mRNA_Ecto-sp13_S_contig12893.2379.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12893.2379.1
Unique NamemRNA_Ecto-sp13_S_contig12893.2379.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12893.2379.1 vs. uniprot
Match: D7G4G1_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.190e-19
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 MPERLSQEEAYELLGLEPEPEKTPEEIKKAYKRKSLATHPDKNP 132
            MPERLSQEEAYELLGLEPEPEKTPEEIKKAYKRKSLATHPDKNP
Sbjct:    1 MPERLSQEEAYELLGLEPEPEKTPEEIKKAYKRKSLATHPDKNP 44
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12893.2379.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.650e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 MPERLSQEEAYELLGLEPEPEKTPEEIKKAYKRKSLATHPDKNP 132
            MPERLSQEEAYELLGLE EPE++PEEIKKAYKRKSLATHPDKNP
Sbjct:    1 MPERLSQEEAYELLGLEAEPERSPEEIKKAYKRKSLATHPDKNP 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12893.2379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4G1_ECTSI6.190e-19100.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A6H5KUW2_9PHAE6.650e-1793.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12893contigEcto-sp13_S_contig12893:1815..1976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score86.7
Seed ortholog evalue3.7e-15
Seed eggNOG ortholog2880.D7G4G1
Model size162
KEGG koko:K09537
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
Cds size162
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.6490233-CDS-Ecto-sp13_S_contig12893:1814..19761681462689.6490233-CDS-Ecto-sp13_S_contig12893:1814..1976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12893 1815..1976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12893.2379.1prot_Ecto-sp13_S_contig12893.2379.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12893 1815..1976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12893.2379.1

>prot_Ecto-sp13_S_contig12893.2379.1 ID=prot_Ecto-sp13_S_contig12893.2379.1|Name=mRNA_Ecto-sp13_S_contig12893.2379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MPERLSQEEAYELLGLEPEPEKTPEEIKKAYKRKSLATHPDKNPVGRACA
CSS*
back to top

mRNA from alignment at Ecto-sp13_S_contig12893:1815..1976-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12893.2379.1 ID=mRNA_Ecto-sp13_S_contig12893.2379.1|Name=mRNA_Ecto-sp13_S_contig12893.2379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12893:1815..1976- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGAAAGGTTGTCTCAAGAGGAGGCCTACGAGCTGCTTGGTCTGGA
GCCAGAGCCGGAAAAGACGCCCGAGGAGATCAAGAAGGCCTACAAGAGGA
AGTCCCTGGCTACCCACCCTGACAAGAACCCGGTAGGCCGTGCGTGCGCC
TGCAGCAGTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12893:1815..1976-

>mRNA_Ecto-sp13_S_contig12893.2379.1 ID=mRNA_Ecto-sp13_S_contig12893.2379.1|Name=mRNA_Ecto-sp13_S_contig12893.2379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12893:1815..1976- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGAAAGGTTGTCTCAAGAGGAGGCCTACGAGCTGCTTGGTCTGGA
GCCAGAGCCGGAAAAGACGCCCGAGGAGATCAAGAAGGCCTACAAGAGGA
AGTCCCTGGCTACCCACCCTGACAAGAACCCGGTAGGCCGTGCGTGCGCC
TGCAGCAGTTAA
back to top