mRNA_Ecto-sp13_S_contig10211.236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10211.236.1
Unique NamemRNA_Ecto-sp13_S_contig10211.236.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: D7G6U5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U5_ECTSI)

HSP 1 Score: 516 bits (1329), Expect = 1.240e-178
Identity = 274/311 (88.10%), Postives = 286/311 (91.96%), Query Frame = 1
Query:   10 FVRRSRLHLTFAGRYDEMRVVLQRMTNAPVHLPSGLVPHSSTRRPGPSFASAWQSWRRSLGGRWYQSASGSAPDQITETSAIINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDDTTPDRAV 942
            FV  S   L   GRYDEMR+V+QRMTNAPVHLPSGLV HSSTRRPGPSFASAWQSWRRSLGG  YQSASG APDQITETS++INNP+DE+ RGSESS T+D+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIFLVE+VGRKPLLSASMVLAA AASVFALGSGSGAGVVISGACLFNAFS CGW+AL VVSTEAFPTA RVSGMGLVSAAG LGSIGAQFANGSLEGNVFLLL VTSG+TLVGGLASLLLP ETLGVSLD TTPDRAV
Sbjct:  302 FVPESPRFLAREGRYDEMRIVMQRMTNAPVHLPSGLVQHSSTRRPGPSFASAWQSWRRSLGGGLYQSASGIAPDQITETSSMINNPEDELTRGSESSGTKDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFLVEQVGRKPLLSASMVLAAVAASVFALGSGSGAGVVISGACLFNAFSTCGWNALGVVSTEAFPTAARVSGMGLVSAAGRLGSIGAQFANGSLEGNVFLLLAVTSGLTLVGGLASLLLPGETLGVSLDGTTPDRAV 612          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A6H5K971_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K971_9PHAE)

HSP 1 Score: 422 bits (1085), Expect = 7.830e-147
Identity = 231/276 (83.70%), Postives = 239/276 (86.59%), Query Frame = 1
Query:   61 MRVVLQRMTNAPVHLPSGLVPHSSTRRPGPSFASAWQSWRRSLGGRWYQSASGSAPDQITETSAIINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLL 888
            MR VLQRMTNAPVHLPSG V H STRRPG SFA                     APDQITETSA+INNP+DEIGRGSESSSTQD+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYG+YGVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIF VERVGRKPLLS SMVLAA A SVFALGSGSGAGVV+SGACLFNAFS CGW+AL VVSTEAFPTA RVSGMGLVSAAG LGSIGAQFANGSLEGNVFLLLVVTSG+TLVGGLASLLL
Sbjct:    1 MRAVLQRMTNAPVHLPSGFVQHRSTRRPGLSFARI-------------------APDQITETSAMINNPEDEIGRGSESSSTQDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGSYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFWVERVGRKPLLSVSMVLAAVAPSVFALGSGSGAGVVVSGACLFNAFSTCGWNALGVVSTEAFPTAARVSGMGLVSAAGRLGSIGAQFANGSLEGNVFLLLVVTSGLTLVGGLASLLL 257          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: D7G6U3_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U3_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 3.860e-135
Identity = 208/231 (90.04%), Postives = 218/231 (94.37%), Query Frame = 1
Query:  253 IINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDDTTPDRAVP 945
            +INNP+DEIGRGSESSSTQD+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYGT+GVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIFLVE+VGRKPLLSASMVLAA AASVFALGSGSGA VV+SG CLFNAF  CGW+AL+VVSTEAFPTA RVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLL VTSG+TLVGGLAS LLP ETLGVSLD TTPDRAVP
