACACCTCTTGTTCCCAAAAGGCCGTCAGCGCCCCTC
CCCCCCCCCCGCCCAAAAACCTGGCCTCACCACCCACACTACCTACATAT
GGCGTCACCCCCCCTTGGAAAAAAAGTAACCGTCTTCAAGACCCTCATCG
GAGCCGTGAAGAAATTCTCGTACGACGATCTGATTGGCCGAGTTCCCCCG
GGCGCCGCCTCCACGTACATCGGAGCCGCCATCCCCGTGCTTGGTGCCAT
TGGGGTGGTGTCCTTGATGTGGGCGCTGCAGCTCAAGTCCTACGGGCCGG
GGTTAGGCGGACTAACGGAGGAGGTGGATAGGCAGGTCCCCTGGAGTCCT
CGAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12911:2901..4659+

>mRNA_Ecto-sp13_S_contig12911.2396.1 ID=mRNA_Ecto-sp13_S_contig12911.2396.1|Name=mRNA_Ecto-sp13_S_contig12911.2396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12911:2901..4659+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTGAAATCAGCTAGAGGGAGAGGAATGAAGACCGGCGCCCAAAG
AACGACGAGTGCATCAGCATCAGCAACCATCCTGCTGATGCAAACGTACG
TCGTATCCATATCGGCTCTCGCCACCATCGCCACTAGCAGAGCACATCCA
GCGGGCGCTTTGTGCACCCCAACCACACCCGCCTTTGGCCGGTGTTGCTT
GATTTCTCGGCGACCGTCCTCCGCAGTGGTCATGTCTATGGCAAGAAAAC
GGCACGCGGCCGTCGCGTTCGGTCGTACATTGCTGCTGCGGCGAGGCTCC
ACGTTCTTCCAGCGAGGTACAACAGACACGGAGCACAGCAGTAGCAGTAG
AAGAAGCCCGTCGGTGCGAGTAAACAGCGCGGTGGATGACTCCGCGTCAG
CGTTCCCGGCCTTCCCATCCGAGCGAGTCGGTGTGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCCGGGGCGTCTACCAGACCCCCCTTGCAAACCCTAGC
AACAGATGCGGCGCAATCTCGATCTCCAAGCGGGAGTGTTGCCGCCGCCG
CTGCCCCGACGTTGTCGCTGGAGTGGGGCTCAGAGAAGCTGCAGAAGCTC
CGACAGTACGTGTTCGAGCTCCCCGAGGACACGGCCGAGGAGTCGAGGTT
TCTGATCATGGCTGCCCTCCTCGGCGTTATCACCGGTACCGCAGTAACCG
TCTTCAAGACCCTCATCGGAGCCGTGAAGAAATTCTCGTACGACGATCTG
ATTGGCCGAGTTCCCCCGGGCGCCGCCTCCACGTACATCGGAGCCGCCAT
CCCCGTGCTTGGTGCCATTGGGGTGGTGTCCTTGATGTGGGCGCTGCAGC
TCAAGTCCTACGGGCCGGGGTTAGGCGGACTAACGGAGGAGGTGGATAGG
CAGGTCCCCTGGAGTCCTCGAAGGTGA
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