mRNA_Ecto-sp13_S_contig1291.2395.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1291.2395.1
Unique NamemRNA_Ecto-sp13_S_contig1291.2395.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1291.2395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1291contigEcto-sp13_S_contig1291:11278..11703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size426
Hectar predicted targeting categorymitochondrion
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.8780756-UTR-Ecto-sp13_S_contig1291:11277..113731681462690.8780756-UTR-Ecto-sp13_S_contig1291:11277..11373Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1291 11278..11373 +
1681462690.8984566-UTR-Ecto-sp13_S_contig1291:11700..117031681462690.8984566-UTR-Ecto-sp13_S_contig1291:11700..11703Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1291 11701..11703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.8887658-CDS-Ecto-sp13_S_contig1291:11373..117001681462690.8887658-CDS-Ecto-sp13_S_contig1291:11373..11700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1291 11374..11700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1291.2395.1prot_Ecto-sp13_S_contig1291.2395.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1291 11374..11700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1291.2395.1

>prot_Ecto-sp13_S_contig1291.2395.1 ID=prot_Ecto-sp13_S_contig1291.2395.1|Name=mRNA_Ecto-sp13_S_contig1291.2395.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MLATRYIQAHKMSFASSRIIHASIFSLVTFFYFPGLSREHHESLSQNGLH
YTLHINPVFALEATFVVELAFVLVYLPNLRLRGSRRSKVSSHNFDPRLCP
CSAVHVGT*
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mRNA from alignment at Ecto-sp13_S_contig1291:11278..11703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1291.2395.1 ID=mRNA_Ecto-sp13_S_contig1291.2395.1|Name=mRNA_Ecto-sp13_S_contig1291.2395.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1291:11278..11703+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCTTGCAAATTCCAACATGTGCTTTCCCACAGCAGCTGCCGTGGCA
ATCTCACGGGGACGTTAACGCTGGTCATCTGCATCACTTCTCACCAATGT
TGGCCACCCGTTATATCCAAGCACATAAAATGTCGTTCGCCTCGTCCCGG
ATAATCCATGCCTCAATCTTCTCTCTTGTGACTTTCTTCTATTTCCCTGG
GCTCAGTCGTGAACATCATGAGTCTTTGTCGCAAAACGGACTACACTATA
CACTGCACATCAACCCGGTCTTCGCGCTTGAAGCGACATTCGTAGTTGAA
CTAGCATTCGTCTTAGTCTACCTTCCTAATCTTCGTCTACGAGGTTCTCG
AAGGTCCAAAGTCTCCAGCCATAACTTCGACCCTCGACTTTGTCCCTGCT
CCGCTGTCCATGTTGGTACCTAGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1291:11278..11703+

>mRNA_Ecto-sp13_S_contig1291.2395.1 ID=mRNA_Ecto-sp13_S_contig1291.2395.1|Name=mRNA_Ecto-sp13_S_contig1291.2395.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1291:11278..11703+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGCCACCCGTTATATCCAAGCACATAAAATGTCGTTCGCCTCGTC
CCGGATAATCCATGCCTCAATCTTCTCTCTTGTGACTTTCTTCTATTTCC
CTGGGCTCAGTCGTGAACATCATGAGTCTTTGTCGCAAAACGGACTACAC
TATACACTGCACATCAACCCGGTCTTCGCGCTTGAAGCGACATTCGTAGT
TGAACTAGCATTCGTCTTAGTCTACCTTCCTAATCTTCGTCTACGAGGTT
CTCGAAGGTCCAAAGTCTCCAGCCATAACTTCGACCCTCGACTTTGTCCC
TGCTCCGCTGTCCATGTTGGTACCTAG
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