Sbjct:    1 MINNPEDEIGRGSESSSTQDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGTFGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFLVEQVGRKPLLSASMVLAAVAASVFALGSGSGAAVVVSG-CLFNAFITCGWNALDVVSTEAFPTAARVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLAVTSGLTLVGGLASFLLPGETLGVSLDGTTPDRAVP 230          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A6H5K925_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K925_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 3.540e-89
Identity = 140/164 (85.37%), Postives = 146/164 (89.02%), Query Frame = 1
Query:   61 MRVVLQRMTNAPVHLPSGLVPHSSTRRPGPSFASAWQSWRRSLGGRWYQSASGSAPDQITETSAIINNPKDEIGRGSESSSTQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERV 552
            MR VLQRMTNAPVHLPSG V H ST RPG SFAS  QSWR SLGG  YQSA G APDQITE SA+INNP+DEIGRGSESSST+D+RDGGVMRILCPGND RLQRA IVLVVVWFTLSYG+YGVATWNNQVFADIGLSNPYLCS +YSLSDLPGNVASIF VERV
Sbjct:    1 MRAVLQRMTNAPVHLPSGFVQHRSTTRPGLSFASVPQSWRCSLGGGLYQSAPGIAPDQITEISAMINNPEDEIGRGSESSSTKDQRDGGVMRILCPGNDARLQRATIVLVVVWFTLSYGSYGVATWNNQVFADIGLSNPYLCSVIYSLSDLPGNVASIFWVERV 164          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A835YPW8_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW8_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.250e-53
Identity = 103/188 (54.79%), Postives = 131/188 (69.68%), Query Frame = 1
Query:  358 PRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDD 921
            P   R   VL+  WF LSYG+YG++TWN  +FADIGL NP+  SF+Y+L +LPGNV SI  VERVGR+ +L  SM  AA AA++FALG+  GA +V+  A  FNA S  GW+ L+ +S E+FPT  R SGMGLV+A G  GS+ AQ  NG LE +V LLL+VTSG+ L G  A+ LLPRET G +L +
Sbjct:  374 PPTARTTYVLMATWFALSYGSYGISTWNATLFADIGLGNPFASSFVYALGNLPGNVVSILYVERVGRRRMLCVSMAGAAAAAALFALGTRGGAALVVGAATTFNALSVAGWNCLDCLSAESFPTGVRASGMGLVAACGRAGSVAAQLVNGRLERDVPLLLLVTSGLMLAGAGAAALLPRETAGRALQE 561          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A7S3HJH3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJH3_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.400e-51
Identity = 95/186 (51.08%), Postives = 138/186 (74.19%), Query Frame = 1
Query:  364 LQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLDD 921
            L R +++L+V+WFTLS+G+YG++TW + +FAD+G+ NPY  +F+++L++LPGN+ S+  +E+ GR+ LLSA M LA  +A  FAL +   A VV+  A LFNAFS  GW++L+ +S E FPT  R S MG+++A G LG++ AQF NGSLE N+ LLL VTS  T+VGGLA+ LLP++T G ++ D
Sbjct:  266 LLRTSLILLVIWFTLSFGSYGLSTWISTLFADVGIGNPYAAAFIFALANLPGNIVSLLYIEKYGRRVLLSAGMCLAGASALGFALNTAD-AFVVVLCAALFNAFSVIGWNSLDCLSVECFPTHVRTSAMGVLAAGGRLGAMSAQFVNGSLEQNIPLLLFVTSACTVVGGLAAWLLPKDTAGRAMSD 450          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A4D9D2N9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2N9_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.940e-46
Identity = 93/185 (50.27%), Postives = 128/185 (69.19%), Query Frame = 1
Query:  364 LQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLGVSLD 918
            L+   + L+VVWFTL +GTYG++TW + +F  IG+ N +L +FL++L++LPGN+AS  L+ER+GRK LL+ SM+LAAG+A VFA  S     + +  AC F AFS  GW+AL+ +STE+FPTA R +GMGL+S  G   S+ A F +GSLE +V LL  VT   T++G L +  LP E  G SLD
Sbjct:  313 LRLTTLRLMVVWFTLCFGTYGLSTWISTIFKVIGIKNEFLPTFLFALANLPGNIASFVLIERLGRKRLLAFSMLLAAGSAFVFAFTSTRATWLAVVAACCFQAFSVAGWNALDALSTESFPTAMRTTGMGLLSGTGRFSSLIAMFVDGSLEHSVALLFTVTGTTTVLGALTAFWLPYEPTGQSLD 497          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A482T2B5_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2B5_9ARCH)

HSP 1 Score: 159 bits (402), Expect = 2.940e-41
Identity = 85/181 (46.96%), Postives = 126/181 (69.61%), Query Frame = 1
Query:  364 LQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRETLG 906
            L+  +IV + VWFTLS+G+YG++TW + +F D+G+ NP+  +F+++L++LPGNV S++L++  GR+ LLS  M LA  ++  FAL +   A VV+  A LFNAFS  GW++L+ +S E FPT  R + MGL++A+G LG+I  QF NGSLE N+ LLL VT+   L GG  +  LP ++ G
Sbjct:  280 LKFTSIVFMGVWFTLSFGSYGISTWISVLFEDVGIGNPFAAAFIFALANLPGNVISLWLIDTYGRRLLLSWGMALAGLSSLGFALDT-KDAAVVVLFAALFNAFSTMGWNSLDCLSAEMFPTRARSTAMGLLAASGRLGAISGQFVNGSLENNIPLLLFVTTACCLFGGCIAFALPHDSAG 459          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: W2QKP3_PHYPN (MFS domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2QKP3_PHYPN)

HSP 1 Score: 153 bits (387), Expect = 3.890e-39
Identity = 97/242 (40.08%), Postives = 150/242 (61.98%), Query Frame = 1
Query:  205 QSASGSAPDQITETSAII---NNPKDEIGR-----GSESSSTQDERDG-GVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALG--SGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEG---NVFLLLVVTSGVTLVGGLASLLL 888
            ++ +G A D +TE+S+++   N    E+       G      Q ER       IL    DP L+   I L++ WF LS+G+YG+ATW   +F  IGL NP+  +F+Y+ ++LPGN+ +  L++R+G + +L+ SM+L+AG A+ FA    S SGA  ++  A  FNAFS  GW+A++++S E+FPT  R +GMG +SAAG  GS+ AQF NG L G   +V LLL +T+ + L+G ++S+L+
Sbjct:  237 KTTNGDAADHVTESSSLLSQHNTDASEVNGYTVVFGPSDPGIQTERSSLSAYGILF---DPVLRGTTISLLMSWFCLSFGSYGLATWITMLFKRIGLENPFANAFIYAAANLPGNIMTALLMDRLGGRRILAISMLLSAGCATGFAYANSSASGAATIVLLASGFNAFSTAGWNAIDLMSAESFPTDVRTTGMGTLSAAGRAGSVAAQFVNGYLIGPPVHVTLLLAITASMMLLGTISSVLV 475          
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Match: A0A225WUC3_9STRA (Synaptic vesicle glycoprotein 2A n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUC3_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.310e-38
Identity = 81/183 (44.26%), Postives = 129/183 (70.49%), Query Frame = 1
Query:  355 DPRLQRAAIVLVVVWFTLSYGTYGVATWNNQVFADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGAASVFALGSGSGAGV--VISGACLFNAFSACGWSALEVVSTEAFPTATRVSGMGLVSAAGTLGSIGAQFANGSLEG---NVFLLLVVTSGVTLVGGLASLLL 888
            DP L+   I L++ WF LS+G+YG+ATW   +F  IGL NP+  +F+Y+ ++LPGN+ +  L++R+G + +L+ SM+L+AG A+ FA  + S +GV  ++  A  +NAFS  GW+A++++S E+FPT  R +GMG++SA G  GS+ AQF NG L G   +V LLLV+T+ + L+G ++S+L+
Sbjct:  279 DPVLRATTISLLMSWFCLSFGSYGLATWITMLFMRIGLENPFANAFIYAAANLPGNIMTALLLDRLGGRRILAISMLLSAGCATGFAYANSSASGVASIVLLASGYNAFSTAGWNAIDLMSAESFPTDIRTTGMGMLSAVGRAGSVAAQFVNGYLIGPPVHVTLLLVITASMMLIGSISSVLV 461          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10211.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6U5_ECTSI1.240e-17888.10MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K971_9PHAE7.830e-14783.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6U3_ECTSI3.860e-13590.04MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K925_9PHAE3.540e-8985.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPW8_9STRA1.250e-5354.79Major facilitator superfamily domain-containing pr... [more]
A0A7S3HJH3_9STRA2.400e-5151.08Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9D2N9_9STRA2.940e-4650.27MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A482T2B5_9ARCH2.940e-4146.96MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
W2QKP3_PHYPN3.890e-3940.08MFS domain-containing protein n=17 Tax=Phytophthor... [more]
A0A225WUC3_9STRA2.310e-3844.26Synaptic vesicle glycoprotein 2A n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10211contigEcto-sp13_S_contig10211:2586..3871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score523.9
Seed ortholog evalue5.3e-146
Seed eggNOG ortholog2880.D7G6U5
Preferred nameSV2A
Model size948
KEGG koko:K06258
KEGG TC2.A.1.22
KEGG Pathwayko04512,map04512
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006873,GO:0006874,GO:0006875,GO:0007154,GO:0007267,GO:0007268,GO:0008021,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0014052,GO:0016020,GO:0016021,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030003,GO:0030054,GO:0030133,GO:0030285,GO:0030424,GO:0030425,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031410,GO:0031594,GO:0031982,GO:0032879,GO:0032890,GO:0033267,GO:0036477,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043679,GO:0044070,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0048786,GO:0048878,GO:0050789,GO:0050801,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051588,GO:0051952,GO:0051955,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070382,GO:0071944,GO:0072503,GO:0072507,GO:0097447,GO:0097458,GO:0097708,GO:0098563,GO:0098588,GO:0098771,GO:0098793,GO:0098805,GO:0098916,GO:0099501,GO:0099503,GO:0099536,GO:0099537,GO:0120025,GO:0120038,GO:0150034
Exons2
EggNOG free text desc.solute carrier family 22
EggNOG OGsKOG0255@1,KOG0255@2759
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-01_012250.1
Cds size948
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.9161894-CDS-Ecto-sp13_S_contig10211:2585..31341681462515.9161894-CDS-Ecto-sp13_S_contig10211:2585..3134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10211 2586..3134 +
1681462515.9290535-CDS-Ecto-sp13_S_contig10211:3472..38711681462515.9290535-CDS-Ecto-sp13_S_contig10211:3472..3871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10211 3473..3871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10211.236.1prot_Ecto-sp13_S_contig10211.236.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10211 2586..3871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10211.236.1

>prot_Ecto-sp13_S_contig10211.236.1 ID=prot_Ecto-sp13_S_contig10211.236.1|Name=mRNA_Ecto-sp13_S_contig10211.236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
ERTFVRRSRLHLTFAGRYDEMRVVLQRMTNAPVHLPSGLVPHSSTRRPGP
SFASAWQSWRRSLGGRWYQSASGSAPDQITETSAIINNPKDEIGRGSESS
STQDERDGGVMRILCPGNDPRLQRAAIVLVVVWFTLSYGTYGVATWNNQV
FADIGLSNPYLCSFLYSLSDLPGNVASIFLVERVGRKPLLSASMVLAAGA
ASVFALGSGSGAGVVISGACLFNAFSACGWSALEVVSTEAFPTATRVSGM
GLVSAAGTLGSIGAQFANGSLEGNVFLLLVVTSGVTLVGGLASLLLPRET
LGVSLDDTTPDRAVP*
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mRNA from alignment at Ecto-sp13_S_contig10211:2586..3871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10211.236.1 ID=mRNA_Ecto-sp13_S_contig10211.236.1|Name=mRNA_Ecto-sp13_S_contig10211.236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1286bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:2586..3871+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGAACTTTCGTGCGGCGATCACGACTCCACCTAACTTTCGCAGGCCG ATACGACGAAATGAGGGTCGTTTTGCAACGGATGACGAATGCTCCCGTCC ATCTACCTTCGGGATTGGTTCCACATAGTTCTACTCGAAGACCCGGCCCC AGCTTCGCAAGTGCATGGCAATCCTGGCGGCGCAGCTTGGGCGGGAGGTG GTATCAAAGCGCATCAGGGAGTGCGCCAGATCAGATTACAGAGACCTCCG CCATAATCAACAATCCAAAAGATGAGATTGGTCGAGGCAGCGAAAGCAGC AGTACCCAGGACGAGCGTGACGGGGGTGTGATGCGAATCCTTTGTCCGGG GAACGATCCGAGACTCCAAAGGGCGGCGATCGTGCTGGTCGTCGTGTGGT TCACGTTGAGCTACGGCACGTATGGGGTGGCCACGTGGAACAACCAGGTC TTTGCCGATATTGGGCTGTCCAACCCGTACCTCTGTTCTTTCCTCTACTC CCTCTCCGACCTCCCGGGAAATGTAGCGTCCATTTTTTTGGTTGAACGGG TGAGTGGAGAGGAACGTGCAACAAGGCATGTTCTGCTGTGGTATTGTGTC CTTTGTTTGCACGTGCCCCCGACTTCCTTGGCAGCAATCATCAAACAGCT CTTTTGCCGCCGGTCGTTTCGGCTTCTCAGCTGTTTAGTCGTCGTTCGGG GGCTGTTAGTGCGAGCTCCAGGAAGTTTGGTGCTCATGACATCATGAAAA CTGTGCATTTTCACCTCGAAAGTTGCATCAAGTTGTATTTGTTGAACGAG GAGTAAACAGGAAGCTTGATAATGTCTTTCCAATTGCAAGACCCCGCCCC CTGTCCCATACCCCGACATCGAAAACGCCTCGTTCAGGTTGGCCGAAAAC CGCTTTTGTCTGCATCAATGGTGCTTGCTGCGGGTGCGGCATCAGTTTTC GCTCTCGGATCTGGATCTGGAGCAGGGGTGGTAATTTCTGGGGCTTGCCT ATTCAACGCGTTTAGCGCGTGCGGATGGAGTGCCCTAGAAGTTGTTTCGA CAGAAGCGTTTCCGACTGCCACGAGGGTGTCGGGGATGGGGCTGGTGTCG GCGGCGGGGACACTGGGTTCGATTGGGGCACAGTTCGCGAACGGTTCCTT AGAGGGTAACGTCTTCCTTCTGCTGGTCGTGACGAGCGGAGTGACATTGG TGGGAGGATTGGCATCGTTGCTGCTCCCTCGCGAAACGTTAGGGGTGTCT CTCGATGATACGACGCCAGATCGTGCCGTCCCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10211:2586..3871+

>mRNA_Ecto-sp13_S_contig10211.236.1 ID=mRNA_Ecto-sp13_S_contig10211.236.1|Name=mRNA_Ecto-sp13_S_contig10211.236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:2586..3871+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGAACTTTCGTGCGGCGATCACGACTCCACCTAACTTTCGCAGGCCG
ATACGACGAAATGAGGGTCGTTTTGCAACGGATGACGAATGCTCCCGTCC
ATCTACCTTCGGGATTGGTTCCACATAGTTCTACTCGAAGACCCGGCCCC
AGCTTCGCAAGTGCATGGCAATCCTGGCGGCGCAGCTTGGGCGGGAGGTG
GTATCAAAGCGCATCAGGGAGTGCGCCAGATCAGATTACAGAGACCTCCG
CCATAATCAACAATCCAAAAGATGAGATTGGTCGAGGCAGCGAAAGCAGC
AGTACCCAGGACGAGCGTGACGGGGGTGTGATGCGAATCCTTTGTCCGGG
GAACGATCCGAGACTCCAAAGGGCGGCGATCGTGCTGGTCGTCGTGTGGT
TCACGTTGAGCTACGGCACGTATGGGGTGGCCACGTGGAACAACCAGGTC
TTTGCCGATATTGGGCTGTCCAACCCGTACCTCTGTTCTTTCCTCTACTC
CCTCTCCGACCTCCCGGGAAATGTAGCGTCCATTTTTTTGGTTGAACGGG
TTGGCCGAAAACCGCTTTTGTCTGCATCAATGGTGCTTGCTGCGGGTGCG
GCATCAGTTTTCGCTCTCGGATCTGGATCTGGAGCAGGGGTGGTAATTTC
TGGGGCTTGCCTATTCAACGCGTTTAGCGCGTGCGGATGGAGTGCCCTAG
AAGTTGTTTCGACAGAAGCGTTTCCGACTGCCACGAGGGTGTCGGGGATG
GGGCTGGTGTCGGCGGCGGGGACACTGGGTTCGATTGGGGCACAGTTCGC
GAACGGTTCCTTAGAGGGTAACGTCTTCCTTCTGCTGGTCGTGACGAGCG
GAGTGACATTGGTGGGAGGATTGGCATCGTTGCTGCTCCCTCGCGAAACG
TTAGGGGTGTCTCTCGATGATACGACGCCAGATCGTGCCGTCCCATGA
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